libbpp-phyl →
2.3.1-9 →
armhf → 2017-07-24 13:56:21
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-03
+==============================================================================+
| libbpp-phyl 2.3.1-9 (armhf) Mon, 24 Jul 2017 11:24:32 +0000 |
+==============================================================================+
Package: libbpp-phyl
Version: 2.3.1-9
Source Version: 2.3.1-9
Distribution: buster-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/buster-staging-armhf-sbuild-0d62756b-fd00-4c0e-b299-71013c8dd9b8' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private buster-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private buster-staging/main Sources [10.0 MB]
Get:3 http://172.17.0.1/private buster-staging/main armhf Packages [11.9 MB]
Fetched 22.0 MB in 26s (843 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'libbpp-phyl' packaging is maintained in the 'Git' version control system at:
https://anonscm.debian.org/git/debian-med/libbpp-phyl.git
Please use:
git clone https://anonscm.debian.org/git/debian-med/libbpp-phyl.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 597 kB of source archives.
Get:1 http://172.17.0.1/private buster-staging/main libbpp-phyl 2.3.1-9 (dsc) [2166 B]
Get:2 http://172.17.0.1/private buster-staging/main libbpp-phyl 2.3.1-9 (tar) [587 kB]
Get:3 http://172.17.0.1/private buster-staging/main libbpp-phyl 2.3.1-9 (diff) [8100 B]
Fetched 597 kB in 0s (6746 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/libbpp-phyl-J4KKuC/libbpp-phyl-2.3.1' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/libbpp-phyl-J4KKuC' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-6rHNDm/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-6rHNDm/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-6rHNDm/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-6rHNDm/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-6rHNDm/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-6rHNDm/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-6rHNDm/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-6rHNDm/apt_archive ./ Packages [434 B]
Fetched 2110 B in 0s (2994 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 49 not upgraded.
Need to get 772 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-6rHNDm/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [772 B]
debconf: delaying package configuration, since apt-utils is not installed
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(Reading database ... 12681 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 10), cmake, d-shlibs (>= 0.80), libbpp-seq-dev (>= 2.3.1)
Filtered Build-Depends: debhelper (>= 10), cmake, d-shlibs (>= 0.80), libbpp-seq-dev (>= 2.3.1)
dpkg-deb: building package 'sbuild-build-depends-libbpp-phyl-dummy' in '/<<BUILDDIR>>/resolver-6rHNDm/apt_archive/sbuild-build-depends-libbpp-phyl-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-libbpp-phyl-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-6rHNDm/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-6rHNDm/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-6rHNDm/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-6rHNDm/apt_archive ./ Sources [520 B]
Get:5 copy:/<<BUILDDIR>>/resolver-6rHNDm/apt_archive ./ Packages [603 B]
Fetched 2456 B in 0s (3564 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install libbpp-phyl build dependencies (apt-based resolver)
-----------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data
d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism file gettext
gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13
libbpp-core-dev libbpp-core3 libbpp-seq-dev libbpp-seq11 libbsd0 libcroco3
libcurl3 libexpat1 libffi6 libfile-stripnondeterminism-perl libglib2.0-0
libgnutls30 libgssapi-krb5-2 libhogweed4 libicu57 libidn2-0 libjsoncpp1
libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.4-2
libldap-common liblzo2-2 libmagic-mgc libmagic1 libnettle6 libnghttp2-14
libp11-kit0 libpipeline1 libpsl5 librtmp1 libsasl2-2 libsasl2-modules-db
libsigsegv2 libssh2-1 libssl1.0.2 libtasn1-6 libtimedate-perl libtool
libunistring2 libuv1 libxml2 m4 man-db po-debconf
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation codeblocks eclipse ninja-build dh-make gettext-doc libasprintf-dev
libgettextpo-dev groff lrzip gnutls-bin krb5-doc krb5-user libtool-doc
gfortran | fortran95-compiler gcj-jdk m4-doc less www-browser
libmail-box-perl
Recommended packages:
curl | wget | lynx-cur ca-certificates libarchive-cpio-perl libglib2.0-data
shared-mime-info xdg-user-dirs krb5-locales publicsuffix libsasl2-modules
libltdl-dev xml-core libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data
d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism file gettext
gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13
libbpp-core-dev libbpp-core3 libbpp-seq-dev libbpp-seq11 libbsd0 libcroco3
libcurl3 libexpat1 libffi6 libfile-stripnondeterminism-perl libglib2.0-0
libgnutls30 libgssapi-krb5-2 libhogweed4 libicu57 libidn2-0 libjsoncpp1
libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.4-2
libldap-common liblzo2-2 libmagic-mgc libmagic1 libnettle6 libnghttp2-14
libp11-kit0 libpipeline1 libpsl5 librtmp1 libsasl2-2 libsasl2-modules-db
libsigsegv2 libssh2-1 libssl1.0.2 libtasn1-6 libtimedate-perl libtool
libunistring2 libuv1 libxml2 m4 man-db po-debconf
sbuild-build-depends-libbpp-phyl-dummy
0 upgraded, 65 newly installed, 0 to remove and 49 not upgraded.
Need to get 30.4 MB of archives.
After this operation, 133 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-6rHNDm/apt_archive ./ sbuild-build-depends-libbpp-phyl-dummy 0.invalid.0 [812 B]
Get:2 http://172.17.0.1/private buster-staging/main armhf groff-base armhf 1.22.3-9 [1005 kB]
Get:3 http://172.17.0.1/private buster-staging/main armhf libbsd0 armhf 0.8.6-1 [95.7 kB]
Get:4 http://172.17.0.1/private buster-staging/main armhf bsdmainutils armhf 9.0.12+nmu1 [178 kB]
Get:5 http://172.17.0.1/private buster-staging/main armhf libpipeline1 armhf 1.4.2-1 [24.2 kB]
Get:6 http://172.17.0.1/private buster-staging/main armhf man-db armhf 2.7.6.1-2 [1014 kB]
Get:7 http://172.17.0.1/private buster-staging/main armhf cmake-data all 3.7.2-1 [1216 kB]
Get:8 http://172.17.0.1/private buster-staging/main armhf liblzo2-2 armhf 2.08-1.2 [47.6 kB]
Get:9 http://172.17.0.1/private buster-staging/main armhf libnettle6 armhf 3.3-1 [204 kB]
Get:10 http://172.17.0.1/private buster-staging/main armhf libicu57 armhf 57.1-6 [7427 kB]
Get:11 http://172.17.0.1/private buster-staging/main armhf libxml2 armhf 2.9.4+dfsg1-3 [601 kB]
Get:12 http://172.17.0.1/private buster-staging/main armhf libarchive13 armhf 3.2.2-2 [254 kB]
Get:13 http://172.17.0.1/private buster-staging/main armhf libkeyutils1 armhf 1.5.9-9 [11.9 kB]
Get:14 http://172.17.0.1/private buster-staging/main armhf libkrb5support0 armhf 1.15.1-1 [58.3 kB]
Get:15 http://172.17.0.1/private buster-staging/main armhf libk5crypto3 armhf 1.15.1-1 [115 kB]
Get:16 http://172.17.0.1/private buster-staging/main armhf libkrb5-3 armhf 1.15.1-1 [263 kB]
Get:17 http://172.17.0.1/private buster-staging/main armhf libgssapi-krb5-2 armhf 1.15.1-1 [132 kB]
Get:18 http://172.17.0.1/private buster-staging/main armhf libunistring2 armhf 0.9.7-2 [351 kB]
Get:19 http://172.17.0.1/private buster-staging/main armhf libidn2-0 armhf 2.0.2-1 [55.7 kB]
Get:20 http://172.17.0.1/private buster-staging/main armhf libhogweed4 armhf 3.3-1 [126 kB]
Get:21 http://172.17.0.1/private buster-staging/main armhf libffi6 armhf 3.2.1-6 [18.7 kB]
Get:22 http://172.17.0.1/private buster-staging/main armhf libp11-kit0 armhf 0.23.3-5 [94.6 kB]
Get:23 http://172.17.0.1/private buster-staging/main armhf libtasn1-6 armhf 4.12-2 [46.0 kB]
Get:24 http://172.17.0.1/private buster-staging/main armhf libgnutls30 armhf 3.5.14-2 [806 kB]
Get:25 http://172.17.0.1/private buster-staging/main armhf libsasl2-modules-db armhf 2.1.27~101-g0780600+dfsg-3 [66.9 kB]
Get:26 http://172.17.0.1/private buster-staging/main armhf libsasl2-2 armhf 2.1.27~101-g0780600+dfsg-3 [98.1 kB]
Get:27 http://172.17.0.1/private buster-staging/main armhf libldap-common all 2.4.44+dfsg-8 [85.3 kB]
Get:28 http://172.17.0.1/private buster-staging/main armhf libldap-2.4-2 armhf 2.4.44+dfsg-8 [195 kB]
Get:29 http://172.17.0.1/private buster-staging/main armhf libnghttp2-14 armhf 1.24.0-1 [70.4 kB]
Get:30 http://172.17.0.1/private buster-staging/main armhf libpsl5 armhf 0.17.0-5 [42.0 kB]
Get:31 http://172.17.0.1/private buster-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-1 [54.2 kB]
Get:32 http://172.17.0.1/private buster-staging/main armhf libssh2-1 armhf 1.8.0-1 [126 kB]
Get:33 http://172.17.0.1/private buster-staging/main armhf libssl1.0.2 armhf 1.0.2l-2 [893 kB]
Get:34 http://172.17.0.1/private buster-staging/main armhf libcurl3 armhf 7.52.1-5 [261 kB]
Get:35 http://172.17.0.1/private buster-staging/main armhf libexpat1 armhf 2.2.2-2 [66.3 kB]
Get:36 http://172.17.0.1/private buster-staging/main armhf libjsoncpp1 armhf 1.7.4-3 [66.2 kB]
Get:37 http://172.17.0.1/private buster-staging/main armhf libuv1 armhf 1.9.1-3 [73.2 kB]
Get:38 http://172.17.0.1/private buster-staging/main armhf cmake armhf 3.7.2-1 [2402 kB]
Get:39 http://172.17.0.1/private buster-staging/main armhf libmagic-mgc armhf 1:5.30-1 [222 kB]
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Get:41 http://172.17.0.1/private buster-staging/main armhf file armhf 1:5.30-1 [63.4 kB]
Get:42 http://172.17.0.1/private buster-staging/main armhf gettext-base armhf 0.19.8.1-2+b1 [117 kB]
Get:43 http://172.17.0.1/private buster-staging/main armhf libsigsegv2 armhf 2.11-1 [29.3 kB]
Get:44 http://172.17.0.1/private buster-staging/main armhf m4 armhf 1.4.18-1 [185 kB]
Get:45 http://172.17.0.1/private buster-staging/main armhf autoconf all 2.69-10 [338 kB]
Get:46 http://172.17.0.1/private buster-staging/main armhf autotools-dev all 20161112.1 [73.4 kB]
Get:47 http://172.17.0.1/private buster-staging/main armhf automake all 1:1.15.1-2 [736 kB]
Get:48 http://172.17.0.1/private buster-staging/main armhf autopoint all 0.19.8.1-2 [433 kB]
Get:49 http://172.17.0.1/private buster-staging/main armhf d-shlibs all 0.81 [18.7 kB]
Get:50 http://172.17.0.1/private buster-staging/main armhf libtool all 2.4.6-2 [545 kB]
Get:51 http://172.17.0.1/private buster-staging/main armhf dh-autoreconf all 14 [15.9 kB]
Get:52 http://172.17.0.1/private buster-staging/main armhf libarchive-zip-perl all 1.59-1 [95.5 kB]
Get:53 http://172.17.0.1/private buster-staging/main armhf libfile-stripnondeterminism-perl all 0.038-1 [17.6 kB]
Get:54 http://172.17.0.1/private buster-staging/main armhf libtimedate-perl all 2.3000-2 [42.2 kB]
Get:55 http://172.17.0.1/private buster-staging/main armhf dh-strip-nondeterminism all 0.038-1 [11.1 kB]
Get:56 http://172.17.0.1/private buster-staging/main armhf libglib2.0-0 armhf 2.52.3-1 [2576 kB]
Get:57 http://172.17.0.1/private buster-staging/main armhf libcroco3 armhf 0.6.12-1 [132 kB]
Get:58 http://172.17.0.1/private buster-staging/main armhf gettext armhf 0.19.8.1-2+b1 [1220 kB]
Get:59 http://172.17.0.1/private buster-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:60 http://172.17.0.1/private buster-staging/main armhf po-debconf all 1.0.20 [247 kB]
Get:61 http://172.17.0.1/private buster-staging/main armhf debhelper all 10.2.5 [961 kB]
Get:62 http://172.17.0.1/private buster-staging/main armhf libbpp-core3 armhf 2.3.1-4 [531 kB]
Get:63 http://172.17.0.1/private buster-staging/main armhf libbpp-core-dev armhf 2.3.1-4 [952 kB]
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Get:65 http://172.17.0.1/private buster-staging/main armhf libbpp-seq-dev armhf 2.3.1-7 [1668 kB]
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Setting up libbpp-core3:armhf (2.3.1-4) ...
Setting up libsasl2-2:armhf (2.1.27~101-g0780600+dfsg-3) ...
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Setting up gettext-base (0.19.8.1-2+b1) ...
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Setting up libbsd0:armhf (0.8.6-1) ...
Setting up libxml2:armhf (2.9.4+dfsg1-3) ...
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Setting up libmagic-mgc (1:5.30-1) ...
Setting up libmagic1:armhf (1:5.30-1) ...
Setting up libhogweed4:armhf (3.3-1) ...
Setting up libssl1.0.2:armhf (1.0.2l-2) ...
Setting up libssh2-1:armhf (1.8.0-1) ...
Processing triggers for libc-bin (2.24-12) ...
Setting up autotools-dev (20161112.1) ...
Setting up libffi6:armhf (3.2.1-6) ...
Setting up libkeyutils1:armhf (1.5.9-9) ...
Setting up bsdmainutils (9.0.12+nmu1) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up autopoint (0.19.8.1-2) ...
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Setting up libfile-stripnondeterminism-perl (0.038-1) ...
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Setting up libbpp-seq11:armhf (2.3.1-7) ...
Setting up libarchive13:armhf (3.2.2-2) ...
Setting up libbpp-core-dev (2.3.1-4) ...
Setting up libglib2.0-0:armhf (2.52.3-1) ...
No schema files found: doing nothing.
Setting up autoconf (2.69-10) ...
Setting up file (1:5.30-1) ...
Setting up libkrb5support0:armhf (1.15.1-1) ...
Setting up libcroco3:armhf (0.6.12-1) ...
Setting up libp11-kit0:armhf (0.23.3-5) ...
Setting up automake (1:1.15.1-2) ...
update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode
Setting up man-db (2.7.6.1-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libtool (2.4.6-2) ...
Setting up libk5crypto3:armhf (1.15.1-1) ...
Setting up libbpp-seq-dev (2.3.1-7) ...
Setting up gettext (0.19.8.1-2+b1) ...
Setting up libgnutls30:armhf (3.5.14-2) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-1) ...
Setting up intltool-debian (0.35.0+20060710.4) ...
Setting up libldap-2.4-2:armhf (2.4.44+dfsg-8) ...
Setting up libkrb5-3:armhf (1.15.1-1) ...
Setting up po-debconf (1.0.20) ...
Setting up libgssapi-krb5-2:armhf (1.15.1-1) ...
Setting up libcurl3:armhf (7.52.1-5) ...
Setting up cmake (3.7.2-1) ...
Setting up dh-strip-nondeterminism (0.038-1) ...
Setting up debhelper (10.2.5) ...
Setting up dh-autoreconf (14) ...
Setting up sbuild-build-depends-libbpp-phyl-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.24-12) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.2-armmp armhf (armv7l)
Toolchain package versions: binutils_2.28-6 dpkg-dev_1.18.24 g++-6_6.3.0-18+rpi1 gcc-6_6.3.0-18+rpi1 libc6-dev_2.24-12 libstdc++-6-dev_6.3.0-18+rpi1 libstdc++6_6.3.0-18+rpi1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch
Package versions: adduser_3.115 apt_1.4.6 autoconf_2.69-10 automake_1:1.15.1-2 autopoint_0.19.8.1-2 autotools-dev_20161112.1 base-files_9.9+rpi1 base-passwd_3.5.43 bash_4.4-5 binutils_2.28-6 bsdmainutils_9.0.12+nmu1 bsdutils_1:2.29.2-1 build-essential_12.3 bzip2_1.0.6-8.1 cmake_3.7.2-1 cmake-data_3.7.2-1 coreutils_8.26-3 cpio_2.11+dfsg-6 cpp_4:6.3.0-4 cpp-6_6.3.0-18+rpi1 d-shlibs_0.81 dash_0.5.8-2.4 debconf_1.5.61 debhelper_10.2.5 debianutils_4.8.1.1 dh-autoreconf_14 dh-strip-nondeterminism_0.038-1 diffutils_1:3.5-3 dmsetup_2:1.02.137-2 dpkg_1.18.24 dpkg-dev_1.18.24 e2fslibs_1.43.4-2 e2fsprogs_1.43.4-2 fakeroot_1.21-3.1 file_1:5.30-1 findutils_4.6.0+git+20161106-2 g++_4:6.3.0-4 g++-6_6.3.0-18+rpi1 gcc_4:6.3.0-4 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.3-14 gcc-5-base_5.4.1-4 gcc-6_6.3.0-18+rpi1 gcc-6-base_6.3.0-18+rpi1 gettext_0.19.8.1-2+b1 gettext-base_0.19.8.1-2+b1 gnupg_2.1.18-8 gnupg-agent_2.1.18-8 gpgv_2.1.18-8 grep_2.27-2 groff-base_1.22.3-9 gzip_1.6-5 hostname_3.18 init-system-helpers_1.48 initramfs-tools_0.130 initramfs-tools-core_0.130 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-9+rpi1 kmod_24-1 libacl1_2.2.52-3 libapparmor1_2.11.0-3 libapt-pkg5.0_1.4.6 libarchive-zip-perl_1.59-1 libarchive13_3.2.2-2 libasan3_6.3.0-18+rpi1 libassuan0_2.4.3-2 libatomic1_6.3.0-18+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.7.7-1 libaudit1_1:2.7.7-1 libblkid1_2.29.2-1 libbpp-core-dev_2.3.1-4 libbpp-core3_2.3.1-4 libbpp-seq-dev_2.3.1-7 libbpp-seq11_2.3.1-7 libbsd0_0.8.6-1 libbz2-1.0_1.0.6-8.1 libc-bin_2.24-12 libc-dev-bin_2.24-12 libc6_2.24-12 libc6-dev_2.24-12 libcap-ng0_0.7.7-3 libcap2_1:2.25-1 libcc1-0_6.3.0-18+rpi1 libcomerr2_1.43.4-2 libcroco3_0.6.12-1 libcryptsetup4_2:1.7.3-4 libcurl3_7.52.1-5 libdb5.3_5.3.28-12 libdbus-1-3_1.10.18-1 libdebconfclient0_0.228 libdevmapper1.02.1_2:1.02.137-2 libdpkg-perl_1.18.24 libdrm2_2.4.74-1 libexpat1_2.2.2-2 libfakeroot_1.21-3.1 libfdisk1_2.29.2-1 libffi6_3.2.1-6 libfile-stripnondeterminism-perl_0.038-1 libgcc-6-dev_6.3.0-18+rpi1 libgcc1_1:6.3.0-18+rpi1 libgcrypt20_1.7.7-2 libgdbm3_1.8.3-14 libglib2.0-0_2.52.3-1 libgmp10_2:6.1.2+dfsg-1 libgnutls30_3.5.14-2 libgomp1_6.3.0-18+rpi1 libgpg-error0_1.26-2 libgssapi-krb5-2_1.15.1-1 libhogweed4_3.3-1 libicu57_57.1-6 libidn11_1.33-1 libidn2-0_2.0.2-1 libip4tc0_1.6.0+snapshot20161117-6 libisl15_0.18-1 libjsoncpp1_1.7.4-3 libk5crypto3_1.15.1-1 libkeyutils1_1.5.9-9 libklibc_2.0.4-9+rpi1 libkmod2_24-1 libkrb5-3_1.15.1-1 libkrb5support0_1.15.1-1 libksba8_1.3.5-2 libldap-2.4-2_2.4.44+dfsg-8 libldap-common_2.4.44+dfsg-8 liblocale-gettext-perl_1.07-3+b1 liblz4-1_0.0~r131-2 liblzma5_5.2.2-1.2 liblzo2-2_2.08-1.2 libmagic-mgc_1:5.30-1 libmagic1_1:5.30-1 libmount1_2.29.2-1 libmpc3_1.0.3-1 libmpfr4_3.1.5-1 libncurses5_6.0+20161126-1 libncursesw5_6.0+20161126-1 libnettle6_3.3-1 libnghttp2-14_1.24.0-1 libnih-dbus1_1.0.3-8 libnih1_1.0.3-8 libnpth0_1.3-1 libp11-kit0_0.23.3-5 libpam-modules_1.1.8-3.6 libpam-modules-bin_1.1.8-3.6 libpam-runtime_1.1.8-3.6 libpam0g_1.1.8-3.6 libpcre3_2:8.39-3 libperl5.24_5.24.1-4 libpipeline1_1.4.2-1 libplymouth4_0.9.2-4 libpng16-16_1.6.29-3 libprocps6_2:3.3.12-3 libpsl5_0.17.0-5 libreadline7_7.0-3 librtmp1_2.4+20151223.gitfa8646d.1-1 libsasl2-2_2.1.27~101-g0780600+dfsg-3 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3 libseccomp2_2.3.1-2.1 libselinux1_2.6-3 libsemanage-common_2.6-2 libsemanage1_2.6-2 libsepol1_2.6-2 libsigsegv2_2.11-1 libsmartcols1_2.29.2-1 libsqlite3-0_3.16.2-5 libss2_1.43.4-2 libssh2-1_1.8.0-1 libssl1.0.2_1.0.2l-2 libstdc++-6-dev_6.3.0-18+rpi1 libstdc++6_6.3.0-18+rpi1 libsystemd0_233-9 libtasn1-6_4.12-2 libtext-charwidth-perl_0.04-7+b7 libtext-iconv-perl_1.7-5+b8 libtext-wrapi18n-perl_0.06-7.1 libtimedate-perl_2.3000-2 libtinfo5_6.0+20161126-1 libtool_2.4.6-2 libubsan0_6.3.0-18+rpi1 libudev1_233-9 libunistring2_0.9.7-2 libustr-1.0-1_1.0.4-6 libuuid1_2.29.2-1 libuv1_1.9.1-3 libxml2_2.9.4+dfsg1-3 linux-base_4.5 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch login_1:4.4-4.1 lsb-base_9.20161125+rpi1 m4_1.4.18-1 make_4.1-9.1 makedev_2.3.1-93 man-db_2.7.6.1-2 mawk_1.3.3-17 mount_2.29.2-1 mountall_2.54 multiarch-support_2.24-12 ncurses-base_6.0+20161126-1 ncurses-bin_6.0+20161126-1 passwd_1:4.4-4.1 patch_2.7.5-1 perl_5.24.1-4 perl-base_5.24.1-4 perl-modules-5.24_5.24.1-4 pinentry-curses_1.0.0-2 plymouth_0.9.2-4 po-debconf_1.0.20 procps_2:3.3.12-3 raspbian-archive-keyring_20120528.2 readline-common_7.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-libbpp-phyl-dummy_0.invalid.0 sed_4.4-1 sensible-utils_0.0.9 systemd_233-9 sysvinit-utils_2.88dsf-59.9 tar_1.29b-1.1 tzdata_2017b-2 udev_233-9 util-linux_2.29.2-1 xz-utils_5.2.2-1.2 zlib1g_1:1.2.8.dfsg-5
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Mon Jul 17 07:58:04 2017 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tillea@rki.de"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./libbpp-phyl_2.3.1-9.dsc
dpkg-source: info: extracting libbpp-phyl in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking libbpp-phyl_2.3.1.orig.tar.gz
dpkg-source: info: unpacking libbpp-phyl_2.3.1-9.debian.tar.xz
dpkg-source: info: applying relax_test_timeout.patch
dpkg-source: info: applying 0002-Fixed-unit-tests-compilation-on-some-platforms.patch
dpkg-source: info: applying remove_deprecated_warnings.patch
dpkg-source: info: applying test_likelihood_clock.patch
dpkg-source: info: applying test_mapping.patch
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=root
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=buster-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=buster-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=buster-staging-armhf-sbuild-0d62756b-fd00-4c0e-b299-71013c8dd9b8
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=xterm
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package libbpp-phyl
dpkg-buildpackage: info: source version 2.3.1-9
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build libbpp-phyl-2.3.1
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean
dh_testdir
dh_auto_clean
dh_autoreconf_clean
dh_clean
debian/rules build-arch
dh build-arch
dh_testdir -a
dh_update_autotools_config -a
dh_autoreconf -a
dh_auto_configure -a
cmake .. -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var
-- The CXX compiler identification is GNU 6.3.0
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- bpp-core 3.0.0 found:
-- static lib: /usr/lib/arm-linux-gnueabihf/libbpp-core.a
-- shared lib: /usr/lib/arm-linux-gnueabihf/libbpp-core.so.3.0.0
-- includes: /usr/include
-- bpp-seq 11.0.0 found:
-- static lib: /usr/lib/arm-linux-gnueabihf/libbpp-seq.a
-- shared lib: /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.11.0.0
-- includes: /usr/include
-- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE)
-- Configuring done
-- Generating done
-- Build files have been written to: /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf
dh_auto_build -a
make -j4
make[1]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
/usr/bin/cmake -H/<<PKGBUILDDIR>> -B/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[2]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f src/CMakeFiles/bpp-phyl-shared.dir/build.make src/CMakeFiles/bpp-phyl-shared.dir/depend
make -f src/CMakeFiles/bpp-phyl-static.dir/build.make src/CMakeFiles/bpp-phyl-static.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/CMakeFiles/bpp-phyl-static.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/CMakeFiles/bpp-phyl-shared.dir/DependInfo.cmake --color=
Scanning dependencies of target bpp-phyl-shared
Scanning dependencies of target bpp-phyl-static
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f src/CMakeFiles/bpp-phyl-shared.dir/build.make src/CMakeFiles/bpp-phyl-shared.dir/build
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f src/CMakeFiles/bpp-phyl-static.dir/build.make src/CMakeFiles/bpp-phyl-static.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 0%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/BipartitionList.cpp.o
[ 0%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/BipartitionList.cpp.o
[ 0%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp.o
[ 0%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/BipartitionList.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/BipartitionList.cpp
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/BipartitionList.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/BipartitionList.cpp
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/BipartitionList.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/BipartitionList.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/BipartitionList.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/BipartitionList.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/BipartitionList.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/BipartitionList.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/BipartitionList.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/BipartitionList.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/BipartitionList.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/BipartitionList.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/BipartitionList.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/BipartitionList.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 0%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/BipartitionTools.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/BipartitionTools.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/BipartitionTools.cpp
[ 0%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/BipartitionTools.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/BipartitionTools.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/BipartitionTools.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp:41:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/map:61:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../Tree.h:51,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp:41:
/usr/include/c++/6/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_map.h:502:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/map:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../Tree.h:51,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp:41:
/usr/include/c++/6/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<int&&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_tree.h:2193:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp:41:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp:41:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/map:61:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../Tree.h:51,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp:41:
/usr/include/c++/6/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_map.h:502:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
In file included from /usr/include/c++/6/map:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../Tree.h:51,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp:41:
/usr/include/c++/6/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_tree.h:1928:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 1%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.cpp
[ 2%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.cpp
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp:41:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/map:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../Tree.h:51,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp:41:
/usr/include/c++/6/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<int&&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_tree.h:2193:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp:41:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp:41:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp:41:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/map:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../Tree.h:51,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp:41:
/usr/include/c++/6/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_tree.h:1928:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp:41:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp:41:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp:41:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp:41:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
[ 2%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Distance/BioNJ.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Distance/BioNJ.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/BioNJ.cpp
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp:41:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 2%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/BioNJ.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/BioNJ.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/BioNJ.cpp
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.cpp:41:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.cpp:41:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.cpp:41:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.cpp:41:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 2%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Distance/DistanceEstimation.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Distance/DistanceEstimation.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/BioNJ.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/BioNJ.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/BioNJ.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/BioNJ.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
[ 2%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Distance/HierarchicalClustering.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Distance/HierarchicalClustering.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/HierarchicalClustering.cpp
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/BioNJ.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/BioNJ.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/BioNJ.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/BioNJ.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/BioNJ.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/BioNJ.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/BioNJ.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/BioNJ.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/BioNJ.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/BioNJ.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/BioNJ.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/BioNJ.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/BioNJ.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/BioNJ.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
[ 2%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/DistanceEstimation.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/DistanceEstimation.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.cpp
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/BioNJ.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/BioNJ.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/BioNJ.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/BioNJ.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/BioNJ.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/BioNJ.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/BioNJ.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/BioNJ.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/BioNJ.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/BioNJ.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 3%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Distance/NeighborJoining.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Distance/NeighborJoining.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.cpp
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/HierarchicalClustering.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/HierarchicalClustering.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/HierarchicalClustering.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/HierarchicalClustering.cpp:41:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/HierarchicalClustering.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/HierarchicalClustering.cpp:41:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/HierarchicalClustering.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/HierarchicalClustering.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/HierarchicalClustering.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/HierarchicalClustering.cpp:41:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/HierarchicalClustering.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/HierarchicalClustering.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/HierarchicalClustering.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/HierarchicalClustering.cpp:41:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/HierarchicalClustering.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/HierarchicalClustering.cpp:41:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/HierarchicalClustering.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/HierarchicalClustering.cpp:41:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/HierarchicalClustering.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/HierarchicalClustering.cpp:41:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.cpp:41:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:41:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:41:
/usr/include/c++/6/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__x.end());
^
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
^~~
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:41:
/usr/include/c++/6/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1225:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
^~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:41:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:41:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:151:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(__first, __last);
^~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.cpp:41:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.cpp:41:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.cpp:41:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.cpp:41:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:41:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:41:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:41:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:126:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:41:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:41:
/usr/include/c++/6/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:41:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:41:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:41:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 4%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/HierarchicalClustering.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/HierarchicalClustering.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/HierarchicalClustering.cpp
[ 4%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/NeighborJoining.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/NeighborJoining.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.cpp
[ 4%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Distance/PGMA.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Distance/PGMA.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/PGMA.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:41:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:41:
/usr/include/c++/6/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__x.end());
^
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:41:
/usr/include/c++/6/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1225:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
^~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:41:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:41:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:151:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(__first, __last);
^~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:41:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:41:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:41:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:126:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:41:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:41:
/usr/include/c++/6/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:41:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:41:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:41:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 4%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Graphics/AbstractDendrogramPlot.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Graphics/AbstractDendrogramPlot.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractDendrogramPlot.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.cpp:41:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.cpp:41:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.cpp:41:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.cpp:41:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/NeighborJoining.cpp:41:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 5%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Graphics/AbstractTreeDrawing.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Graphics/AbstractTreeDrawing.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.cpp
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/PGMA.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/PGMA.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/HierarchicalClustering.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/HierarchicalClustering.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/HierarchicalClustering.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/HierarchicalClustering.cpp:41:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/PGMA.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/PGMA.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/PGMA.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/PGMA.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/PGMA.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/PGMA.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/HierarchicalClustering.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/HierarchicalClustering.cpp:41:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/HierarchicalClustering.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/HierarchicalClustering.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/HierarchicalClustering.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/HierarchicalClustering.cpp:41:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/PGMA.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/PGMA.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/PGMA.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/PGMA.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/HierarchicalClustering.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/HierarchicalClustering.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/PGMA.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/PGMA.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/HierarchicalClustering.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/HierarchicalClustering.cpp:41:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/PGMA.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/PGMA.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/PGMA.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/PGMA.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/HierarchicalClustering.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/HierarchicalClustering.cpp:41:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/HierarchicalClustering.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/HierarchicalClustering.cpp:41:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/PGMA.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/PGMA.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/HierarchicalClustering.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/HierarchicalClustering.cpp:41:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
[ 5%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/PGMA.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/PGMA.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/PGMA.cpp
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeTemplate.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractDendrogramPlot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractDendrogramPlot.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
[ 5%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Graphics/CladogramPlot.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Graphics/CladogramPlot.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/CladogramPlot.cpp
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeTemplate.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractDendrogramPlot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractDendrogramPlot.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeTemplate.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractDendrogramPlot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractDendrogramPlot.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 5%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Graphics/AbstractDendrogramPlot.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Graphics/AbstractDendrogramPlot.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractDendrogramPlot.cpp
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeTemplate.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeTemplate.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeTemplate.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 5%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Graphics/PhylogramPlot.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Graphics/PhylogramPlot.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/PhylogramPlot.cpp
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/PGMA.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/PGMA.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/PGMA.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/PGMA.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/PGMA.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/PGMA.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/PGMA.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/PGMA.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/PGMA.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/PGMA.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/PGMA.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/PGMA.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/PGMA.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/PGMA.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/PGMA.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/PGMA.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/PGMA.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/PGMA.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/DistanceMethod.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/PGMA.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Distance/PGMA.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/CladogramPlot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/CladogramPlot.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/CladogramPlot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/CladogramPlot.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeTemplate.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractDendrogramPlot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractDendrogramPlot.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/CladogramPlot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/CladogramPlot.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeTemplate.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractDendrogramPlot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractDendrogramPlot.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeTemplate.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractDendrogramPlot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractDendrogramPlot.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 6%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Graphics/AbstractTreeDrawing.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Graphics/AbstractTreeDrawing.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.cpp
[ 6%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Graphics/TreeDrawingDisplayControler.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Graphics/TreeDrawingDisplayControler.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/TreeDrawingDisplayControler.cpp
[ 7%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Graphics/TreeDrawingListener.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Graphics/TreeDrawingListener.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/TreeDrawingListener.cpp
[ 7%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Graphics/CladogramPlot.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Graphics/CladogramPlot.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/CladogramPlot.cpp
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeTemplate.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractDendrogramPlot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/PhylogramPlot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/PhylogramPlot.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeTemplate.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractDendrogramPlot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/PhylogramPlot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/PhylogramPlot.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeTemplate.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractDendrogramPlot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/PhylogramPlot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/PhylogramPlot.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 7%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Graphics/PhylogramPlot.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Graphics/PhylogramPlot.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/PhylogramPlot.cpp
[ 7%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeTemplate.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeTemplate.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeTemplate.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 8%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Graphics/TreeDrawingDisplayControler.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Graphics/TreeDrawingDisplayControler.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/TreeDrawingDisplayControler.cpp
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/CladogramPlot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/CladogramPlot.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/CladogramPlot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/CladogramPlot.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/CladogramPlot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/CladogramPlot.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 8%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Graphics/TreeDrawingListener.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Graphics/TreeDrawingListener.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/TreeDrawingListener.cpp
[ 8%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeTemplate.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractDendrogramPlot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/PhylogramPlot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/PhylogramPlot.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeTemplate.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractDendrogramPlot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/PhylogramPlot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/PhylogramPlot.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/../TreeTemplate.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/AbstractDendrogramPlot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/PhylogramPlot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Graphics/PhylogramPlot.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 8%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppOMultiTreeReaderFormat.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppOMultiTreeReaderFormat.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOMultiTreeReaderFormat.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoFrequenciesSetFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoFrequenciesSetFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoFrequenciesSetFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoFrequenciesSetFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoFrequenciesSetFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoFrequenciesSetFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoFrequenciesSetFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoFrequenciesSetFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoFrequenciesSetFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoFrequenciesSetFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 8%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOMultiTreeReaderFormat.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOMultiTreeReaderFormat.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOMultiTreeReaderFormat.cpp
[ 9%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppOMultiTreeWriterFormat.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppOMultiTreeWriterFormat.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOMultiTreeWriterFormat.cpp
[ 9%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppORateDistributionFormat.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppORateDistributionFormat.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoFrequenciesSetFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoFrequenciesSetFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoFrequenciesSetFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoFrequenciesSetFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoFrequenciesSetFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoFrequenciesSetFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoFrequenciesSetFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoFrequenciesSetFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoFrequenciesSetFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
[ 10%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOMultiTreeWriterFormat.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOMultiTreeWriterFormat.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOMultiTreeWriterFormat.cpp
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoFrequenciesSetFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 10%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp
[ 10%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppOTransitionModelFormat.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppOTransitionModelFormat.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOTransitionModelFormat.cpp
In file included from /usr/include/c++/6/vector:69:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Io/IoDiscreteDistributionFactory.h:43,
from /usr/include/Bpp/Io/BppODiscreteDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:40:
/usr/include/c++/6/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__x.end());
^
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
^~~
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Io/IoDiscreteDistributionFactory.h:43,
from /usr/include/Bpp/Io/BppODiscreteDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1225:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
^~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Io/IoDiscreteDistributionFactory.h:43,
from /usr/include/Bpp/Io/BppODiscreteDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Io/IoDiscreteDistributionFactory.h:43,
from /usr/include/Bpp/Io/BppODiscreteDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:151:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(__first, __last);
^~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Io/IoDiscreteDistributionFactory.h:43,
from /usr/include/Bpp/Io/BppODiscreteDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Io/IoDiscreteDistributionFactory.h:43,
from /usr/include/Bpp/Io/BppODiscreteDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Io/IoDiscreteDistributionFactory.h:43,
from /usr/include/Bpp/Io/BppODiscreteDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Io/IoDiscreteDistributionFactory.h:43,
from /usr/include/Bpp/Io/BppODiscreteDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:126:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Io/IoDiscreteDistributionFactory.h:43,
from /usr/include/Bpp/Io/BppODiscreteDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Io/IoDiscreteDistributionFactory.h:43,
from /usr/include/Bpp/Io/BppODiscreteDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Io/IoDiscreteDistributionFactory.h:43,
from /usr/include/Bpp/Io/BppODiscreteDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Io/IoDiscreteDistributionFactory.h:43,
from /usr/include/Bpp/Io/BppODiscreteDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Io/IoDiscreteDistributionFactory.h:43,
from /usr/include/Bpp/Io/BppODiscreteDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Io/IoDiscreteDistributionFactory.h:43,
from /usr/include/Bpp/Io/BppODiscreteDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Io/IoDiscreteDistributionFactory.h:43,
from /usr/include/Bpp/Io/BppODiscreteDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
[ 11%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppOTreeReaderFormat.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppOTreeReaderFormat.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOTreeReaderFormat.cpp
[ 11%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppORateDistributionFormat.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppORateDistributionFormat.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp
[ 11%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppOTreeWriterFormat.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppOTreeWriterFormat.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOTreeWriterFormat.cpp
[ 11%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/IoDistanceMatrixFactory.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/IoDistanceMatrixFactory.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoDistanceMatrixFactory.cpp
In file included from /usr/include/c++/6/vector:69:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Io/IoDiscreteDistributionFactory.h:43,
from /usr/include/Bpp/Io/BppODiscreteDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:40:
/usr/include/c++/6/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__x.end());
^
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
^~~
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Io/IoDiscreteDistributionFactory.h:43,
from /usr/include/Bpp/Io/BppODiscreteDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1225:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
^~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Io/IoDiscreteDistributionFactory.h:43,
from /usr/include/Bpp/Io/BppODiscreteDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Io/IoDiscreteDistributionFactory.h:43,
from /usr/include/Bpp/Io/BppODiscreteDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:151:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(__first, __last);
^~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Io/IoDiscreteDistributionFactory.h:43,
from /usr/include/Bpp/Io/BppODiscreteDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Io/IoDiscreteDistributionFactory.h:43,
from /usr/include/Bpp/Io/BppODiscreteDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Io/IoDiscreteDistributionFactory.h:43,
from /usr/include/Bpp/Io/BppODiscreteDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Io/IoDiscreteDistributionFactory.h:43,
from /usr/include/Bpp/Io/BppODiscreteDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:126:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Io/IoDiscreteDistributionFactory.h:43,
from /usr/include/Bpp/Io/BppODiscreteDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Io/IoDiscreteDistributionFactory.h:43,
from /usr/include/Bpp/Io/BppODiscreteDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Io/IoDiscreteDistributionFactory.h:43,
from /usr/include/Bpp/Io/BppODiscreteDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Io/IoDiscreteDistributionFactory.h:43,
from /usr/include/Bpp/Io/BppODiscreteDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Io/IoDiscreteDistributionFactory.h:43,
from /usr/include/Bpp/Io/BppODiscreteDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Io/IoDiscreteDistributionFactory.h:43,
from /usr/include/Bpp/Io/BppODiscreteDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Io/IoDiscreteDistributionFactory.h:43,
from /usr/include/Bpp/Io/BppODiscreteDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
[ 11%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp
[ 12%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/IoFrequenciesSetFactory.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/IoFrequenciesSetFactory.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoFrequenciesSetFactory.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoSubstitutionModelFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/map:61:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoSubstitutionModelFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp:40:
/usr/include/c++/6/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_map.h:502:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoSubstitutionModelFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
[ 12%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/IoPairedSiteLikelihoods.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/IoPairedSiteLikelihoods.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoPairedSiteLikelihoods.cpp
In file included from /usr/include/c++/6/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoSubstitutionModelFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp:40:
/usr/include/c++/6/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<int&&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_tree.h:2193:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoSubstitutionModelFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoSubstitutionModelFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoSubstitutionModelFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp:40:
/usr/include/c++/6/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_tree.h:1928:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoSubstitutionModelFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoSubstitutionModelFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoSubstitutionModelFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoSubstitutionModelFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoSubstitutionModelFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoSubstitutionModelFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoSubstitutionModelFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 12%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/IoSubstitutionModelFactory.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/IoSubstitutionModelFactory.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoSubstitutionModelFactory.cpp
[ 12%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/IoTreeFactory.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/IoTreeFactory.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoTreeFactory.cpp
In file included from /usr/include/c++/6/vector:69:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoPairedSiteLikelihoods.cpp:41:
/usr/include/c++/6/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::reserve(std::vector<_Tp, _Alloc>::size_type) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:75:70: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(this->_M_impl._M_finish));
^
/usr/include/c++/6/bits/vector.tcc:75:70: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:64:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoPairedSiteLikelihoods.cpp:41:
/usr/include/c++/6/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = std::move_iterator<double*>; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1225:8: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoPairedSiteLikelihoods.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoPairedSiteLikelihoods.cpp:41:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/vector:60,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoPairedSiteLikelihoods.cpp:41:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 13%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/Newick.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/Newick.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/Newick.cpp
[ 13%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/NexusIoTree.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/NexusIoTree.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/NexusIoTree.cpp
[ 13%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/Nhx.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/Nhx.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/Nhx.cpp
[ 14%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoSubstitutionModelFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/map:61:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoSubstitutionModelFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp:40:
/usr/include/c++/6/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_map.h:502:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoSubstitutionModelFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
[ 14%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.cpp
In file included from /usr/include/c++/6/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoSubstitutionModelFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp:40:
/usr/include/c++/6/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<int&&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_tree.h:2193:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoSubstitutionModelFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoSubstitutionModelFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Io/IoFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoDistanceMatrix.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
In file included from /usr/include/c++/6/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoSubstitutionModelFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp:40:
/usr/include/c++/6/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_tree.h:1928:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Io/IoFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoDistanceMatrix.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Io/IoFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoDistanceMatrix.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoSubstitutionModelFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoSubstitutionModelFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Io/IoFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoDistanceMatrix.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Io/IoFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoDistanceMatrix.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Io/IoFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoDistanceMatrix.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Io/IoFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoDistanceMatrix.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Io/IoFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoDistanceMatrix.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Io/IoFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoDistanceMatrix.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Io/IoFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoDistanceMatrix.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Io/IoFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoDistanceMatrix.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoTree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/Nhx.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/Nhx.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoSubstitutionModelFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoSubstitutionModelFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
[ 14%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoSubstitutionModelFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoSubstitutionModelFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoTree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/Nhx.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/Nhx.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoTree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/Nhx.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/Nhx.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoSubstitutionModelFactory.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 14%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp
[ 14%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOTransitionModelFormat.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOTransitionModelFormat.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOTransitionModelFormat.cpp
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 15%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:69:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__x.end());
^
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1225:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
^~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Tp = double]':
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:151:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
_Destroy(__first, __last);
^~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:126:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double>]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:69:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__x.end());
^
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1225:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
^~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Tp = double]':
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:151:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
_Destroy(__first, __last);
^~~~~~~~
[ 15%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:126:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double>]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
[ 16%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOTreeReaderFormat.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOTreeReaderFormat.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOTreeReaderFormat.cpp
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 16%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.cpp
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 17%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp
[ 17%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOTreeWriterFormat.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOTreeWriterFormat.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/BppOTreeWriterFormat.cpp
In file included from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp:41:0:
/<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h: In member function 'void bpp::DRASDRTreeLikelihoodNodeData::eraseNeighborArrays()':
/<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:211:82: note: parameter passing for argument of type 'std::vector<double>::const_iterator {aka __gnu_cxx::__normal_iterator<const double*, std::vector<double> >}' will change in GCC 7.1
nodeDLikelihoods_.erase(nodeDLikelihoods_.begin(), nodeDLikelihoods_.end());
^
/<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:211:82: note: parameter passing for argument of type 'std::vector<double>::const_iterator {aka __gnu_cxx::__normal_iterator<const double*, std::vector<double> >}' will change in GCC 7.1
/<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:211:82: note: parameter passing for argument of type 'std::vector<double>::const_iterator {aka __gnu_cxx::__normal_iterator<const double*, std::vector<double> >}' will change in GCC 7.1
/<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:212:85: note: parameter passing for argument of type 'std::vector<double>::const_iterator {aka __gnu_cxx::__normal_iterator<const double*, std::vector<double> >}' will change in GCC 7.1
nodeD2Likelihoods_.erase(nodeD2Likelihoods_.begin(), nodeD2Likelihoods_.end());
^
/<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:212:85: note: parameter passing for argument of type 'std::vector<double>::const_iterator {aka __gnu_cxx::__normal_iterator<const double*, std::vector<double> >}' will change in GCC 7.1
/<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:212:85: note: parameter passing for argument of type 'std::vector<double>::const_iterator {aka __gnu_cxx::__normal_iterator<const double*, std::vector<double> >}' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp:41:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(std::vector<_Tp, _Alloc>::const_iterator, std::vector<_Tp, _Alloc>::const_iterator) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:1174:7: note: parameter passing for argument of type 'std::vector<double>::const_iterator {aka __gnu_cxx::__normal_iterator<const double*, std::vector<double> >}' will change in GCC 7.1
erase(const_iterator __first, const_iterator __last)
^~~~~
/usr/include/c++/6/bits/stl_vector.h:1174:7: note: parameter passing for argument of type 'std::vector<double>::const_iterator {aka __gnu_cxx::__normal_iterator<const double*, std::vector<double> >}' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1178:71: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
^
/usr/include/c++/6/bits/stl_vector.h:1178:71: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1178:71: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:69:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp:41:
/usr/include/c++/6/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::iterator) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:153:5: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' will change in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:153:5: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp:41:
/usr/include/c++/6/bits/vector.tcc:159:6: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
_GLIBCXX_MOVE3(__last, end(), __first);
^
/usr/include/c++/6/bits/vector.tcc:159:6: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:159:6: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp:41:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp:41:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::move(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_algobase.h:479:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
move(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:479:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:479:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:488:47: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__miter_base(__last), __result);
^
/usr/include/c++/6/bits/stl_algobase.h:488:47: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:488:47: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp:41:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double>]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp:41:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp:41:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = true; _II = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp:41:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp:41:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp:41:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 17%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.cpp:41:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.cpp:41:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.cpp:41:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.cpp:41:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.cpp:41:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.cpp:41:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp: In member function 'virtual double bpp::DRHomogeneousMixedTreeLikelihood::getLogLikelihood() const':
/<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:262:29: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
sort(la.begin(), la.end());
^
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:69:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__x.end());
^
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
^~~
[ 17%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_algo.h:4697:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
sort(_RandomAccessIterator __first, _RandomAccessIterator __last)
^~~~
/usr/include/c++/6/bits/stl_algo.h:4697:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:4707:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__sort(__first, __last, __gnu_cxx::__ops::__iter_less_iter());
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1225:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
^~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Tp = double]':
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:151:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
_Destroy(__first, __last);
^~~~~~~~
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1960:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__sort(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~
/usr/include/c++/6/bits/stl_algo.h:1960:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1965:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__introsort_loop(__first, __last,
^~~
/usr/include/c++/6/bits/stl_algo.h:1968:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__final_insertion_sort(__first, __last, __comp);
^~~
[ 17%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/IoDistanceMatrixFactory.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/IoDistanceMatrixFactory.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoDistanceMatrixFactory.cpp
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:126:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
^~~
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1945:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__partial_sort(__first, __last, __last, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:1945:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1945:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1950:62: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__unguarded_partition_pivot(__first, __last, __comp);
^
/usr/include/c++/6/bits/stl_algo.h:1951:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1877:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__final_insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1877:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1882:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:1883:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__unguarded_insertion_sort(__first + int(_S_threshold), __last,
^~~
/usr/include/c++/6/bits/stl_algo.h:1887:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double>]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__partial_sort(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1925:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__partial_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1925:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1925:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1930:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__heap_select(__first, __middle, __last, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:1930:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1930:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1931:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__sort_heap(__first, __middle, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h: In function '_RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1914:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__unguarded_partition_pivot(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1914:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1918:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__move_median_to_first(__first, __first + 1, __mid, __last - 1,
^~~
/usr/include/c++/6/bits/stl_algo.h:1918:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1918:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1918:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1920:77: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
return std::__unguarded_partition(__first + 1, __last, __first, __comp);
^
/usr/include/c++/6/bits/stl_algo.h:1920:77: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1920:77: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1844:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
if (__comp(__i, __first))
^~
/usr/include/c++/6/bits/stl_algo.h:1844:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1844:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_algo.h:1848:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
_GLIBCXX_MOVE_BACKWARD3(__first, __i, __i + 1);
^
/usr/include/c++/6/bits/stl_algo.h:1848:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1848:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__unguarded_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1860:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__unguarded_insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1860:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1665:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__heap_select(_RandomAccessIterator __first,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1665:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1665:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1669:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__make_heap(__first, __middle, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:1671:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
if (__comp(__i, __first))
^~
/usr/include/c++/6/bits/stl_algo.h:1671:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1671:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1672:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__pop_heap(__first, __middle, __i, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:1672:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1672:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algo.h:61:0,
from /usr/include/c++/6/algorithm:62,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_heap.h: In function 'void std::__sort_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_heap.h:394:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__sort_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~~~~~~
/usr/include/c++/6/bits/stl_heap.h:394:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_heap.h:400:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__pop_heap(__first, __last, __last, __comp);
^~~
/usr/include/c++/6/bits/stl_heap.h:400:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_heap.h:400:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:81:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
if (__comp(__a, __b))
^~
/usr/include/c++/6/bits/stl_algo.h:81:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:81:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:83:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
if (__comp(__b, __c))
^~
/usr/include/c++/6/bits/stl_algo.h:83:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:83:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:84:6: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::iter_swap(__result, __b);
^~~
/usr/include/c++/6/bits/stl_algo.h:85:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
else if (__comp(__a, __c))
^~
/usr/include/c++/6/bits/stl_algo.h:85:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:85:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:86:6: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::iter_swap(__result, __c);
^~~
/usr/include/c++/6/bits/stl_algo.h:88:6: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::iter_swap(__result, __a);
^~~
/usr/include/c++/6/bits/stl_algo.h:90:12: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
else if (__comp(__a, __c))
^~
/usr/include/c++/6/bits/stl_algo.h:90:12: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:90:12: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:91:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::iter_swap(__result, __a);
^~~
/usr/include/c++/6/bits/stl_algo.h:92:12: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
else if (__comp(__b, __c))
^~
/usr/include/c++/6/bits/stl_algo.h:92:12: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:92:12: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:93:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::iter_swap(__result, __c);
^~~
/usr/include/c++/6/bits/stl_algo.h:95:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::iter_swap(__result, __b);
^~~
/usr/include/c++/6/bits/stl_algo.h: In function '_RandomAccessIterator std::__unguarded_partition(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1893:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__unguarded_partition(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1893:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1893:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1899:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
while (__comp(__first, __pivot))
^~~~~
/usr/include/c++/6/bits/stl_algo.h:1899:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1899:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1902:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
while (__comp(__pivot, __last))
^~~~~
/usr/include/c++/6/bits/stl_algo.h:1902:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1902:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1906:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::iter_swap(__first, __last);
^~~
In file included from /usr/include/c++/6/bits/stl_algobase.h:71:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/predefined_ops.h: In member function 'bool __gnu_cxx::__ops::_Iter_less_iter::operator()(_Iterator1, _Iterator2) const [with _Iterator1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Iterator2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/predefined_ops.h:42:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
operator()(_Iterator1 __it1, _Iterator2 __it2) const
^~~~~~~~
/usr/include/c++/6/bits/predefined_ops.h:42:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_BI2 std::move_backward(_BI1, _BI1, _BI2) [with _BI1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _BI2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_algobase.h:658:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
move_backward(_BI1 __first, _BI1 __last, _BI2 __result)
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:658:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:658:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:670:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__result);
^
/usr/include/c++/6/bits/stl_algobase.h:670:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:670:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Val_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1818:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__unguarded_linear_insert(_RandomAccessIterator __last,
^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algo.h:61:0,
from /usr/include/c++/6/algorithm:62,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_heap.h: In function 'void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_heap.h:319:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~~~~~~
/usr/include/c++/6/bits/stl_heap.h:319:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_heap.h: In function 'void std::__pop_heap(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_heap.h:237:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__pop_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~~~~~
/usr/include/c++/6/bits/stl_heap.h:237:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_heap.h:237:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function 'void std::iter_swap(_ForwardIterator1, _ForwardIterator2) [with _ForwardIterator1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _ForwardIterator2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_algobase.h:120:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
iter_swap(_ForwardIterator1 __a, _ForwardIterator2 __b)
^~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:120:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_BI2 std::__copy_move_backward_a2(_BI1, _BI1, _BI2) [with bool _IsMove = true; _BI1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _BI2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_algobase.h:595:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__copy_move_backward_a2(_BI1 __first, _BI1 __last, _BI2 __result)
^~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:595:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:595:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:71:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/predefined_ops.h: In member function 'bool __gnu_cxx::__ops::_Val_less_iter::operator()(_Value&, _Iterator) const [with _Value = double; _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/predefined_ops.h:71:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
operator()(_Value& __val, _Iterator __it) const
^~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algo.h:61:0,
from /usr/include/c++/6/algorithm:62,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_heap.h:209:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_heap.h:217:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
if (__comp(__first + __secondChild,
^~
/usr/include/c++/6/bits/stl_heap.h:217:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_heap.h:217:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/stl_algo.h:61:0,
from /usr/include/c++/6/algorithm:62,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_val]':
/usr/include/c++/6/bits/stl_heap.h:124:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__push_heap(_RandomAccessIterator __first,
^~~~~~~~~~~
/usr/include/c++/6/bits/stl_heap.h:129:48: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
while (__holeIndex > __topIndex && __comp(__first + __parent, __value))
~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/stl_algobase.h:71:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/predefined_ops.h: In member function 'bool __gnu_cxx::__ops::_Iter_less_val::operator()(_Iterator, _Value&) const [with _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Value = double]':
/usr/include/c++/6/bits/predefined_ops.h:55:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
operator()(_Iterator __it, _Value& __val) const
^~~~~~~~
[ 17%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.cpp
/<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp: In member function 'virtual double bpp::DRHomogeneousTreeLikelihood::getLogLikelihood() const':
/<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:182:29: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
sort(la.begin(), la.end());
^
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_algo.h:4697:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
sort(_RandomAccessIterator __first, _RandomAccessIterator __last)
^~~~
/usr/include/c++/6/bits/stl_algo.h:4697:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:4707:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__sort(__first, __last, __gnu_cxx::__ops::__iter_less_iter());
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1960:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__sort(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~
/usr/include/c++/6/bits/stl_algo.h:1960:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1965:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__introsort_loop(__first, __last,
^~~
/usr/include/c++/6/bits/stl_algo.h:1968:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__final_insertion_sort(__first, __last, __comp);
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1945:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__partial_sort(__first, __last, __last, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:1945:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1945:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1950:62: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__unguarded_partition_pivot(__first, __last, __comp);
^
/usr/include/c++/6/bits/stl_algo.h:1951:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1877:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__final_insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1877:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1882:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:1883:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__unguarded_insertion_sort(__first + int(_S_threshold), __last,
^~~
/usr/include/c++/6/bits/stl_algo.h:1887:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double>]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__partial_sort(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1925:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__partial_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1925:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1925:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1930:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__heap_select(__first, __middle, __last, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:1930:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1930:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1931:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__sort_heap(__first, __middle, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h: In function '_RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1914:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__unguarded_partition_pivot(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1914:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1918:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__move_median_to_first(__first, __first + 1, __mid, __last - 1,
^~~
/usr/include/c++/6/bits/stl_algo.h:1918:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1918:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1918:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1920:77: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
return std::__unguarded_partition(__first + 1, __last, __first, __comp);
^
/usr/include/c++/6/bits/stl_algo.h:1920:77: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1920:77: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1844:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
if (__comp(__i, __first))
^~
/usr/include/c++/6/bits/stl_algo.h:1844:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1844:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algo.h:1848:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
_GLIBCXX_MOVE_BACKWARD3(__first, __i, __i + 1);
^
/usr/include/c++/6/bits/stl_algo.h:1848:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1848:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__unguarded_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1860:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__unguarded_insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1860:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1665:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__heap_select(_RandomAccessIterator __first,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1665:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1665:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1669:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__make_heap(__first, __middle, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:1671:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
if (__comp(__i, __first))
^~
/usr/include/c++/6/bits/stl_algo.h:1671:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1671:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1672:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__pop_heap(__first, __middle, __i, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:1672:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1672:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algo.h:61:0,
from /usr/include/c++/6/algorithm:62,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_heap.h: In function 'void std::__sort_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_heap.h:394:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__sort_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~~~~~~
/usr/include/c++/6/bits/stl_heap.h:394:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_heap.h:400:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__pop_heap(__first, __last, __last, __comp);
^~~
/usr/include/c++/6/bits/stl_heap.h:400:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_heap.h:400:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:81:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
if (__comp(__a, __b))
^~
/usr/include/c++/6/bits/stl_algo.h:81:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:81:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:83:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
if (__comp(__b, __c))
^~
/usr/include/c++/6/bits/stl_algo.h:83:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:83:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:84:6: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::iter_swap(__result, __b);
^~~
/usr/include/c++/6/bits/stl_algo.h:85:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
else if (__comp(__a, __c))
^~
/usr/include/c++/6/bits/stl_algo.h:85:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:85:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:86:6: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::iter_swap(__result, __c);
^~~
/usr/include/c++/6/bits/stl_algo.h:88:6: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::iter_swap(__result, __a);
^~~
/usr/include/c++/6/bits/stl_algo.h:90:12: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
else if (__comp(__a, __c))
^~
/usr/include/c++/6/bits/stl_algo.h:90:12: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:90:12: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:91:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::iter_swap(__result, __a);
^~~
/usr/include/c++/6/bits/stl_algo.h:92:12: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
else if (__comp(__b, __c))
^~
/usr/include/c++/6/bits/stl_algo.h:92:12: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:92:12: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:93:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::iter_swap(__result, __c);
^~~
/usr/include/c++/6/bits/stl_algo.h:95:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::iter_swap(__result, __b);
^~~
/usr/include/c++/6/bits/stl_algo.h: In function '_RandomAccessIterator std::__unguarded_partition(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1893:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__unguarded_partition(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1893:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1893:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1899:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
while (__comp(__first, __pivot))
^~~~~
/usr/include/c++/6/bits/stl_algo.h:1899:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1899:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1902:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
while (__comp(__pivot, __last))
^~~~~
/usr/include/c++/6/bits/stl_algo.h:1902:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1902:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1906:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::iter_swap(__first, __last);
^~~
In file included from /usr/include/c++/6/bits/stl_algobase.h:71:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/predefined_ops.h: In member function 'bool __gnu_cxx::__ops::_Iter_less_iter::operator()(_Iterator1, _Iterator2) const [with _Iterator1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Iterator2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/predefined_ops.h:42:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
operator()(_Iterator1 __it1, _Iterator2 __it2) const
^~~~~~~~
/usr/include/c++/6/bits/predefined_ops.h:42:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_BI2 std::move_backward(_BI1, _BI1, _BI2) [with _BI1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _BI2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_algobase.h:658:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
move_backward(_BI1 __first, _BI1 __last, _BI2 __result)
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:658:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:658:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:670:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__result);
^
/usr/include/c++/6/bits/stl_algobase.h:670:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:670:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Val_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1818:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__unguarded_linear_insert(_RandomAccessIterator __last,
^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algo.h:61:0,
from /usr/include/c++/6/algorithm:62,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_heap.h: In function 'void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_heap.h:319:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~~~~~~
/usr/include/c++/6/bits/stl_heap.h:319:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_heap.h: In function 'void std::__pop_heap(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_heap.h:237:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__pop_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~~~~~
/usr/include/c++/6/bits/stl_heap.h:237:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_heap.h:237:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function 'void std::iter_swap(_ForwardIterator1, _ForwardIterator2) [with _ForwardIterator1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _ForwardIterator2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_algobase.h:120:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
iter_swap(_ForwardIterator1 __a, _ForwardIterator2 __b)
^~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:120:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_BI2 std::__copy_move_backward_a2(_BI1, _BI1, _BI2) [with bool _IsMove = true; _BI1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _BI2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_algobase.h:595:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__copy_move_backward_a2(_BI1 __first, _BI1 __last, _BI2 __result)
^~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:595:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:595:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:71:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/predefined_ops.h: In member function 'bool __gnu_cxx::__ops::_Val_less_iter::operator()(_Value&, _Iterator) const [with _Value = double; _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/predefined_ops.h:71:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
operator()(_Value& __val, _Iterator __it) const
^~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algo.h:61:0,
from /usr/include/c++/6/algorithm:62,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_heap.h:209:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_heap.h:217:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
if (__comp(__first + __secondChild,
^~
/usr/include/c++/6/bits/stl_heap.h:217:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_heap.h:217:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/stl_algo.h:61:0,
from /usr/include/c++/6/algorithm:62,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_val]':
/usr/include/c++/6/bits/stl_heap.h:124:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__push_heap(_RandomAccessIterator __first,
^~~~~~~~~~~
/usr/include/c++/6/bits/stl_heap.h:129:48: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
while (__holeIndex > __topIndex && __comp(__first + __parent, __value))
~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/stl_algobase.h:71:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/predefined_ops.h: In member function 'bool __gnu_cxx::__ops::_Iter_less_val::operator()(_Iterator, _Value&) const [with _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Value = double]':
/usr/include/c++/6/bits/predefined_ops.h:55:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
operator()(_Iterator __it, _Value& __val) const
^~~~~~~~
[ 18%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/IoFrequenciesSetFactory.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/IoFrequenciesSetFactory.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoFrequenciesSetFactory.cpp
/<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp: In member function 'virtual double bpp::DRNonHomogeneousTreeLikelihood::getLogLikelihood() const':
/<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:186:29: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
sort(la.begin(), la.end());
^
[ 18%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/IoPairedSiteLikelihoods.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/IoPairedSiteLikelihoods.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoPairedSiteLikelihoods.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_algo.h:4697:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
sort(_RandomAccessIterator __first, _RandomAccessIterator __last)
^~~~
/usr/include/c++/6/bits/stl_algo.h:4697:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:4707:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__sort(__first, __last, __gnu_cxx::__ops::__iter_less_iter());
^~~
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 19%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.cpp
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1960:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__sort(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~
/usr/include/c++/6/bits/stl_algo.h:1960:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1965:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__introsort_loop(__first, __last,
^~~
/usr/include/c++/6/bits/stl_algo.h:1968:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__final_insertion_sort(__first, __last, __comp);
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1945:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__partial_sort(__first, __last, __last, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:1945:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1945:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1950:62: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__unguarded_partition_pivot(__first, __last, __comp);
^
/usr/include/c++/6/bits/stl_algo.h:1951:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1877:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__final_insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1877:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1882:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:1883:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__unguarded_insertion_sort(__first + int(_S_threshold), __last,
^~~
/usr/include/c++/6/bits/stl_algo.h:1887:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double>]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__partial_sort(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1925:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__partial_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1925:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1925:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1930:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__heap_select(__first, __middle, __last, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:1930:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1930:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1931:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__sort_heap(__first, __middle, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h: In function '_RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1914:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__unguarded_partition_pivot(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1914:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1918:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__move_median_to_first(__first, __first + 1, __mid, __last - 1,
^~~
/usr/include/c++/6/bits/stl_algo.h:1918:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1918:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1918:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1920:77: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
return std::__unguarded_partition(__first + 1, __last, __first, __comp);
^
/usr/include/c++/6/bits/stl_algo.h:1920:77: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1920:77: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1844:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
if (__comp(__i, __first))
^~
/usr/include/c++/6/bits/stl_algo.h:1844:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1844:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algo.h:1848:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
_GLIBCXX_MOVE_BACKWARD3(__first, __i, __i + 1);
^
/usr/include/c++/6/bits/stl_algo.h:1848:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1848:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__unguarded_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1860:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__unguarded_insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1860:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1665:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__heap_select(_RandomAccessIterator __first,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1665:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1665:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1669:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__make_heap(__first, __middle, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:1671:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
if (__comp(__i, __first))
^~
/usr/include/c++/6/bits/stl_algo.h:1671:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1671:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1672:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__pop_heap(__first, __middle, __i, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:1672:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1672:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algo.h:61:0,
from /usr/include/c++/6/algorithm:62,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_heap.h: In function 'void std::__sort_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_heap.h:394:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__sort_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~~~~~~
/usr/include/c++/6/bits/stl_heap.h:394:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_heap.h:400:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__pop_heap(__first, __last, __last, __comp);
^~~
/usr/include/c++/6/bits/stl_heap.h:400:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_heap.h:400:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:81:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
if (__comp(__a, __b))
^~
/usr/include/c++/6/bits/stl_algo.h:81:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:81:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:83:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
if (__comp(__b, __c))
^~
/usr/include/c++/6/bits/stl_algo.h:83:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:83:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:84:6: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::iter_swap(__result, __b);
^~~
/usr/include/c++/6/bits/stl_algo.h:85:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
else if (__comp(__a, __c))
^~
/usr/include/c++/6/bits/stl_algo.h:85:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:85:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:86:6: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::iter_swap(__result, __c);
^~~
/usr/include/c++/6/bits/stl_algo.h:88:6: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::iter_swap(__result, __a);
^~~
/usr/include/c++/6/bits/stl_algo.h:90:12: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
else if (__comp(__a, __c))
^~
/usr/include/c++/6/bits/stl_algo.h:90:12: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:90:12: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:91:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::iter_swap(__result, __a);
^~~
/usr/include/c++/6/bits/stl_algo.h:92:12: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
else if (__comp(__b, __c))
^~
/usr/include/c++/6/bits/stl_algo.h:92:12: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:92:12: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:93:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::iter_swap(__result, __c);
^~~
/usr/include/c++/6/bits/stl_algo.h:95:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::iter_swap(__result, __b);
^~~
/usr/include/c++/6/bits/stl_algo.h: In function '_RandomAccessIterator std::__unguarded_partition(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1893:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__unguarded_partition(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1893:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1893:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1899:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
while (__comp(__first, __pivot))
^~~~~
/usr/include/c++/6/bits/stl_algo.h:1899:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1899:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1902:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
while (__comp(__pivot, __last))
^~~~~
/usr/include/c++/6/bits/stl_algo.h:1902:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1902:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1906:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::iter_swap(__first, __last);
^~~
In file included from /usr/include/c++/6/bits/stl_algobase.h:71:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/predefined_ops.h: In member function 'bool __gnu_cxx::__ops::_Iter_less_iter::operator()(_Iterator1, _Iterator2) const [with _Iterator1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Iterator2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/predefined_ops.h:42:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
operator()(_Iterator1 __it1, _Iterator2 __it2) const
^~~~~~~~
/usr/include/c++/6/bits/predefined_ops.h:42:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_BI2 std::move_backward(_BI1, _BI1, _BI2) [with _BI1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _BI2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_algobase.h:658:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
move_backward(_BI1 __first, _BI1 __last, _BI2 __result)
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:658:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:658:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:670:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__result);
^
/usr/include/c++/6/bits/stl_algobase.h:670:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:670:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Val_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1818:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__unguarded_linear_insert(_RandomAccessIterator __last,
^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algo.h:61:0,
from /usr/include/c++/6/algorithm:62,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_heap.h: In function 'void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_heap.h:319:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~~~~~~
/usr/include/c++/6/bits/stl_heap.h:319:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_heap.h: In function 'void std::__pop_heap(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_heap.h:237:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__pop_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~~~~~
/usr/include/c++/6/bits/stl_heap.h:237:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_heap.h:237:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function 'void std::iter_swap(_ForwardIterator1, _ForwardIterator2) [with _ForwardIterator1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _ForwardIterator2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_algobase.h:120:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
iter_swap(_ForwardIterator1 __a, _ForwardIterator2 __b)
^~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:120:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_BI2 std::__copy_move_backward_a2(_BI1, _BI1, _BI2) [with bool _IsMove = true; _BI1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _BI2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_algobase.h:595:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__copy_move_backward_a2(_BI1 __first, _BI1 __last, _BI2 __result)
^~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:595:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:595:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:71:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/predefined_ops.h: In member function 'bool __gnu_cxx::__ops::_Val_less_iter::operator()(_Value&, _Iterator) const [with _Value = double; _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/predefined_ops.h:71:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
operator()(_Value& __val, _Iterator __it) const
^~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algo.h:61:0,
from /usr/include/c++/6/algorithm:62,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_heap.h:209:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_heap.h:217:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
if (__comp(__first + __secondChild,
^~
/usr/include/c++/6/bits/stl_heap.h:217:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_heap.h:217:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/stl_algo.h:61:0,
from /usr/include/c++/6/algorithm:62,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_val]':
/usr/include/c++/6/bits/stl_heap.h:124:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__push_heap(_RandomAccessIterator __first,
^~~~~~~~~~~
/usr/include/c++/6/bits/stl_heap.h:129:48: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
while (__holeIndex > __topIndex && __comp(__first + __parent, __value))
~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/stl_algobase.h:71:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/predefined_ops.h: In member function 'bool __gnu_cxx::__ops::_Iter_less_val::operator()(_Iterator, _Value&) const [with _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Value = double]':
/usr/include/c++/6/bits/predefined_ops.h:55:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
operator()(_Iterator __it, _Value& __val) const
^~~~~~~~
[ 19%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/IoSubstitutionModelFactory.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/IoSubstitutionModelFactory.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoSubstitutionModelFactory.cpp
[ 19%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp
In file included from /usr/include/c++/6/vector:69:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoPairedSiteLikelihoods.cpp:41:
/usr/include/c++/6/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::reserve(std::vector<_Tp, _Alloc>::size_type) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:75:70: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(this->_M_impl._M_finish));
^
/usr/include/c++/6/bits/vector.tcc:75:70: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:64:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoPairedSiteLikelihoods.cpp:41:
/usr/include/c++/6/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = std::move_iterator<double*>; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1225:8: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoPairedSiteLikelihoods.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoPairedSiteLikelihoods.cpp:41:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/vector:60,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoPairedSiteLikelihoods.cpp:41:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 19%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/IoTreeFactory.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/IoTreeFactory.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoTreeFactory.cpp
In file included from /usr/include/c++/6/map:61:0,
from /usr/include/Bpp/Utils/MapTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.cpp:40:
/usr/include/c++/6/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = const bpp::Node*; _Tp = double; _Compare = std::less<const bpp::Node*>; _Alloc = std::allocator<std::pair<const bpp::Node* const, double> >]':
/usr/include/c++/6/bits/stl_map.h:502:4: note: parameter passing for argument of type 'std::_Rb_tree<const bpp::Node*, std::pair<const bpp::Node* const, double>, std::_Select1st<std::pair<const bpp::Node* const, double> >, std::less<const bpp::Node*>, std::allocator<std::pair<const bpp::Node* const, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const bpp::Node* const, double> >}' will change in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
In file included from /usr/include/c++/6/map:60:0,
from /usr/include/Bpp/Utils/MapTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.cpp:40:
/usr/include/c++/6/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const bpp::Node*&&>, std::tuple<>}; _Key = const bpp::Node*; _Val = std::pair<const bpp::Node* const, double>; _KeyOfValue = std::_Select1st<std::pair<const bpp::Node* const, double> >; _Compare = std::less<const bpp::Node*>; _Alloc = std::allocator<std::pair<const bpp::Node* const, double> >]':
/usr/include/c++/6/bits/stl_tree.h:2193:7: note: parameter passing for argument of type 'std::_Rb_tree<const bpp::Node*, std::pair<const bpp::Node* const, double>, std::_Select1st<std::pair<const bpp::Node* const, double> >, std::less<const bpp::Node*>, std::allocator<std::pair<const bpp::Node* const, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const bpp::Node* const, double> >}' will change in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
In file included from /usr/include/c++/6/map:60:0,
from /usr/include/Bpp/Utils/MapTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.cpp:40:
/usr/include/c++/6/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = const bpp::Node*; _Val = std::pair<const bpp::Node* const, double>; _KeyOfValue = std::_Select1st<std::pair<const bpp::Node* const, double> >; _Compare = std::less<const bpp::Node*>; _Alloc = std::allocator<std::pair<const bpp::Node* const, double> >]':
/usr/include/c++/6/bits/stl_tree.h:1928:5: note: parameter passing for argument of type 'std::_Rb_tree<const bpp::Node*, std::pair<const bpp::Node* const, double>, std::_Select1st<std::pair<const bpp::Node* const, double> >, std::less<const bpp::Node*>, std::allocator<std::pair<const bpp::Node* const, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const bpp::Node* const, double> >}' will change in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 19%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp
[ 20%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/Newick.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/Newick.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/Newick.cpp
[ 21%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Sequence.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../AncestralStateReconstruction.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Sequence.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../AncestralStateReconstruction.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp:40:
/usr/include/c++/6/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__x.end());
^
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Sequence.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../AncestralStateReconstruction.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Sequence.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../AncestralStateReconstruction.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1225:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
^~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Sequence.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../AncestralStateReconstruction.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Sequence.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../AncestralStateReconstruction.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:151:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(__first, __last);
^~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Sequence.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../AncestralStateReconstruction.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Sequence.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../AncestralStateReconstruction.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Sequence.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../AncestralStateReconstruction.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Sequence.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../AncestralStateReconstruction.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:126:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Sequence.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../AncestralStateReconstruction.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Sequence.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../AncestralStateReconstruction.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Sequence.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../AncestralStateReconstruction.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Sequence.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../AncestralStateReconstruction.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Sequence.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../AncestralStateReconstruction.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Sequence.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../AncestralStateReconstruction.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Sequence.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../AncestralStateReconstruction.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Sequence.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../AncestralStateReconstruction.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 21%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/NexusIoTree.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/NexusIoTree.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/NexusIoTree.cpp
[ 21%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/Nhx.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/Nhx.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/Nhx.cpp
/<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp: In member function 'void bpp::BranchLikelihood::computeLogLikelihood()':
/<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:115:29: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
sort(la.begin(), la.end());
^
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_algo.h:4697:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
sort(_RandomAccessIterator __first, _RandomAccessIterator __last)
^~~~
/usr/include/c++/6/bits/stl_algo.h:4697:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:4707:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__sort(__first, __last, __gnu_cxx::__ops::__iter_less_iter());
^~~
In file included from /usr/include/c++/6/map:61:0,
from /usr/include/Bpp/Utils/MapTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_map.h:483:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1960:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__sort(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~
/usr/include/c++/6/bits/stl_algo.h:1960:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1965:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__introsort_loop(__first, __last,
^~~
/usr/include/c++/6/bits/stl_algo.h:1968:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__final_insertion_sort(__first, __last, __comp);
^~~
/<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp: In member function 'std::pair<std::vector<std::__cxx11::basic_string<char> >, std::vector<double> > bpp::PairedSiteLikelihoods::computeExpectedLikelihoodWeights(int) const':
/<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp:149:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
double Ymax = *max_element(models_logliks.begin(), models_logliks.end());
~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp:159:88: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
double sumELLD = accumulate(exp_logliks_diffs.begin(), exp_logliks_diffs.end(), 0.0);
^
In file included from /usr/include/c++/6/map:60:0,
from /usr/include/Bpp/Utils/MapTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const int&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_tree.h:2193:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:64:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp:41:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:69:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp:41:
/usr/include/c++/6/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__x.end());
^
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.h:48,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp:46:
/usr/include/c++/6/bits/stl_algo.h: In function '_FIter std::max_element(_FIter, _FIter) [with _FIter = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_algo.h:5539:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
max_element(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:5539:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:5549:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__gnu_cxx::__ops::__iter_less_iter());
^
In file included from /usr/include/c++/6/numeric:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp:43:
/usr/include/c++/6/bits/stl_numeric.h: In function '_Tp std::accumulate(_InputIterator, _InputIterator, _Tp) [with _InputIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Tp = double]':
/usr/include/c++/6/bits/stl_numeric.h:120:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
accumulate(_InputIterator __first, _InputIterator __last, _Tp __init)
^~~~~~~~~~
/usr/include/c++/6/bits/stl_numeric.h:120:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:64:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp:41:
/usr/include/c++/6/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1225:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
^~~
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp:41:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1945:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__partial_sort(__first, __last, __last, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:1945:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1945:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp:41:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Tp = double]':
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1950:62: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__unguarded_partition_pivot(__first, __last, __comp);
^
/usr/include/c++/6/bits/stl_algo.h:1951:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
^~~
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:151:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
_Destroy(__first, __last);
^~~~~~~~
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1877:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__final_insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1877:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1882:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:1883:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__unguarded_insertion_sort(__first + int(_S_threshold), __last,
^~~
/usr/include/c++/6/bits/stl_algo.h:1887:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
^~~
In file included from /usr/include/c++/6/map:60:0,
from /usr/include/Bpp/Utils/MapTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_tree.h:1928:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.h:48,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp:46:
/usr/include/c++/6/bits/stl_algo.h: In function '_ForwardIterator std::__max_element(_ForwardIterator, _ForwardIterator, _Compare) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:5518:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__max_element(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:5518:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:5524:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
if (__comp(__result, __first))
^~
/usr/include/c++/6/bits/stl_algo.h:5524:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:5524:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/vector:60,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp:41:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp:41:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double>]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp:41:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:126:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
^~~
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__partial_sort(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1925:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__partial_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1925:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1925:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1930:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__heap_select(__first, __middle, __last, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:1930:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1930:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1931:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__sort_heap(__first, __middle, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h: In function '_RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1914:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__unguarded_partition_pivot(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1914:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1918:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__move_median_to_first(__first, __first + 1, __mid, __last - 1,
^~~
/usr/include/c++/6/bits/stl_algo.h:1918:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1918:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1918:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1920:77: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
return std::__unguarded_partition(__first + 1, __last, __first, __comp);
^
/usr/include/c++/6/bits/stl_algo.h:1920:77: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1920:77: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1844:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
if (__comp(__i, __first))
^~
/usr/include/c++/6/bits/stl_algo.h:1844:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1844:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algo.h:1848:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
_GLIBCXX_MOVE_BACKWARD3(__first, __i, __i + 1);
^
/usr/include/c++/6/bits/stl_algo.h:1848:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1848:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__unguarded_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1860:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__unguarded_insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1860:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:71:0,
from /usr/include/c++/6/vector:60,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp:41:
/usr/include/c++/6/bits/predefined_ops.h: In member function 'bool __gnu_cxx::__ops::_Iter_less_iter::operator()(_Iterator1, _Iterator2) const [with _Iterator1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Iterator2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/predefined_ops.h:42:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
operator()(_Iterator1 __it1, _Iterator2 __it2) const
^~~~~~~~
/usr/include/c++/6/bits/predefined_ops.h:42:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/vector:60,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp:41:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double>]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp:41:
/usr/include/c++/6/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1665:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__heap_select(_RandomAccessIterator __first,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1665:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1665:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1669:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__make_heap(__first, __middle, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:1671:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
if (__comp(__i, __first))
^~
/usr/include/c++/6/bits/stl_algo.h:1671:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1671:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1672:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__pop_heap(__first, __middle, __i, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:1672:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1672:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algo.h:61:0,
from /usr/include/c++/6/algorithm:62,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_heap.h: In function 'void std::__sort_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_heap.h:394:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__sort_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~~~~~~
/usr/include/c++/6/bits/stl_heap.h:394:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_heap.h:400:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__pop_heap(__first, __last, __last, __comp);
^~~
/usr/include/c++/6/bits/stl_heap.h:400:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_heap.h:400:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp:41:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:81:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
if (__comp(__a, __b))
^~
/usr/include/c++/6/bits/stl_algo.h:81:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:81:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:83:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
if (__comp(__b, __c))
^~
/usr/include/c++/6/bits/stl_algo.h:83:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:83:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:84:6: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::iter_swap(__result, __b);
^~~
/usr/include/c++/6/bits/stl_algo.h:85:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
else if (__comp(__a, __c))
^~
/usr/include/c++/6/bits/stl_algo.h:85:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:85:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:86:6: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::iter_swap(__result, __c);
^~~
/usr/include/c++/6/bits/stl_algo.h:88:6: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::iter_swap(__result, __a);
^~~
/usr/include/c++/6/bits/stl_algo.h:90:12: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
else if (__comp(__a, __c))
^~
/usr/include/c++/6/bits/stl_algo.h:90:12: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:90:12: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:91:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::iter_swap(__result, __a);
^~~
/usr/include/c++/6/bits/stl_algo.h:92:12: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
else if (__comp(__b, __c))
^~
/usr/include/c++/6/bits/stl_algo.h:92:12: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:92:12: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:93:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::iter_swap(__result, __c);
^~~
/usr/include/c++/6/bits/stl_algo.h:95:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::iter_swap(__result, __b);
^~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algo.h: In function '_RandomAccessIterator std::__unguarded_partition(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1893:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__unguarded_partition(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1893:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1893:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1899:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
while (__comp(__first, __pivot))
^~~~~
/usr/include/c++/6/bits/stl_algo.h:1899:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1899:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1902:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
while (__comp(__pivot, __last))
^~~~~
/usr/include/c++/6/bits/stl_algo.h:1902:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1902:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1906:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::iter_swap(__first, __last);
^~~
In file included from /usr/include/c++/6/bits/stl_algobase.h:71:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/predefined_ops.h: In member function 'bool __gnu_cxx::__ops::_Iter_less_iter::operator()(_Iterator1, _Iterator2) const [with _Iterator1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Iterator2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/predefined_ops.h:42:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
operator()(_Iterator1 __it1, _Iterator2 __it2) const
^~~~~~~~
/usr/include/c++/6/bits/predefined_ops.h:42:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_BI2 std::move_backward(_BI1, _BI1, _BI2) [with _BI1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _BI2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_algobase.h:658:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
move_backward(_BI1 __first, _BI1 __last, _BI2 __result)
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:658:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:658:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:670:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__result);
^
/usr/include/c++/6/bits/stl_algobase.h:670:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:670:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Val_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1818:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__unguarded_linear_insert(_RandomAccessIterator __last,
^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algo.h:61:0,
from /usr/include/c++/6/algorithm:62,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_heap.h: In function 'void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_heap.h:319:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~~~~~~
/usr/include/c++/6/bits/stl_heap.h:319:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_heap.h: In function 'void std::__pop_heap(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_heap.h:237:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__pop_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~~~~~
/usr/include/c++/6/bits/stl_heap.h:237:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_heap.h:237:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function 'void std::iter_swap(_ForwardIterator1, _ForwardIterator2) [with _ForwardIterator1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _ForwardIterator2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_algobase.h:120:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
iter_swap(_ForwardIterator1 __a, _ForwardIterator2 __b)
^~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:120:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_BI2 std::__copy_move_backward_a2(_BI1, _BI1, _BI2) [with bool _IsMove = true; _BI1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _BI2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_algobase.h:595:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__copy_move_backward_a2(_BI1 __first, _BI1 __last, _BI2 __result)
^~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:595:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:595:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:71:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/predefined_ops.h: In member function 'bool __gnu_cxx::__ops::_Val_less_iter::operator()(_Value&, _Iterator) const [with _Value = double; _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/predefined_ops.h:71:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
operator()(_Value& __val, _Iterator __it) const
^~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algo.h:61:0,
from /usr/include/c++/6/algorithm:62,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_heap.h:209:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_heap.h:217:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
if (__comp(__first + __secondChild,
^~
/usr/include/c++/6/bits/stl_heap.h:217:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_heap.h:217:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/stl_algo.h:61:0,
from /usr/include/c++/6/algorithm:62,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_val]':
/usr/include/c++/6/bits/stl_heap.h:124:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__push_heap(_RandomAccessIterator __first,
^~~~~~~~~~~
/usr/include/c++/6/bits/stl_heap.h:129:48: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
while (__holeIndex > __topIndex && __comp(__first + __parent, __value))
~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/stl_algobase.h:71:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/predefined_ops.h: In member function 'bool __gnu_cxx::__ops::_Iter_less_val::operator()(_Iterator, _Value&) const [with _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Value = double]':
/usr/include/c++/6/bits/predefined_ops.h:55:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
operator()(_Iterator __it, _Value& __val) const
^~~~~~~~
[ 21%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/PseudoNewtonOptimizer.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/PseudoNewtonOptimizer.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PseudoNewtonOptimizer.cpp
[ 21%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/RASTools.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/RASTools.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RASTools.cpp
[ 22%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.cpp
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoTree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/Nhx.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/Nhx.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoTree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/Nhx.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/Nhx.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoTree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/Nhx.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/Nhx.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 22%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.cpp
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Io/IoFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoDistanceMatrix.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Io/IoFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoDistanceMatrix.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Io/IoFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoDistanceMatrix.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Io/IoFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoDistanceMatrix.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Io/IoFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoDistanceMatrix.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Io/IoFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoDistanceMatrix.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Io/IoFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoDistanceMatrix.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Io/IoFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoDistanceMatrix.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Io/IoFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoDistanceMatrix.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Io/IoFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoDistanceMatrix.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Io/IoFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/IoDistanceMatrix.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
[ 22%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp
[ 22%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.cpp
[ 23%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 23%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:69:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__x.end());
^
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
^~~
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.cpp:41:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/map:61:0,
from /usr/include/Bpp/Utils/MapTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.cpp:41:
/usr/include/c++/6/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = const bpp::Node*; _Tp = double; _Compare = std::less<const bpp::Node*>; _Alloc = std::allocator<std::pair<const bpp::Node* const, double> >]':
/usr/include/c++/6/bits/stl_map.h:502:4: note: parameter passing for argument of type 'std::_Rb_tree<const bpp::Node*, std::pair<const bpp::Node* const, double>, std::_Select1st<std::pair<const bpp::Node* const, double> >, std::less<const bpp::Node*>, std::allocator<std::pair<const bpp::Node* const, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const bpp::Node* const, double> >}' will change in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/map:60:0,
from /usr/include/Bpp/Utils/MapTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.cpp:41:
/usr/include/c++/6/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const bpp::Node*&&>, std::tuple<>}; _Key = const bpp::Node*; _Val = std::pair<const bpp::Node* const, double>; _KeyOfValue = std::_Select1st<std::pair<const bpp::Node* const, double> >; _Compare = std::less<const bpp::Node*>; _Alloc = std::allocator<std::pair<const bpp::Node* const, double> >]':
/usr/include/c++/6/bits/stl_tree.h:2193:7: note: parameter passing for argument of type 'std::_Rb_tree<const bpp::Node*, std::pair<const bpp::Node* const, double>, std::_Select1st<std::pair<const bpp::Node* const, double> >, std::less<const bpp::Node*>, std::allocator<std::pair<const bpp::Node* const, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const bpp::Node* const, double> >}' will change in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1225:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
^~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Tp = double]':
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:151:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
_Destroy(__first, __last);
^~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.cpp:41:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/map:60:0,
from /usr/include/Bpp/Utils/MapTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.cpp:41:
/usr/include/c++/6/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = const bpp::Node*; _Val = std::pair<const bpp::Node* const, double>; _KeyOfValue = std::_Select1st<std::pair<const bpp::Node* const, double> >; _Compare = std::less<const bpp::Node*>; _Alloc = std::allocator<std::pair<const bpp::Node* const, double> >]':
/usr/include/c++/6/bits/stl_tree.h:1928:5: note: parameter passing for argument of type 'std::_Rb_tree<const bpp::Node*, std::pair<const bpp::Node* const, double>, std::_Select1st<std::pair<const bpp::Node* const, double> >, std::less<const bpp::Node*>, std::allocator<std::pair<const bpp::Node* const, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const bpp::Node* const, double> >}' will change in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.cpp:41:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.cpp:41:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:126:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
^~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double>]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__result));
^
[ 23%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:69:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__x.end());
^
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1225:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
^~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Tp = double]':
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:151:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
_Destroy(__first, __last);
^~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:126:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double>]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 24%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.cpp
[ 24%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:69:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__x.end());
^
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1225:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
^~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Tp = double]':
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:151:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
_Destroy(__first, __last);
^~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:126:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
^~~
/<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp: In member function 'virtual double bpp::RHomogeneousTreeLikelihood::getLogLikelihood() const':
/<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:172:29: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
sort(la.begin(), la.end());
^
[ 24%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double>]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:69:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__x.end());
^
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
^~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp:41:0:
/<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h: In member function 'void bpp::DRASDRTreeLikelihoodNodeData::eraseNeighborArrays()':
/<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:211:82: note: parameter passing for argument of type 'std::vector<double>::const_iterator {aka __gnu_cxx::__normal_iterator<const double*, std::vector<double> >}' will change in GCC 7.1
nodeDLikelihoods_.erase(nodeDLikelihoods_.begin(), nodeDLikelihoods_.end());
^
/<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:211:82: note: parameter passing for argument of type 'std::vector<double>::const_iterator {aka __gnu_cxx::__normal_iterator<const double*, std::vector<double> >}' will change in GCC 7.1
/<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:211:82: note: parameter passing for argument of type 'std::vector<double>::const_iterator {aka __gnu_cxx::__normal_iterator<const double*, std::vector<double> >}' will change in GCC 7.1
/<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:212:85: note: parameter passing for argument of type 'std::vector<double>::const_iterator {aka __gnu_cxx::__normal_iterator<const double*, std::vector<double> >}' will change in GCC 7.1
nodeD2Likelihoods_.erase(nodeD2Likelihoods_.begin(), nodeD2Likelihoods_.end());
^
/<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:212:85: note: parameter passing for argument of type 'std::vector<double>::const_iterator {aka __gnu_cxx::__normal_iterator<const double*, std::vector<double> >}' will change in GCC 7.1
/<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:212:85: note: parameter passing for argument of type 'std::vector<double>::const_iterator {aka __gnu_cxx::__normal_iterator<const double*, std::vector<double> >}' will change in GCC 7.1
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_algo.h:4697:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
sort(_RandomAccessIterator __first, _RandomAccessIterator __last)
^~~~
/usr/include/c++/6/bits/stl_algo.h:4697:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:4707:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__sort(__first, __last, __gnu_cxx::__ops::__iter_less_iter());
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1225:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
^~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Tp = double]':
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:151:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
_Destroy(__first, __last);
^~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp:41:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1960:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__sort(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~
/usr/include/c++/6/bits/stl_algo.h:1960:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1965:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__introsort_loop(__first, __last,
^~~
/usr/include/c++/6/bits/stl_algo.h:1968:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__final_insertion_sort(__first, __last, __comp);
^~~
/usr/include/c++/6/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(std::vector<_Tp, _Alloc>::const_iterator, std::vector<_Tp, _Alloc>::const_iterator) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:1174:7: note: parameter passing for argument of type 'std::vector<double>::const_iterator {aka __gnu_cxx::__normal_iterator<const double*, std::vector<double> >}' will change in GCC 7.1
erase(const_iterator __first, const_iterator __last)
^~~~~
/usr/include/c++/6/bits/stl_vector.h:1174:7: note: parameter passing for argument of type 'std::vector<double>::const_iterator {aka __gnu_cxx::__normal_iterator<const double*, std::vector<double> >}' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1178:71: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
^
/usr/include/c++/6/bits/stl_vector.h:1178:71: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1178:71: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:126:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1945:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__partial_sort(__first, __last, __last, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:1945:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1945:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1950:62: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__unguarded_partition_pivot(__first, __last, __comp);
^
/usr/include/c++/6/bits/stl_algo.h:1951:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1877:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__final_insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1877:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1882:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:1883:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__unguarded_insertion_sort(__first + int(_S_threshold), __last,
^~~
/usr/include/c++/6/bits/stl_algo.h:1887:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:69:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp:41:
/usr/include/c++/6/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::iterator) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:153:5: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' will change in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:153:5: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp:41:
/usr/include/c++/6/bits/vector.tcc:159:6: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
_GLIBCXX_MOVE3(__last, end(), __first);
^
/usr/include/c++/6/bits/vector.tcc:159:6: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:159:6: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double>]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp:41:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__partial_sort(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1925:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__partial_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1925:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1925:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1930:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__heap_select(__first, __middle, __last, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:1930:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1930:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1931:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__sort_heap(__first, __middle, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h: In function '_RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1914:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__unguarded_partition_pivot(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1914:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1918:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__move_median_to_first(__first, __first + 1, __mid, __last - 1,
^~~
/usr/include/c++/6/bits/stl_algo.h:1918:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1918:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1918:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1920:77: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
return std::__unguarded_partition(__first + 1, __last, __first, __comp);
^
/usr/include/c++/6/bits/stl_algo.h:1920:77: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1920:77: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1844:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
if (__comp(__i, __first))
^~
/usr/include/c++/6/bits/stl_algo.h:1844:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1844:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algo.h:1848:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
_GLIBCXX_MOVE_BACKWARD3(__first, __i, __i + 1);
^
/usr/include/c++/6/bits/stl_algo.h:1848:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1848:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__unguarded_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1860:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__unguarded_insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1860:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp:41:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::move(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_algobase.h:479:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
move(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:479:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:479:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:488:47: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__miter_base(__last), __result);
^
/usr/include/c++/6/bits/stl_algobase.h:488:47: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:488:47: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1665:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__heap_select(_RandomAccessIterator __first,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1665:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1665:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1669:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__make_heap(__first, __middle, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:1671:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
if (__comp(__i, __first))
^~
/usr/include/c++/6/bits/stl_algo.h:1671:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1671:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1672:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__pop_heap(__first, __middle, __i, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:1672:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1672:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algo.h:61:0,
from /usr/include/c++/6/algorithm:62,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_heap.h: In function 'void std::__sort_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_heap.h:394:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__sort_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~~~~~~
/usr/include/c++/6/bits/stl_heap.h:394:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_heap.h:400:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__pop_heap(__first, __last, __last, __comp);
^~~
/usr/include/c++/6/bits/stl_heap.h:400:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_heap.h:400:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:81:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
if (__comp(__a, __b))
^~
/usr/include/c++/6/bits/stl_algo.h:81:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:81:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:83:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
if (__comp(__b, __c))
^~
/usr/include/c++/6/bits/stl_algo.h:83:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:83:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:84:6: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::iter_swap(__result, __b);
^~~
/usr/include/c++/6/bits/stl_algo.h:85:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
else if (__comp(__a, __c))
^~
/usr/include/c++/6/bits/stl_algo.h:85:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:85:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:86:6: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::iter_swap(__result, __c);
^~~
/usr/include/c++/6/bits/stl_algo.h:88:6: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::iter_swap(__result, __a);
^~~
/usr/include/c++/6/bits/stl_algo.h:90:12: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
else if (__comp(__a, __c))
^~
/usr/include/c++/6/bits/stl_algo.h:90:12: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:90:12: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:91:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::iter_swap(__result, __a);
^~~
/usr/include/c++/6/bits/stl_algo.h:92:12: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
else if (__comp(__b, __c))
^~
/usr/include/c++/6/bits/stl_algo.h:92:12: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:92:12: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:93:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::iter_swap(__result, __c);
^~~
/usr/include/c++/6/bits/stl_algo.h:95:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::iter_swap(__result, __b);
^~~
/usr/include/c++/6/bits/stl_algo.h: In function '_RandomAccessIterator std::__unguarded_partition(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1893:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__unguarded_partition(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1893:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1893:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1899:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
while (__comp(__first, __pivot))
^~~~~
/usr/include/c++/6/bits/stl_algo.h:1899:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1899:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1902:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
while (__comp(__pivot, __last))
^~~~~
/usr/include/c++/6/bits/stl_algo.h:1902:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1902:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1906:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::iter_swap(__first, __last);
^~~
In file included from /usr/include/c++/6/bits/stl_algobase.h:71:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/predefined_ops.h: In member function 'bool __gnu_cxx::__ops::_Iter_less_iter::operator()(_Iterator1, _Iterator2) const [with _Iterator1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Iterator2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/predefined_ops.h:42:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
operator()(_Iterator1 __it1, _Iterator2 __it2) const
^~~~~~~~
/usr/include/c++/6/bits/predefined_ops.h:42:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_BI2 std::move_backward(_BI1, _BI1, _BI2) [with _BI1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _BI2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_algobase.h:658:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
move_backward(_BI1 __first, _BI1 __last, _BI2 __result)
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:658:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:658:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:670:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__result);
^
/usr/include/c++/6/bits/stl_algobase.h:670:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:670:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Val_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1818:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__unguarded_linear_insert(_RandomAccessIterator __last,
^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp:41:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double>]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algo.h:61:0,
from /usr/include/c++/6/algorithm:62,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_heap.h: In function 'void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_heap.h:319:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~~~~~~
/usr/include/c++/6/bits/stl_heap.h:319:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_heap.h: In function 'void std::__pop_heap(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_heap.h:237:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__pop_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~~~~~
/usr/include/c++/6/bits/stl_heap.h:237:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_heap.h:237:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function 'void std::iter_swap(_ForwardIterator1, _ForwardIterator2) [with _ForwardIterator1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _ForwardIterator2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_algobase.h:120:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
iter_swap(_ForwardIterator1 __a, _ForwardIterator2 __b)
^~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:120:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_BI2 std::__copy_move_backward_a2(_BI1, _BI1, _BI2) [with bool _IsMove = true; _BI1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _BI2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_algobase.h:595:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__copy_move_backward_a2(_BI1 __first, _BI1 __last, _BI2 __result)
^~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:595:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:595:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:71:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/predefined_ops.h: In member function 'bool __gnu_cxx::__ops::_Val_less_iter::operator()(_Value&, _Iterator) const [with _Value = double; _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/predefined_ops.h:71:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
operator()(_Value& __val, _Iterator __it) const
^~~~~~~~
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp:41:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp:41:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = true; _II = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algo.h:61:0,
from /usr/include/c++/6/algorithm:62,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_heap.h:209:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_heap.h:217:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
if (__comp(__first + __secondChild,
^~
/usr/include/c++/6/bits/stl_heap.h:217:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_heap.h:217:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_val]':
/usr/include/c++/6/bits/stl_heap.h:124:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__push_heap(_RandomAccessIterator __first,
^~~~~~~~~~~
/usr/include/c++/6/bits/stl_heap.h:129:48: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
while (__holeIndex > __topIndex && __comp(__first + __parent, __value))
~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/stl_algobase.h:71:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/predefined_ops.h: In member function 'bool __gnu_cxx::__ops::_Iter_less_val::operator()(_Iterator, _Value&) const [with _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Value = double]':
/usr/include/c++/6/bits/predefined_ops.h:55:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
operator()(_Iterator __it, _Value& __val) const
^~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp:41:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp:41:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp:41:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 25%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp
[ 25%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp
[ 25%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:69:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp:40:
/usr/include/c++/6/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__x.end());
^
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1225:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
^~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Tp = double]':
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:151:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
_Destroy(__first, __last);
^~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:126:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double>]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
[ 26%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.cpp:41:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.cpp:41:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.cpp:41:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.cpp:41:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.cpp:41:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.cpp:41:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp: In member function 'virtual double bpp::RNonHomogeneousTreeLikelihood::getLogLikelihood() const':
/<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:178:29: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
sort(la.begin(), la.end());
^
[ 26%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/DecompositionReward.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/DecompositionReward.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.cpp
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_algo.h:4697:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
sort(_RandomAccessIterator __first, _RandomAccessIterator __last)
^~~~
/usr/include/c++/6/bits/stl_algo.h:4697:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:4707:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__sort(__first, __last, __gnu_cxx::__ops::__iter_less_iter());
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1960:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__sort(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~
/usr/include/c++/6/bits/stl_algo.h:1960:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1965:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__introsort_loop(__first, __last,
^~~
/usr/include/c++/6/bits/stl_algo.h:1968:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__final_insertion_sort(__first, __last, __comp);
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1945:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__partial_sort(__first, __last, __last, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:1945:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1945:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1950:62: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__unguarded_partition_pivot(__first, __last, __comp);
^
/usr/include/c++/6/bits/stl_algo.h:1951:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1877:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__final_insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1877:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1882:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:1883:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__unguarded_insertion_sort(__first + int(_S_threshold), __last,
^~~
/usr/include/c++/6/bits/stl_algo.h:1887:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double>]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__partial_sort(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1925:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__partial_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1925:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1925:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1930:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__heap_select(__first, __middle, __last, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:1930:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1930:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1931:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__sort_heap(__first, __middle, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h: In function '_RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1914:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__unguarded_partition_pivot(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1914:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1918:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__move_median_to_first(__first, __first + 1, __mid, __last - 1,
^~~
/usr/include/c++/6/bits/stl_algo.h:1918:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1918:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1918:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1920:77: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
return std::__unguarded_partition(__first + 1, __last, __first, __comp);
^
/usr/include/c++/6/bits/stl_algo.h:1920:77: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1920:77: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1844:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
if (__comp(__i, __first))
^~
/usr/include/c++/6/bits/stl_algo.h:1844:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1844:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/6/bits/stl_algo.h:1848:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
_GLIBCXX_MOVE_BACKWARD3(__first, __i, __i + 1);
^
/usr/include/c++/6/bits/stl_algo.h:1848:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1848:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__unguarded_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1860:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__unguarded_insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1860:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1665:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__heap_select(_RandomAccessIterator __first,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1665:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1665:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1669:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__make_heap(__first, __middle, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:1671:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
if (__comp(__i, __first))
^~
/usr/include/c++/6/bits/stl_algo.h:1671:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1671:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1672:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__pop_heap(__first, __middle, __i, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:1672:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1672:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algo.h:61:0,
from /usr/include/c++/6/algorithm:62,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/6/bits/stl_heap.h: In function 'void std::__sort_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_heap.h:394:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__sort_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~~~~~~
/usr/include/c++/6/bits/stl_heap.h:394:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_heap.h:400:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__pop_heap(__first, __last, __last, __comp);
^~~
/usr/include/c++/6/bits/stl_heap.h:400:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_heap.h:400:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:81:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
if (__comp(__a, __b))
^~
/usr/include/c++/6/bits/stl_algo.h:81:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:81:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:83:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
if (__comp(__b, __c))
^~
/usr/include/c++/6/bits/stl_algo.h:83:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:83:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:84:6: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::iter_swap(__result, __b);
^~~
/usr/include/c++/6/bits/stl_algo.h:85:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
else if (__comp(__a, __c))
^~
/usr/include/c++/6/bits/stl_algo.h:85:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:85:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:86:6: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::iter_swap(__result, __c);
^~~
/usr/include/c++/6/bits/stl_algo.h:88:6: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::iter_swap(__result, __a);
^~~
/usr/include/c++/6/bits/stl_algo.h:90:12: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
else if (__comp(__a, __c))
^~
/usr/include/c++/6/bits/stl_algo.h:90:12: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:90:12: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:91:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::iter_swap(__result, __a);
^~~
/usr/include/c++/6/bits/stl_algo.h:92:12: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
else if (__comp(__b, __c))
^~
/usr/include/c++/6/bits/stl_algo.h:92:12: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:92:12: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:93:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::iter_swap(__result, __c);
^~~
/usr/include/c++/6/bits/stl_algo.h:95:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::iter_swap(__result, __b);
^~~
/usr/include/c++/6/bits/stl_algo.h: In function '_RandomAccessIterator std::__unguarded_partition(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1893:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__unguarded_partition(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1893:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1893:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1899:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
while (__comp(__first, __pivot))
^~~~~
/usr/include/c++/6/bits/stl_algo.h:1899:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1899:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1902:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
while (__comp(__pivot, __last))
^~~~~
/usr/include/c++/6/bits/stl_algo.h:1902:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1902:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1906:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::iter_swap(__first, __last);
^~~
In file included from /usr/include/c++/6/bits/stl_algobase.h:71:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/6/bits/predefined_ops.h: In member function 'bool __gnu_cxx::__ops::_Iter_less_iter::operator()(_Iterator1, _Iterator2) const [with _Iterator1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Iterator2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/predefined_ops.h:42:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
operator()(_Iterator1 __it1, _Iterator2 __it2) const
^~~~~~~~
/usr/include/c++/6/bits/predefined_ops.h:42:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/6/bits/stl_algobase.h: In function '_BI2 std::move_backward(_BI1, _BI1, _BI2) [with _BI1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _BI2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_algobase.h:658:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
move_backward(_BI1 __first, _BI1 __last, _BI2 __result)
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:658:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:658:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:670:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__result);
^
/usr/include/c++/6/bits/stl_algobase.h:670:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:670:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Val_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1818:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__unguarded_linear_insert(_RandomAccessIterator __last,
^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algo.h:61:0,
from /usr/include/c++/6/algorithm:62,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/6/bits/stl_heap.h: In function 'void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_heap.h:319:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~~~~~~
/usr/include/c++/6/bits/stl_heap.h:319:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_heap.h: In function 'void std::__pop_heap(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_heap.h:237:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__pop_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~~~~~
/usr/include/c++/6/bits/stl_heap.h:237:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_heap.h:237:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/6/bits/stl_algobase.h: In function 'void std::iter_swap(_ForwardIterator1, _ForwardIterator2) [with _ForwardIterator1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _ForwardIterator2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_algobase.h:120:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
iter_swap(_ForwardIterator1 __a, _ForwardIterator2 __b)
^~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:120:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/6/bits/stl_algobase.h: In function '_BI2 std::__copy_move_backward_a2(_BI1, _BI1, _BI2) [with bool _IsMove = true; _BI1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _BI2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_algobase.h:595:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__copy_move_backward_a2(_BI1 __first, _BI1 __last, _BI2 __result)
^~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:595:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:595:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:71:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/6/bits/predefined_ops.h: In member function 'bool __gnu_cxx::__ops::_Val_less_iter::operator()(_Value&, _Iterator) const [with _Value = double; _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/predefined_ops.h:71:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
operator()(_Value& __val, _Iterator __it) const
^~~~~~~~
In file included from /usr/include/c++/6/bits/stl_algo.h:61:0,
from /usr/include/c++/6/algorithm:62,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/6/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_heap.h:209:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_heap.h:217:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
if (__comp(__first + __secondChild,
^~
/usr/include/c++/6/bits/stl_heap.h:217:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_heap.h:217:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_val]':
/usr/include/c++/6/bits/stl_heap.h:124:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__push_heap(_RandomAccessIterator __first,
^~~~~~~~~~~
/usr/include/c++/6/bits/stl_heap.h:129:48: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
while (__holeIndex > __topIndex && __comp(__first + __parent, __value))
~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/stl_algobase.h:71:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/6/bits/predefined_ops.h: In member function 'bool __gnu_cxx::__ops::_Iter_less_val::operator()(_Iterator, _Value&) const [with _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Value = double]':
/usr/include/c++/6/bits/predefined_ops.h:55:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
operator()(_Iterator __it, _Value& __val) const
^~~~~~~~
[ 26%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp
[ 26%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Reward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Reward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.cpp:40:
/usr/include/c++/6/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__x.end());
^
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Reward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Reward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1225:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
^~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Reward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Reward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:151:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(__first, __last);
^~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Reward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Reward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Reward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Reward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:126:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Reward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Reward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Reward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Reward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Reward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Reward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Reward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Reward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 26%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp
/<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp: In member function 'virtual double bpp::DRHomogeneousMixedTreeLikelihood::getLogLikelihood() const':
/<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:262:29: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
sort(la.begin(), la.end());
^
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:69:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__x.end());
^
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
^~~
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_algo.h:4697:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
sort(_RandomAccessIterator __first, _RandomAccessIterator __last)
^~~~
/usr/include/c++/6/bits/stl_algo.h:4697:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:4707:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__sort(__first, __last, __gnu_cxx::__ops::__iter_less_iter());
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1225:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
^~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Tp = double]':
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:151:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
_Destroy(__first, __last);
^~~~~~~~
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1960:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__sort(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~
/usr/include/c++/6/bits/stl_algo.h:1960:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1965:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__introsort_loop(__first, __last,
^~~
/usr/include/c++/6/bits/stl_algo.h:1968:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__final_insertion_sort(__first, __last, __comp);
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:126:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
^~~
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1945:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__partial_sort(__first, __last, __last, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:1945:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1945:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1950:62: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__unguarded_partition_pivot(__first, __last, __comp);
^
/usr/include/c++/6/bits/stl_algo.h:1951:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1877:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__final_insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1877:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1882:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:1883:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__unguarded_insertion_sort(__first + int(_S_threshold), __last,
^~~
/usr/include/c++/6/bits/stl_algo.h:1887:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double>]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__partial_sort(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1925:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__partial_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1925:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1925:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1930:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__heap_select(__first, __middle, __last, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:1930:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1930:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1931:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__sort_heap(__first, __middle, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h: In function '_RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1914:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__unguarded_partition_pivot(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1914:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1918:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__move_median_to_first(__first, __first + 1, __mid, __last - 1,
^~~
/usr/include/c++/6/bits/stl_algo.h:1918:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1918:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1918:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1920:77: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
return std::__unguarded_partition(__first + 1, __last, __first, __comp);
^
/usr/include/c++/6/bits/stl_algo.h:1920:77: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1920:77: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1844:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
if (__comp(__i, __first))
^~
/usr/include/c++/6/bits/stl_algo.h:1844:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1844:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_algo.h:1848:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
_GLIBCXX_MOVE_BACKWARD3(__first, __i, __i + 1);
^
/usr/include/c++/6/bits/stl_algo.h:1848:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1848:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__unguarded_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1860:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__unguarded_insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1860:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1665:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__heap_select(_RandomAccessIterator __first,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1665:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1665:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1669:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__make_heap(__first, __middle, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:1671:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
if (__comp(__i, __first))
^~
/usr/include/c++/6/bits/stl_algo.h:1671:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1671:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1672:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__pop_heap(__first, __middle, __i, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:1672:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1672:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algo.h:61:0,
from /usr/include/c++/6/algorithm:62,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_heap.h: In function 'void std::__sort_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_heap.h:394:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__sort_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~~~~~~
/usr/include/c++/6/bits/stl_heap.h:394:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_heap.h:400:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__pop_heap(__first, __last, __last, __comp);
^~~
/usr/include/c++/6/bits/stl_heap.h:400:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_heap.h:400:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:81:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
if (__comp(__a, __b))
^~
/usr/include/c++/6/bits/stl_algo.h:81:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:81:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:83:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
if (__comp(__b, __c))
^~
/usr/include/c++/6/bits/stl_algo.h:83:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:83:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:84:6: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::iter_swap(__result, __b);
^~~
/usr/include/c++/6/bits/stl_algo.h:85:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
else if (__comp(__a, __c))
^~
/usr/include/c++/6/bits/stl_algo.h:85:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:85:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:86:6: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::iter_swap(__result, __c);
^~~
/usr/include/c++/6/bits/stl_algo.h:88:6: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::iter_swap(__result, __a);
^~~
/usr/include/c++/6/bits/stl_algo.h:90:12: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
else if (__comp(__a, __c))
^~
/usr/include/c++/6/bits/stl_algo.h:90:12: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:90:12: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:91:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::iter_swap(__result, __a);
^~~
/usr/include/c++/6/bits/stl_algo.h:92:12: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
else if (__comp(__b, __c))
^~
/usr/include/c++/6/bits/stl_algo.h:92:12: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:92:12: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:93:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::iter_swap(__result, __c);
^~~
/usr/include/c++/6/bits/stl_algo.h:95:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::iter_swap(__result, __b);
^~~
/usr/include/c++/6/bits/stl_algo.h: In function '_RandomAccessIterator std::__unguarded_partition(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1893:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__unguarded_partition(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1893:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1893:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1899:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
while (__comp(__first, __pivot))
^~~~~
/usr/include/c++/6/bits/stl_algo.h:1899:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1899:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1902:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
while (__comp(__pivot, __last))
^~~~~
/usr/include/c++/6/bits/stl_algo.h:1902:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1902:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1906:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::iter_swap(__first, __last);
^~~
In file included from /usr/include/c++/6/bits/stl_algobase.h:71:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/predefined_ops.h: In member function 'bool __gnu_cxx::__ops::_Iter_less_iter::operator()(_Iterator1, _Iterator2) const [with _Iterator1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Iterator2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/predefined_ops.h:42:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
operator()(_Iterator1 __it1, _Iterator2 __it2) const
^~~~~~~~
/usr/include/c++/6/bits/predefined_ops.h:42:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_BI2 std::move_backward(_BI1, _BI1, _BI2) [with _BI1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _BI2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_algobase.h:658:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
move_backward(_BI1 __first, _BI1 __last, _BI2 __result)
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:658:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:658:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:670:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__result);
^
/usr/include/c++/6/bits/stl_algobase.h:670:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:670:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Val_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1818:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__unguarded_linear_insert(_RandomAccessIterator __last,
^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algo.h:61:0,
from /usr/include/c++/6/algorithm:62,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_heap.h: In function 'void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_heap.h:319:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~~~~~~
/usr/include/c++/6/bits/stl_heap.h:319:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_heap.h: In function 'void std::__pop_heap(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_heap.h:237:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__pop_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~~~~~
/usr/include/c++/6/bits/stl_heap.h:237:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_heap.h:237:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function 'void std::iter_swap(_ForwardIterator1, _ForwardIterator2) [with _ForwardIterator1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _ForwardIterator2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_algobase.h:120:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
iter_swap(_ForwardIterator1 __a, _ForwardIterator2 __b)
^~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:120:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_BI2 std::__copy_move_backward_a2(_BI1, _BI1, _BI2) [with bool _IsMove = true; _BI1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _BI2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_algobase.h:595:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__copy_move_backward_a2(_BI1 __first, _BI1 __last, _BI2 __result)
^~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:595:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:595:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:71:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/predefined_ops.h: In member function 'bool __gnu_cxx::__ops::_Val_less_iter::operator()(_Value&, _Iterator) const [with _Value = double; _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/predefined_ops.h:71:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
operator()(_Value& __val, _Iterator __it) const
^~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algo.h:61:0,
from /usr/include/c++/6/algorithm:62,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_heap.h:209:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_heap.h:217:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
if (__comp(__first + __secondChild,
^~
/usr/include/c++/6/bits/stl_heap.h:217:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_heap.h:217:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/stl_algo.h:61:0,
from /usr/include/c++/6/algorithm:62,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_val]':
/usr/include/c++/6/bits/stl_heap.h:124:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__push_heap(_RandomAccessIterator __first,
^~~~~~~~~~~
/usr/include/c++/6/bits/stl_heap.h:129:48: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
while (__holeIndex > __topIndex && __comp(__first + __parent, __value))
~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/stl_algobase.h:71:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/predefined_ops.h: In member function 'bool __gnu_cxx::__ops::_Iter_less_val::operator()(_Iterator, _Value&) const [with _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Value = double]':
/usr/include/c++/6/bits/predefined_ops.h:55:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
operator()(_Iterator __it, _Value& __val) const
^~~~~~~~
[ 27%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.cpp
/<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp: In member function 'virtual double bpp::DRHomogeneousTreeLikelihood::getLogLikelihood() const':
/<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:182:29: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
sort(la.begin(), la.end());
^
/<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp: In member function 'virtual double bpp::DRNonHomogeneousTreeLikelihood::getLogLikelihood() const':
/<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:186:29: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
sort(la.begin(), la.end());
^
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_algo.h:4697:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
sort(_RandomAccessIterator __first, _RandomAccessIterator __last)
^~~~
/usr/include/c++/6/bits/stl_algo.h:4697:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:4707:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__sort(__first, __last, __gnu_cxx::__ops::__iter_less_iter());
^~~
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_algo.h:4697:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
sort(_RandomAccessIterator __first, _RandomAccessIterator __last)
^~~~
/usr/include/c++/6/bits/stl_algo.h:4697:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:4707:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__sort(__first, __last, __gnu_cxx::__ops::__iter_less_iter());
^~~
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1960:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__sort(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~
/usr/include/c++/6/bits/stl_algo.h:1960:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1965:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__introsort_loop(__first, __last,
^~~
/usr/include/c++/6/bits/stl_algo.h:1968:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__final_insertion_sort(__first, __last, __comp);
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1960:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__sort(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~
/usr/include/c++/6/bits/stl_algo.h:1960:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1965:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__introsort_loop(__first, __last,
^~~
/usr/include/c++/6/bits/stl_algo.h:1968:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__final_insertion_sort(__first, __last, __comp);
^~~
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1945:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__partial_sort(__first, __last, __last, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:1945:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1945:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1950:62: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__unguarded_partition_pivot(__first, __last, __comp);
^
/usr/include/c++/6/bits/stl_algo.h:1951:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1877:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__final_insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1877:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1882:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:1883:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__unguarded_insertion_sort(__first + int(_S_threshold), __last,
^~~
/usr/include/c++/6/bits/stl_algo.h:1887:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double>]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__partial_sort(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1925:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__partial_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1925:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1925:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1930:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__heap_select(__first, __middle, __last, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:1930:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1930:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1931:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__sort_heap(__first, __middle, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h: In function '_RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1914:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__unguarded_partition_pivot(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1914:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1918:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__move_median_to_first(__first, __first + 1, __mid, __last - 1,
^~~
/usr/include/c++/6/bits/stl_algo.h:1918:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1918:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1918:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1920:77: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
return std::__unguarded_partition(__first + 1, __last, __first, __comp);
^
/usr/include/c++/6/bits/stl_algo.h:1920:77: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1920:77: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1844:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
if (__comp(__i, __first))
^~
/usr/include/c++/6/bits/stl_algo.h:1844:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1844:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algo.h:1848:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
_GLIBCXX_MOVE_BACKWARD3(__first, __i, __i + 1);
^
/usr/include/c++/6/bits/stl_algo.h:1848:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1848:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__unguarded_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1860:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__unguarded_insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1860:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__x.end());
^
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1945:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__partial_sort(__first, __last, __last, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:1945:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1945:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1950:62: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__unguarded_partition_pivot(__first, __last, __comp);
^
/usr/include/c++/6/bits/stl_algo.h:1951:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1877:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__final_insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1877:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1882:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:1883:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__unguarded_insertion_sort(__first + int(_S_threshold), __last,
^~~
/usr/include/c++/6/bits/stl_algo.h:1887:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
^~~
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1665:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__heap_select(_RandomAccessIterator __first,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1665:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1665:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1669:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__make_heap(__first, __middle, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:1671:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
if (__comp(__i, __first))
^~
/usr/include/c++/6/bits/stl_algo.h:1671:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1671:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1672:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__pop_heap(__first, __middle, __i, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:1672:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1672:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algo.h:61:0,
from /usr/include/c++/6/algorithm:62,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_heap.h: In function 'void std::__sort_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_heap.h:394:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__sort_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~~~~~~
/usr/include/c++/6/bits/stl_heap.h:394:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_heap.h:400:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__pop_heap(__first, __last, __last, __comp);
^~~
/usr/include/c++/6/bits/stl_heap.h:400:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_heap.h:400:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:81:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
if (__comp(__a, __b))
^~
/usr/include/c++/6/bits/stl_algo.h:81:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:81:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:83:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
if (__comp(__b, __c))
^~
/usr/include/c++/6/bits/stl_algo.h:83:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:83:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:84:6: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::iter_swap(__result, __b);
^~~
/usr/include/c++/6/bits/stl_algo.h:85:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
else if (__comp(__a, __c))
^~
/usr/include/c++/6/bits/stl_algo.h:85:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:85:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:86:6: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::iter_swap(__result, __c);
^~~
/usr/include/c++/6/bits/stl_algo.h:88:6: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::iter_swap(__result, __a);
^~~
/usr/include/c++/6/bits/stl_algo.h:90:12: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
else if (__comp(__a, __c))
^~
/usr/include/c++/6/bits/stl_algo.h:90:12: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:90:12: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:91:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::iter_swap(__result, __a);
^~~
/usr/include/c++/6/bits/stl_algo.h:92:12: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
else if (__comp(__b, __c))
^~
/usr/include/c++/6/bits/stl_algo.h:92:12: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:92:12: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:93:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::iter_swap(__result, __c);
^~~
/usr/include/c++/6/bits/stl_algo.h:95:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::iter_swap(__result, __b);
^~~
/usr/include/c++/6/bits/stl_algo.h: In function '_RandomAccessIterator std::__unguarded_partition(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1893:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__unguarded_partition(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1893:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1893:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1899:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
while (__comp(__first, __pivot))
^~~~~
/usr/include/c++/6/bits/stl_algo.h:1899:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1899:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1902:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
while (__comp(__pivot, __last))
^~~~~
/usr/include/c++/6/bits/stl_algo.h:1902:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1902:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1906:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::iter_swap(__first, __last);
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:71:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/predefined_ops.h: In member function 'bool __gnu_cxx::__ops::_Iter_less_iter::operator()(_Iterator1, _Iterator2) const [with _Iterator1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Iterator2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/predefined_ops.h:42:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
operator()(_Iterator1 __it1, _Iterator2 __it2) const
^~~~~~~~
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1225:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
^~~
/usr/include/c++/6/bits/predefined_ops.h:42:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:151:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(__first, __last);
^~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_BI2 std::move_backward(_BI1, _BI1, _BI2) [with _BI1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _BI2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_algobase.h:658:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
move_backward(_BI1 __first, _BI1 __last, _BI2 __result)
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:658:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:658:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:670:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__result);
^
/usr/include/c++/6/bits/stl_algobase.h:670:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:670:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Val_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1818:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__unguarded_linear_insert(_RandomAccessIterator __last,
^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double>]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:126:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
^~~
In file included from /usr/include/c++/6/bits/stl_algo.h:61:0,
from /usr/include/c++/6/algorithm:62,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_heap.h: In function 'void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_heap.h:319:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~~~~~~
/usr/include/c++/6/bits/stl_heap.h:319:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_heap.h: In function 'void std::__pop_heap(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_heap.h:237:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__pop_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~~~~~
/usr/include/c++/6/bits/stl_heap.h:237:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_heap.h:237:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function 'void std::iter_swap(_ForwardIterator1, _ForwardIterator2) [with _ForwardIterator1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _ForwardIterator2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_algobase.h:120:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
iter_swap(_ForwardIterator1 __a, _ForwardIterator2 __b)
^~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:120:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_BI2 std::__copy_move_backward_a2(_BI1, _BI1, _BI2) [with bool _IsMove = true; _BI1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _BI2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_algobase.h:595:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__copy_move_backward_a2(_BI1 __first, _BI1 __last, _BI2 __result)
^~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:595:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:595:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:71:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/predefined_ops.h: In member function 'bool __gnu_cxx::__ops::_Val_less_iter::operator()(_Value&, _Iterator) const [with _Value = double; _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/predefined_ops.h:71:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
operator()(_Value& __val, _Iterator __it) const
^~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algo.h:61:0,
from /usr/include/c++/6/algorithm:62,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_heap.h:209:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_heap.h:217:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
if (__comp(__first + __secondChild,
^~
/usr/include/c++/6/bits/stl_heap.h:217:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_heap.h:217:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/stl_algo.h:61:0,
from /usr/include/c++/6/algorithm:62,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_val]':
/usr/include/c++/6/bits/stl_heap.h:124:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__push_heap(_RandomAccessIterator __first,
^~~~~~~~~~~
/usr/include/c++/6/bits/stl_heap.h:129:48: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
while (__holeIndex > __topIndex && __comp(__first + __parent, __value))
~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:71:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/predefined_ops.h: In member function 'bool __gnu_cxx::__ops::_Iter_less_val::operator()(_Iterator, _Value&) const [with _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Value = double]':
/usr/include/c++/6/bits/predefined_ops.h:55:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
operator()(_Iterator __it, _Value& __val) const
^~~~~~~~
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__partial_sort(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1925:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__partial_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1925:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1925:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1930:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__heap_select(__first, __middle, __last, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:1930:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1930:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1931:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__sort_heap(__first, __middle, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h: In function '_RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1914:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__unguarded_partition_pivot(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1914:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1918:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__move_median_to_first(__first, __first + 1, __mid, __last - 1,
^~~
/usr/include/c++/6/bits/stl_algo.h:1918:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1918:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1918:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1920:77: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
return std::__unguarded_partition(__first + 1, __last, __first, __comp);
^
/usr/include/c++/6/bits/stl_algo.h:1920:77: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1920:77: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1844:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
if (__comp(__i, __first))
^~
/usr/include/c++/6/bits/stl_algo.h:1844:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1844:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algo.h:1848:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
_GLIBCXX_MOVE_BACKWARD3(__first, __i, __i + 1);
^
/usr/include/c++/6/bits/stl_algo.h:1848:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1848:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__unguarded_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1860:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__unguarded_insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1860:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__result));
^
[ 27%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.cpp
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1665:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__heap_select(_RandomAccessIterator __first,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1665:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1665:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1669:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__make_heap(__first, __middle, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:1671:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
if (__comp(__i, __first))
^~
/usr/include/c++/6/bits/stl_algo.h:1671:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1671:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1672:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__pop_heap(__first, __middle, __i, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:1672:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1672:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algo.h:61:0,
from /usr/include/c++/6/algorithm:62,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_heap.h: In function 'void std::__sort_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_heap.h:394:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__sort_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~~~~~~
/usr/include/c++/6/bits/stl_heap.h:394:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_heap.h:400:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__pop_heap(__first, __last, __last, __comp);
^~~
/usr/include/c++/6/bits/stl_heap.h:400:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_heap.h:400:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:81:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
if (__comp(__a, __b))
^~
/usr/include/c++/6/bits/stl_algo.h:81:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:81:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:83:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
if (__comp(__b, __c))
^~
/usr/include/c++/6/bits/stl_algo.h:83:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:83:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:84:6: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::iter_swap(__result, __b);
^~~
/usr/include/c++/6/bits/stl_algo.h:85:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
else if (__comp(__a, __c))
^~
/usr/include/c++/6/bits/stl_algo.h:85:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:85:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:86:6: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::iter_swap(__result, __c);
^~~
/usr/include/c++/6/bits/stl_algo.h:88:6: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::iter_swap(__result, __a);
^~~
/usr/include/c++/6/bits/stl_algo.h:90:12: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
else if (__comp(__a, __c))
^~
/usr/include/c++/6/bits/stl_algo.h:90:12: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:90:12: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:91:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::iter_swap(__result, __a);
^~~
/usr/include/c++/6/bits/stl_algo.h:92:12: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
else if (__comp(__b, __c))
^~
/usr/include/c++/6/bits/stl_algo.h:92:12: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:92:12: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:93:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::iter_swap(__result, __c);
^~~
/usr/include/c++/6/bits/stl_algo.h:95:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::iter_swap(__result, __b);
^~~
/usr/include/c++/6/bits/stl_algo.h: In function '_RandomAccessIterator std::__unguarded_partition(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1893:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__unguarded_partition(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1893:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1893:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1899:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
while (__comp(__first, __pivot))
^~~~~
/usr/include/c++/6/bits/stl_algo.h:1899:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1899:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1902:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
while (__comp(__pivot, __last))
^~~~~
/usr/include/c++/6/bits/stl_algo.h:1902:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1902:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1906:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::iter_swap(__first, __last);
^~~
In file included from /usr/include/c++/6/bits/stl_algobase.h:71:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/predefined_ops.h: In member function 'bool __gnu_cxx::__ops::_Iter_less_iter::operator()(_Iterator1, _Iterator2) const [with _Iterator1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Iterator2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/predefined_ops.h:42:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
operator()(_Iterator1 __it1, _Iterator2 __it2) const
^~~~~~~~
/usr/include/c++/6/bits/predefined_ops.h:42:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_BI2 std::move_backward(_BI1, _BI1, _BI2) [with _BI1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _BI2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_algobase.h:658:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
move_backward(_BI1 __first, _BI1 __last, _BI2 __result)
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:658:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:658:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:670:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__result);
^
/usr/include/c++/6/bits/stl_algobase.h:670:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:670:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Val_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1818:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__unguarded_linear_insert(_RandomAccessIterator __last,
^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algo.h:61:0,
from /usr/include/c++/6/algorithm:62,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_heap.h: In function 'void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_heap.h:319:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~~~~~~
/usr/include/c++/6/bits/stl_heap.h:319:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_heap.h: In function 'void std::__pop_heap(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_heap.h:237:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__pop_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~~~~~
/usr/include/c++/6/bits/stl_heap.h:237:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_heap.h:237:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function 'void std::iter_swap(_ForwardIterator1, _ForwardIterator2) [with _ForwardIterator1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _ForwardIterator2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_algobase.h:120:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
iter_swap(_ForwardIterator1 __a, _ForwardIterator2 __b)
^~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:120:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_BI2 std::__copy_move_backward_a2(_BI1, _BI1, _BI2) [with bool _IsMove = true; _BI1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _BI2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_algobase.h:595:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__copy_move_backward_a2(_BI1 __first, _BI1 __last, _BI2 __result)
^~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:595:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:595:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:71:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/predefined_ops.h: In member function 'bool __gnu_cxx::__ops::_Val_less_iter::operator()(_Value&, _Iterator) const [with _Value = double; _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/predefined_ops.h:71:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
operator()(_Value& __val, _Iterator __it) const
^~~~~~~~
[ 27%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp.o
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algo.h:61:0,
from /usr/include/c++/6/algorithm:62,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_heap.h:209:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_heap.h:217:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
if (__comp(__first + __secondChild,
^~
/usr/include/c++/6/bits/stl_heap.h:217:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_heap.h:217:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/stl_algo.h:61:0,
from /usr/include/c++/6/algorithm:62,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_val]':
/usr/include/c++/6/bits/stl_heap.h:124:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__push_heap(_RandomAccessIterator __first,
^~~~~~~~~~~
/usr/include/c++/6/bits/stl_heap.h:129:48: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
while (__holeIndex > __topIndex && __comp(__first + __parent, __value))
~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/stl_algobase.h:71:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/predefined_ops.h: In member function 'bool __gnu_cxx::__ops::_Iter_less_val::operator()(_Iterator, _Value&) const [with _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Value = double]':
/usr/include/c++/6/bits/predefined_ops.h:55:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
operator()(_Iterator __it, _Value& __val) const
^~~~~~~~
[ 27%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 28%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 28%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__x.end());
^
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1225:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
^~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:151:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(__first, __last);
^~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:126:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__x.end());
^
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
^~~
[ 28%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1225:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
^~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:151:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(__first, __last);
^~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:126:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 29%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.cpp
In file included from /usr/include/c++/6/map:61:0,
from /usr/include/Bpp/Utils/MapTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.cpp:40:
/usr/include/c++/6/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = const bpp::Node*; _Tp = double; _Compare = std::less<const bpp::Node*>; _Alloc = std::allocator<std::pair<const bpp::Node* const, double> >]':
/usr/include/c++/6/bits/stl_map.h:502:4: note: parameter passing for argument of type 'std::_Rb_tree<const bpp::Node*, std::pair<const bpp::Node* const, double>, std::_Select1st<std::pair<const bpp::Node* const, double> >, std::less<const bpp::Node*>, std::allocator<std::pair<const bpp::Node* const, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const bpp::Node* const, double> >}' will change in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
In file included from /usr/include/c++/6/map:60:0,
from /usr/include/Bpp/Utils/MapTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.cpp:40:
/usr/include/c++/6/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const bpp::Node*&&>, std::tuple<>}; _Key = const bpp::Node*; _Val = std::pair<const bpp::Node* const, double>; _KeyOfValue = std::_Select1st<std::pair<const bpp::Node* const, double> >; _Compare = std::less<const bpp::Node*>; _Alloc = std::allocator<std::pair<const bpp::Node* const, double> >]':
/usr/include/c++/6/bits/stl_tree.h:2193:7: note: parameter passing for argument of type 'std::_Rb_tree<const bpp::Node*, std::pair<const bpp::Node* const, double>, std::_Select1st<std::pair<const bpp::Node* const, double> >, std::less<const bpp::Node*>, std::allocator<std::pair<const bpp::Node* const, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const bpp::Node* const, double> >}' will change in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
In file included from /usr/include/c++/6/map:60:0,
from /usr/include/Bpp/Utils/MapTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.cpp:40:
/usr/include/c++/6/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = const bpp::Node*; _Val = std::pair<const bpp::Node* const, double>; _KeyOfValue = std::_Select1st<std::pair<const bpp::Node* const, double> >; _Compare = std::less<const bpp::Node*>; _Alloc = std::allocator<std::pair<const bpp::Node* const, double> >]':
/usr/include/c++/6/bits/stl_tree.h:1928:5: note: parameter passing for argument of type 'std::_Rb_tree<const bpp::Node*, std::pair<const bpp::Node* const, double>, std::_Select1st<std::pair<const bpp::Node* const, double> >, std::less<const bpp::Node*>, std::allocator<std::pair<const bpp::Node* const, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const bpp::Node* const, double> >}' will change in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 29%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 29%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/RewardMappingTools.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/RewardMappingTools.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMappingTools.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Sequence.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../AncestralStateReconstruction.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Sequence.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../AncestralStateReconstruction.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp:40:
/usr/include/c++/6/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__x.end());
^
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Sequence.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../AncestralStateReconstruction.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Sequence.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../AncestralStateReconstruction.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1225:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
^~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Sequence.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../AncestralStateReconstruction.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Sequence.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../AncestralStateReconstruction.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:151:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(__first, __last);
^~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Sequence.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../AncestralStateReconstruction.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Sequence.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../AncestralStateReconstruction.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Sequence.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../AncestralStateReconstruction.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Sequence.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../AncestralStateReconstruction.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:126:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Sequence.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../AncestralStateReconstruction.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Sequence.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../AncestralStateReconstruction.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Sequence.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../AncestralStateReconstruction.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Sequence.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../AncestralStateReconstruction.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Sequence.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../AncestralStateReconstruction.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Sequence.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../AncestralStateReconstruction.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Sequence.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../AncestralStateReconstruction.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Sequence.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../AncestralStateReconstruction.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
[ 29%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 29%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp
/<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp: In member function 'void bpp::BranchLikelihood::computeLogLikelihood()':
/<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:115:29: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
sort(la.begin(), la.end());
^
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_algo.h:4697:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
sort(_RandomAccessIterator __first, _RandomAccessIterator __last)
^~~~
/usr/include/c++/6/bits/stl_algo.h:4697:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:4707:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__sort(__first, __last, __gnu_cxx::__ops::__iter_less_iter());
^~~
In file included from /usr/include/c++/6/map:61:0,
from /usr/include/Bpp/Utils/MapTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_map.h:483:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1960:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__sort(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~
/usr/include/c++/6/bits/stl_algo.h:1960:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1965:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__introsort_loop(__first, __last,
^~~
/usr/include/c++/6/bits/stl_algo.h:1968:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__final_insertion_sort(__first, __last, __comp);
^~~
In file included from /usr/include/c++/6/map:60:0,
from /usr/include/Bpp/Utils/MapTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const int&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_tree.h:2193:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1945:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__partial_sort(__first, __last, __last, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:1945:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1945:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1950:62: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__unguarded_partition_pivot(__first, __last, __comp);
^
/usr/include/c++/6/bits/stl_algo.h:1951:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1877:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__final_insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1877:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1882:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:1883:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__unguarded_insertion_sort(__first + int(_S_threshold), __last,
^~~
/usr/include/c++/6/bits/stl_algo.h:1887:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
^~~
In file included from /usr/include/c++/6/map:60:0,
from /usr/include/Bpp/Utils/MapTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_tree.h:1928:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double>]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__partial_sort(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1925:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__partial_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1925:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1925:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1930:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__heap_select(__first, __middle, __last, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:1930:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1930:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1931:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__sort_heap(__first, __middle, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h: In function '_RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1914:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__unguarded_partition_pivot(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1914:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1918:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__move_median_to_first(__first, __first + 1, __mid, __last - 1,
^~~
/usr/include/c++/6/bits/stl_algo.h:1918:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1918:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1918:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1920:77: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
return std::__unguarded_partition(__first + 1, __last, __first, __comp);
^
/usr/include/c++/6/bits/stl_algo.h:1920:77: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1920:77: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1844:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
if (__comp(__i, __first))
^~
/usr/include/c++/6/bits/stl_algo.h:1844:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1844:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algo.h:1848:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
_GLIBCXX_MOVE_BACKWARD3(__first, __i, __i + 1);
^
/usr/include/c++/6/bits/stl_algo.h:1848:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1848:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__unguarded_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1860:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__unguarded_insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1860:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1665:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__heap_select(_RandomAccessIterator __first,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1665:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1665:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1669:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__make_heap(__first, __middle, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:1671:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
if (__comp(__i, __first))
^~
/usr/include/c++/6/bits/stl_algo.h:1671:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1671:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1672:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__pop_heap(__first, __middle, __i, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:1672:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1672:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algo.h:61:0,
from /usr/include/c++/6/algorithm:62,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_heap.h: In function 'void std::__sort_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_heap.h:394:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__sort_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~~~~~~
/usr/include/c++/6/bits/stl_heap.h:394:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_heap.h:400:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__pop_heap(__first, __last, __last, __comp);
^~~
/usr/include/c++/6/bits/stl_heap.h:400:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_heap.h:400:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:81:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
if (__comp(__a, __b))
^~
/usr/include/c++/6/bits/stl_algo.h:81:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:81:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:83:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
if (__comp(__b, __c))
^~
/usr/include/c++/6/bits/stl_algo.h:83:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:83:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:84:6: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::iter_swap(__result, __b);
^~~
/usr/include/c++/6/bits/stl_algo.h:85:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
else if (__comp(__a, __c))
^~
/usr/include/c++/6/bits/stl_algo.h:85:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:85:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:86:6: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::iter_swap(__result, __c);
^~~
/usr/include/c++/6/bits/stl_algo.h:88:6: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::iter_swap(__result, __a);
^~~
/usr/include/c++/6/bits/stl_algo.h:90:12: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
else if (__comp(__a, __c))
^~
/usr/include/c++/6/bits/stl_algo.h:90:12: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:90:12: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:91:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::iter_swap(__result, __a);
^~~
/usr/include/c++/6/bits/stl_algo.h:92:12: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
else if (__comp(__b, __c))
^~
/usr/include/c++/6/bits/stl_algo.h:92:12: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:92:12: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:93:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::iter_swap(__result, __c);
^~~
/usr/include/c++/6/bits/stl_algo.h:95:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::iter_swap(__result, __b);
^~~
/usr/include/c++/6/bits/stl_algo.h: In function '_RandomAccessIterator std::__unguarded_partition(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1893:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__unguarded_partition(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1893:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1893:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1899:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
while (__comp(__first, __pivot))
^~~~~
/usr/include/c++/6/bits/stl_algo.h:1899:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1899:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1902:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
while (__comp(__pivot, __last))
^~~~~
/usr/include/c++/6/bits/stl_algo.h:1902:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1902:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1906:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::iter_swap(__first, __last);
^~~
In file included from /usr/include/c++/6/bits/stl_algobase.h:71:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/predefined_ops.h: In member function 'bool __gnu_cxx::__ops::_Iter_less_iter::operator()(_Iterator1, _Iterator2) const [with _Iterator1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Iterator2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/predefined_ops.h:42:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
operator()(_Iterator1 __it1, _Iterator2 __it2) const
^~~~~~~~
/usr/include/c++/6/bits/predefined_ops.h:42:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_BI2 std::move_backward(_BI1, _BI1, _BI2) [with _BI1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _BI2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_algobase.h:658:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
move_backward(_BI1 __first, _BI1 __last, _BI2 __result)
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:658:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:658:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:670:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__result);
^
/usr/include/c++/6/bits/stl_algobase.h:670:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:670:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Val_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1818:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__unguarded_linear_insert(_RandomAccessIterator __last,
^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algo.h:61:0,
from /usr/include/c++/6/algorithm:62,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_heap.h: In function 'void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_heap.h:319:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~~~~~~
/usr/include/c++/6/bits/stl_heap.h:319:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_heap.h: In function 'void std::__pop_heap(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_heap.h:237:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__pop_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~~~~~
/usr/include/c++/6/bits/stl_heap.h:237:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_heap.h:237:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function 'void std::iter_swap(_ForwardIterator1, _ForwardIterator2) [with _ForwardIterator1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _ForwardIterator2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_algobase.h:120:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
iter_swap(_ForwardIterator1 __a, _ForwardIterator2 __b)
^~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:120:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_BI2 std::__copy_move_backward_a2(_BI1, _BI1, _BI2) [with bool _IsMove = true; _BI1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _BI2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_algobase.h:595:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__copy_move_backward_a2(_BI1 __first, _BI1 __last, _BI2 __result)
^~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:595:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:595:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:71:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/predefined_ops.h: In member function 'bool __gnu_cxx::__ops::_Val_less_iter::operator()(_Value&, _Iterator) const [with _Value = double; _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/predefined_ops.h:71:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
operator()(_Value& __val, _Iterator __it) const
^~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algo.h:61:0,
from /usr/include/c++/6/algorithm:62,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_heap.h:209:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_heap.h:217:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
if (__comp(__first + __secondChild,
^~
/usr/include/c++/6/bits/stl_heap.h:217:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_heap.h:217:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/stl_algo.h:61:0,
from /usr/include/c++/6/algorithm:62,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_val]':
/usr/include/c++/6/bits/stl_heap.h:124:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__push_heap(_RandomAccessIterator __first,
^~~~~~~~~~~
/usr/include/c++/6/bits/stl_heap.h:129:48: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
while (__holeIndex > __topIndex && __comp(__first + __parent, __value))
~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/stl_algobase.h:71:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/predefined_ops.h: In member function 'bool __gnu_cxx::__ops::_Iter_less_val::operator()(_Iterator, _Value&) const [with _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Value = double]':
/usr/include/c++/6/bits/predefined_ops.h:55:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
operator()(_Iterator __it, _Value& __val) const
^~~~~~~~
[ 30%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/SubstitutionRegister.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/SubstitutionRegister.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMappingTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMappingTools.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMappingTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMappingTools.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMappingTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMappingTools.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMappingTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMappingTools.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMappingTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMappingTools.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMappingTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMappingTools.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMappingTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMappingTools.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMappingTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMappingTools.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMappingTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMappingTools.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMappingTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMappingTools.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 31%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/PseudoNewtonOptimizer.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/PseudoNewtonOptimizer.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PseudoNewtonOptimizer.cpp
/<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp: In member function 'std::pair<std::vector<std::__cxx11::basic_string<char> >, std::vector<double> > bpp::PairedSiteLikelihoods::computeExpectedLikelihoodWeights(int) const':
/<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp:149:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
double Ymax = *max_element(models_logliks.begin(), models_logliks.end());
~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp:159:88: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
double sumELLD = accumulate(exp_logliks_diffs.begin(), exp_logliks_diffs.end(), 0.0);
^
In file included from /usr/include/c++/6/vector:64:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp:41:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:69:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp:41:
/usr/include/c++/6/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__x.end());
^
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
^~~
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.h:48,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp:46:
/usr/include/c++/6/bits/stl_algo.h: In function '_FIter std::max_element(_FIter, _FIter) [with _FIter = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_algo.h:5539:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
max_element(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:5539:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:5549:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__gnu_cxx::__ops::__iter_less_iter());
^
In file included from /usr/include/c++/6/numeric:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp:43:
/usr/include/c++/6/bits/stl_numeric.h: In function '_Tp std::accumulate(_InputIterator, _InputIterator, _Tp) [with _InputIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Tp = double]':
/usr/include/c++/6/bits/stl_numeric.h:120:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
accumulate(_InputIterator __first, _InputIterator __last, _Tp __init)
^~~~~~~~~~
/usr/include/c++/6/bits/stl_numeric.h:120:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:64:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp:41:
/usr/include/c++/6/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1225:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
^~~
In file included from /usr/include/c++/6/vector:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp:41:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp:41:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Tp = double]':
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:151:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
_Destroy(__first, __last);
^~~~~~~~
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.h:48,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp:46:
/usr/include/c++/6/bits/stl_algo.h: In function '_ForwardIterator std::__max_element(_ForwardIterator, _ForwardIterator, _Compare) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:5518:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__max_element(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:5518:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:5524:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
if (__comp(__result, __first))
^~
/usr/include/c++/6/bits/stl_algo.h:5524:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:5524:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/vector:60,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp:41:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp:41:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp:41:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:126:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
^~~
In file included from /usr/include/c++/6/bits/stl_algobase.h:71:0,
from /usr/include/c++/6/vector:60,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp:41:
/usr/include/c++/6/bits/predefined_ops.h: In member function 'bool __gnu_cxx::__ops::_Iter_less_iter::operator()(_Iterator1, _Iterator2) const [with _Iterator1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Iterator2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/predefined_ops.h:42:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
operator()(_Iterator1 __it1, _Iterator2 __it2) const
^~~~~~~~
/usr/include/c++/6/bits/predefined_ops.h:42:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/vector:60,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp:41:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double>]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp:41:
/usr/include/c++/6/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp:41:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
[ 31%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp
[ 31%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/RASTools.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/RASTools.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RASTools.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
[ 31%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/WeightedSubstitutionCount.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/WeightedSubstitutionCount.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.cpp
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__x.end());
^
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
^~~
[ 31%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.cpp
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1225:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
^~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:151:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(__first, __last);
^~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:126:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 32%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp
[ 32%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/AbstractBiblioMixedSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/AbstractBiblioMixedSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractBiblioMixedSubstitutionModel.cpp
[ 32%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.cpp:41:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/map:61:0,
from /usr/include/Bpp/Utils/MapTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.cpp:41:
/usr/include/c++/6/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = const bpp::Node*; _Tp = double; _Compare = std::less<const bpp::Node*>; _Alloc = std::allocator<std::pair<const bpp::Node* const, double> >]':
/usr/include/c++/6/bits/stl_map.h:502:4: note: parameter passing for argument of type 'std::_Rb_tree<const bpp::Node*, std::pair<const bpp::Node* const, double>, std::_Select1st<std::pair<const bpp::Node* const, double> >, std::less<const bpp::Node*>, std::allocator<std::pair<const bpp::Node* const, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const bpp::Node* const, double> >}' will change in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/map:60:0,
from /usr/include/Bpp/Utils/MapTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.cpp:41:
/usr/include/c++/6/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const bpp::Node*&&>, std::tuple<>}; _Key = const bpp::Node*; _Val = std::pair<const bpp::Node* const, double>; _KeyOfValue = std::_Select1st<std::pair<const bpp::Node* const, double> >; _Compare = std::less<const bpp::Node*>; _Alloc = std::allocator<std::pair<const bpp::Node* const, double> >]':
/usr/include/c++/6/bits/stl_tree.h:2193:7: note: parameter passing for argument of type 'std::_Rb_tree<const bpp::Node*, std::pair<const bpp::Node* const, double>, std::_Select1st<std::pair<const bpp::Node* const, double> >, std::less<const bpp::Node*>, std::allocator<std::pair<const bpp::Node* const, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const bpp::Node* const, double> >}' will change in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.cpp:41:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/map:60:0,
from /usr/include/Bpp/Utils/MapTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.cpp:41:
/usr/include/c++/6/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = const bpp::Node*; _Val = std::pair<const bpp::Node* const, double>; _KeyOfValue = std::_Select1st<std::pair<const bpp::Node* const, double> >; _Compare = std::less<const bpp::Node*>; _Alloc = std::allocator<std::pair<const bpp::Node* const, double> >]':
/usr/include/c++/6/bits/stl_tree.h:1928:5: note: parameter passing for argument of type 'std::_Rb_tree<const bpp::Node*, std::pair<const bpp::Node* const, double>, std::_Select1st<std::pair<const bpp::Node* const, double> >, std::less<const bpp::Node*>, std::allocator<std::pair<const bpp::Node* const, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const bpp::Node* const, double> >}' will change in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.cpp:41:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.cpp:41:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:69:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__x.end());
^
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
^~~
[ 33%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/AbstractBiblioSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/AbstractBiblioSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractBiblioSubstitutionModel.cpp
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1225:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
^~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Tp = double]':
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:151:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
_Destroy(__first, __last);
^~~~~~~~
[ 33%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:126:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double>]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:39:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 33%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp
/<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp: In member function 'virtual double bpp::RHomogeneousTreeLikelihood::getLogLikelihood() const':
/<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:172:29: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
sort(la.begin(), la.end());
^
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:69:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__x.end());
^
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
^~~
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_algo.h:4697:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
sort(_RandomAccessIterator __first, _RandomAccessIterator __last)
^~~~
/usr/include/c++/6/bits/stl_algo.h:4697:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:4707:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__sort(__first, __last, __gnu_cxx::__ops::__iter_less_iter());
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1225:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
^~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Tp = double]':
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:151:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
_Destroy(__first, __last);
^~~~~~~~
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1960:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__sort(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~
/usr/include/c++/6/bits/stl_algo.h:1960:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1965:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__introsort_loop(__first, __last,
^~~
/usr/include/c++/6/bits/stl_algo.h:1968:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__final_insertion_sort(__first, __last, __comp);
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:126:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
^~~
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1945:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__partial_sort(__first, __last, __last, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:1945:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1945:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1950:62: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__unguarded_partition_pivot(__first, __last, __comp);
^
/usr/include/c++/6/bits/stl_algo.h:1951:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1877:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__final_insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1877:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1882:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:1883:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__unguarded_insertion_sort(__first + int(_S_threshold), __last,
^~~
/usr/include/c++/6/bits/stl_algo.h:1887:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double>]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp:40:
/usr/include/c++/6/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__x.end());
^
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
^~~
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__partial_sort(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1925:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__partial_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1925:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1925:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1930:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__heap_select(__first, __middle, __last, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:1930:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1930:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1931:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__sort_heap(__first, __middle, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h: In function '_RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1914:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__unguarded_partition_pivot(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1914:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1918:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__move_median_to_first(__first, __first + 1, __mid, __last - 1,
^~~
/usr/include/c++/6/bits/stl_algo.h:1918:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1918:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1918:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1920:77: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
return std::__unguarded_partition(__first + 1, __last, __first, __comp);
^
/usr/include/c++/6/bits/stl_algo.h:1920:77: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1920:77: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1844:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
if (__comp(__i, __first))
^~
/usr/include/c++/6/bits/stl_algo.h:1844:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1844:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algo.h:1848:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
_GLIBCXX_MOVE_BACKWARD3(__first, __i, __i + 1);
^
/usr/include/c++/6/bits/stl_algo.h:1848:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1848:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__unguarded_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1860:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__unguarded_insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1860:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1665:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__heap_select(_RandomAccessIterator __first,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1665:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1665:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1669:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__make_heap(__first, __middle, __comp);
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_algo.h:1671:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
if (__comp(__i, __first))
^~
/usr/include/c++/6/bits/stl_algo.h:1671:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1671:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1672:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__pop_heap(__first, __middle, __i, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:1672:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1672:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algo.h:61:0,
from /usr/include/c++/6/algorithm:62,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_heap.h: In function 'void std::__sort_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_heap.h:394:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__sort_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~~~~~~
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1225:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
^~~
/usr/include/c++/6/bits/stl_heap.h:394:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_heap.h:400:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__pop_heap(__first, __last, __last, __comp);
^~~
/usr/include/c++/6/bits/stl_heap.h:400:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_heap.h:400:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:151:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(__first, __last);
^~~~~~~~
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:81:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
if (__comp(__a, __b))
^~
/usr/include/c++/6/bits/stl_algo.h:81:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:81:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:83:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
if (__comp(__b, __c))
^~
/usr/include/c++/6/bits/stl_algo.h:83:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:83:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:84:6: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::iter_swap(__result, __b);
^~~
/usr/include/c++/6/bits/stl_algo.h:85:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
else if (__comp(__a, __c))
^~
/usr/include/c++/6/bits/stl_algo.h:85:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:85:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:86:6: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::iter_swap(__result, __c);
^~~
/usr/include/c++/6/bits/stl_algo.h:88:6: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::iter_swap(__result, __a);
^~~
/usr/include/c++/6/bits/stl_algo.h:90:12: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
else if (__comp(__a, __c))
^~
/usr/include/c++/6/bits/stl_algo.h:90:12: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:90:12: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:91:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::iter_swap(__result, __a);
^~~
/usr/include/c++/6/bits/stl_algo.h:92:12: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
else if (__comp(__b, __c))
^~
/usr/include/c++/6/bits/stl_algo.h:92:12: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:92:12: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:93:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::iter_swap(__result, __c);
^~~
/usr/include/c++/6/bits/stl_algo.h:95:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::iter_swap(__result, __b);
^~~
/usr/include/c++/6/bits/stl_algo.h: In function '_RandomAccessIterator std::__unguarded_partition(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1893:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__unguarded_partition(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1893:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1893:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1899:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
while (__comp(__first, __pivot))
^~~~~
/usr/include/c++/6/bits/stl_algo.h:1899:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1899:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1902:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
while (__comp(__pivot, __last))
^~~~~
/usr/include/c++/6/bits/stl_algo.h:1902:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1902:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1906:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::iter_swap(__first, __last);
^~~
In file included from /usr/include/c++/6/bits/stl_algobase.h:71:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/predefined_ops.h: In member function 'bool __gnu_cxx::__ops::_Iter_less_iter::operator()(_Iterator1, _Iterator2) const [with _Iterator1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Iterator2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/predefined_ops.h:42:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
operator()(_Iterator1 __it1, _Iterator2 __it2) const
^~~~~~~~
/usr/include/c++/6/bits/predefined_ops.h:42:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_BI2 std::move_backward(_BI1, _BI1, _BI2) [with _BI1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _BI2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_algobase.h:658:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
move_backward(_BI1 __first, _BI1 __last, _BI2 __result)
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:658:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:658:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:670:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__result);
^
/usr/include/c++/6/bits/stl_algobase.h:670:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:670:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Val_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1818:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__unguarded_linear_insert(_RandomAccessIterator __last,
^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:126:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
^~~
In file included from /usr/include/c++/6/bits/stl_algo.h:61:0,
from /usr/include/c++/6/algorithm:62,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_heap.h: In function 'void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_heap.h:319:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~~~~~~
/usr/include/c++/6/bits/stl_heap.h:319:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_heap.h: In function 'void std::__pop_heap(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_heap.h:237:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__pop_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~~~~~
/usr/include/c++/6/bits/stl_heap.h:237:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_heap.h:237:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function 'void std::iter_swap(_ForwardIterator1, _ForwardIterator2) [with _ForwardIterator1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _ForwardIterator2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_algobase.h:120:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
iter_swap(_ForwardIterator1 __a, _ForwardIterator2 __b)
^~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:120:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_BI2 std::__copy_move_backward_a2(_BI1, _BI1, _BI2) [with bool _IsMove = true; _BI1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _BI2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_algobase.h:595:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__copy_move_backward_a2(_BI1 __first, _BI1 __last, _BI2 __result)
^~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:595:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:595:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:71:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/predefined_ops.h: In member function 'bool __gnu_cxx::__ops::_Val_less_iter::operator()(_Value&, _Iterator) const [with _Value = double; _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/predefined_ops.h:71:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
operator()(_Value& __val, _Iterator __it) const
^~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algo.h:61:0,
from /usr/include/c++/6/algorithm:62,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_heap.h:209:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_heap.h:217:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
if (__comp(__first + __secondChild,
^~
/usr/include/c++/6/bits/stl_heap.h:217:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_heap.h:217:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_val]':
/usr/include/c++/6/bits/stl_heap.h:124:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__push_heap(_RandomAccessIterator __first,
^~~~~~~~~~~
/usr/include/c++/6/bits/stl_heap.h:129:48: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
while (__holeIndex > __topIndex && __comp(__first + __parent, __value))
~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/stl_algobase.h:71:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/predefined_ops.h: In member function 'bool __gnu_cxx::__ops::_Iter_less_val::operator()(_Iterator, _Value&) const [with _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Value = double]':
/usr/include/c++/6/bits/predefined_ops.h:55:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
operator()(_Iterator __it, _Value& __val) const
^~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
[ 33%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 33%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp
[ 34%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__x.end());
^
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1225:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
^~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:151:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(__first, __last);
^~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:126:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 35%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__x.end());
^
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1225:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
^~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:151:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(__first, __last);
^~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:126:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 35%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:69:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp:40:
/usr/include/c++/6/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__x.end());
^
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1225:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
^~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Tp = double]':
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:151:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
_Destroy(__first, __last);
^~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:126:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double>]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp: In member function 'virtual double bpp::RNonHomogeneousTreeLikelihood::getLogLikelihood() const':
/<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:178:29: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
sort(la.begin(), la.end());
^
[ 35%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_algo.h:4697:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
sort(_RandomAccessIterator __first, _RandomAccessIterator __last)
^~~~
/usr/include/c++/6/bits/stl_algo.h:4697:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:4707:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__sort(__first, __last, __gnu_cxx::__ops::__iter_less_iter());
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1960:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__sort(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~
/usr/include/c++/6/bits/stl_algo.h:1960:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1965:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__introsort_loop(__first, __last,
^~~
/usr/include/c++/6/bits/stl_algo.h:1968:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__final_insertion_sort(__first, __last, __comp);
^~~
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1945:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__partial_sort(__first, __last, __last, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:1945:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1945:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1950:62: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__unguarded_partition_pivot(__first, __last, __comp);
^
/usr/include/c++/6/bits/stl_algo.h:1951:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1877:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__final_insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1877:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1882:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:1883:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__unguarded_insertion_sort(__first + int(_S_threshold), __last,
^~~
/usr/include/c++/6/bits/stl_algo.h:1887:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double>]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__partial_sort(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1925:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__partial_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1925:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1925:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1930:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__heap_select(__first, __middle, __last, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:1930:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1930:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1931:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__sort_heap(__first, __middle, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h: In function '_RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1914:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__unguarded_partition_pivot(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1914:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1918:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__move_median_to_first(__first, __first + 1, __mid, __last - 1,
^~~
/usr/include/c++/6/bits/stl_algo.h:1918:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1918:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1918:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1920:77: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
return std::__unguarded_partition(__first + 1, __last, __first, __comp);
^
/usr/include/c++/6/bits/stl_algo.h:1920:77: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1920:77: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1844:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
if (__comp(__i, __first))
^~
/usr/include/c++/6/bits/stl_algo.h:1844:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1844:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/6/bits/stl_algo.h:1848:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
_GLIBCXX_MOVE_BACKWARD3(__first, __i, __i + 1);
^
/usr/include/c++/6/bits/stl_algo.h:1848:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1848:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__unguarded_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1860:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__unguarded_insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1860:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1665:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__heap_select(_RandomAccessIterator __first,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1665:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1665:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1669:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__make_heap(__first, __middle, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:1671:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
if (__comp(__i, __first))
^~
/usr/include/c++/6/bits/stl_algo.h:1671:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1671:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1672:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__pop_heap(__first, __middle, __i, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:1672:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1672:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algo.h:61:0,
from /usr/include/c++/6/algorithm:62,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/6/bits/stl_heap.h: In function 'void std::__sort_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_heap.h:394:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__sort_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~~~~~~
/usr/include/c++/6/bits/stl_heap.h:394:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_heap.h:400:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__pop_heap(__first, __last, __last, __comp);
^~~
/usr/include/c++/6/bits/stl_heap.h:400:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_heap.h:400:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:81:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
if (__comp(__a, __b))
^~
/usr/include/c++/6/bits/stl_algo.h:81:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:81:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:83:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
if (__comp(__b, __c))
^~
/usr/include/c++/6/bits/stl_algo.h:83:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:83:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:84:6: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::iter_swap(__result, __b);
^~~
/usr/include/c++/6/bits/stl_algo.h:85:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
else if (__comp(__a, __c))
^~
/usr/include/c++/6/bits/stl_algo.h:85:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:85:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:86:6: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::iter_swap(__result, __c);
^~~
/usr/include/c++/6/bits/stl_algo.h:88:6: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::iter_swap(__result, __a);
^~~
/usr/include/c++/6/bits/stl_algo.h:90:12: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
else if (__comp(__a, __c))
^~
/usr/include/c++/6/bits/stl_algo.h:90:12: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:90:12: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:91:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::iter_swap(__result, __a);
^~~
/usr/include/c++/6/bits/stl_algo.h:92:12: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
else if (__comp(__b, __c))
^~
/usr/include/c++/6/bits/stl_algo.h:92:12: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:92:12: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:93:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::iter_swap(__result, __c);
^~~
/usr/include/c++/6/bits/stl_algo.h:95:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::iter_swap(__result, __b);
^~~
/usr/include/c++/6/bits/stl_algo.h: In function '_RandomAccessIterator std::__unguarded_partition(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1893:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__unguarded_partition(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1893:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1893:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1899:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
while (__comp(__first, __pivot))
^~~~~
/usr/include/c++/6/bits/stl_algo.h:1899:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1899:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1902:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
while (__comp(__pivot, __last))
^~~~~
/usr/include/c++/6/bits/stl_algo.h:1902:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1902:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1906:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::iter_swap(__first, __last);
^~~
In file included from /usr/include/c++/6/bits/stl_algobase.h:71:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/6/bits/predefined_ops.h: In member function 'bool __gnu_cxx::__ops::_Iter_less_iter::operator()(_Iterator1, _Iterator2) const [with _Iterator1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Iterator2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/predefined_ops.h:42:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
operator()(_Iterator1 __it1, _Iterator2 __it2) const
^~~~~~~~
/usr/include/c++/6/bits/predefined_ops.h:42:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/6/bits/stl_algobase.h: In function '_BI2 std::move_backward(_BI1, _BI1, _BI2) [with _BI1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _BI2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_algobase.h:658:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
move_backward(_BI1 __first, _BI1 __last, _BI2 __result)
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:658:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:658:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:670:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__result);
^
/usr/include/c++/6/bits/stl_algobase.h:670:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:670:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Val_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1818:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__unguarded_linear_insert(_RandomAccessIterator __last,
^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algo.h:61:0,
from /usr/include/c++/6/algorithm:62,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/6/bits/stl_heap.h: In function 'void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_heap.h:319:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~~~~~~
/usr/include/c++/6/bits/stl_heap.h:319:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_heap.h: In function 'void std::__pop_heap(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_heap.h:237:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__pop_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~~~~~
/usr/include/c++/6/bits/stl_heap.h:237:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_heap.h:237:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/6/bits/stl_algobase.h: In function 'void std::iter_swap(_ForwardIterator1, _ForwardIterator2) [with _ForwardIterator1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _ForwardIterator2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_algobase.h:120:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
iter_swap(_ForwardIterator1 __a, _ForwardIterator2 __b)
^~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:120:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/6/bits/stl_algobase.h: In function '_BI2 std::__copy_move_backward_a2(_BI1, _BI1, _BI2) [with bool _IsMove = true; _BI1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _BI2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_algobase.h:595:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__copy_move_backward_a2(_BI1 __first, _BI1 __last, _BI2 __result)
^~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:595:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:595:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:71:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/6/bits/predefined_ops.h: In member function 'bool __gnu_cxx::__ops::_Val_less_iter::operator()(_Value&, _Iterator) const [with _Value = double; _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/predefined_ops.h:71:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
operator()(_Value& __val, _Iterator __it) const
^~~~~~~~
In file included from /usr/include/c++/6/bits/stl_algo.h:61:0,
from /usr/include/c++/6/algorithm:62,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:55,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/6/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_heap.h:209:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_heap.h:217:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
if (__comp(__first + __secondChild,
^~
/usr/include/c++/6/bits/stl_heap.h:217:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_heap.h:217:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_val]':
/usr/include/c++/6/bits/stl_heap.h:124:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__push_heap(_RandomAccessIterator __first,
^~~~~~~~~~~
/usr/include/c++/6/bits/stl_heap.h:129:48: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
while (__holeIndex > __topIndex && __comp(__first + __parent, __value))
~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/stl_algobase.h:71:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41:
/usr/include/c++/6/bits/predefined_ops.h: In member function 'bool __gnu_cxx::__ops::_Iter_less_val::operator()(_Iterator, _Value&) const [with _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Value = double]':
/usr/include/c++/6/bits/predefined_ops.h:55:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
operator()(_Iterator __it, _Value& __val) const
^~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
[ 35%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/DecompositionReward.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/DecompositionReward.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.cpp
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 35%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__x.end());
^
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
^~~
In file included from /usr/include/c++/6/map:61:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_map.h:483:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/6/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_map.h:502:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1225:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
^~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:151:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(__first, __last);
^~~~~~~~
In file included from /usr/include/c++/6/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const int&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_tree.h:2193:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<int&&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_tree.h:2193:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:126:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
^~~
In file included from /usr/include/c++/6/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_tree.h:1928:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 36%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__x.end());
^
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
^~~
In file included from /usr/include/c++/6/map:61:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_map.h:502:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1225:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
^~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:151:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(__first, __last);
^~~~~~~~
In file included from /usr/include/c++/6/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<int&&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_tree.h:2193:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Reward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Reward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.cpp:40:
/usr/include/c++/6/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__x.end());
^
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:126:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Reward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Reward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1225:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
^~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Reward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Reward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:151:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(__first, __last);
^~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Reward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Reward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Reward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Reward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:126:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
^~~
In file included from /usr/include/c++/6/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_tree.h:1928:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Reward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Reward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Reward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Reward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Reward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Reward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Reward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Reward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionReward.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
[ 36%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/BinarySubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/BinarySubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.cpp
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 36%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__x.end());
^
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1225:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
^~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:151:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(__first, __last);
^~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:126:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 36%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 36%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/map:61:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_map.h:502:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<int&&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_tree.h:2193:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_tree.h:1928:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 37%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonCpGSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonCpGSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonCpGSubstitutionModel.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__x.end());
^
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1225:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
^~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:151:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(__first, __last);
^~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:126:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 37%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonDistanceSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonDistanceSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonDistanceSubstitutionModel.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__x.end());
^
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1225:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
^~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:151:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(__first, __last);
^~~~~~~~
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:126:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
[ 38%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.cpp
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
[ 38%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonFitnessSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonFitnessSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonFitnessSubstitutionModel.cpp
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 39%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonFrequenciesSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonFrequenciesSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonFrequenciesSubstitutionModel.cpp
[ 39%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/RewardMappingTools.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/RewardMappingTools.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMappingTools.cpp
[ 39%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp
[ 39%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 39%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMappingTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMappingTools.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMappingTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMappingTools.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMappingTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMappingTools.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMappingTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMappingTools.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMappingTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMappingTools.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMappingTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMappingTools.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMappingTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMappingTools.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMappingTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMappingTools.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMappingTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMappingTools.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMappingTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/RewardMappingTools.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Transliterator.h:43,
from /usr/include/Bpp/Seq/GeneticCode/GeneticCode.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonSubstitutionModel.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Transliterator.h:43,
from /usr/include/Bpp/Seq/GeneticCode/GeneticCode.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonSubstitutionModel.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/Transliterator.h:43,
from /usr/include/Bpp/Seq/GeneticCode/GeneticCode.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonSubstitutionModel.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Transliterator.h:43,
from /usr/include/Bpp/Seq/GeneticCode/GeneticCode.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonSubstitutionModel.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/Transliterator.h:43,
from /usr/include/Bpp/Seq/GeneticCode/GeneticCode.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonSubstitutionModel.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/Transliterator.h:43,
from /usr/include/Bpp/Seq/GeneticCode/GeneticCode.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonSubstitutionModel.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
[ 40%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/SubstitutionRegister.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/SubstitutionRegister.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.cpp
[ 40%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractKroneckerCodonSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractKroneckerCodonSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractKroneckerCodonSubstitutionModel.cpp
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 40%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
[ 41%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/CodonDistanceCpGSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/CodonDistanceCpGSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistanceCpGSubstitutionModel.cpp
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
[ 41%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/WeightedSubstitutionCount.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/WeightedSubstitutionCount.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.cpp
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/Mapping.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 41%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__x.end());
^
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1225:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
^~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:151:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(__first, __last);
^~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:126:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/SubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 41%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.cpp
[ 41%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/AbstractBiblioMixedSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/AbstractBiblioMixedSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractBiblioMixedSubstitutionModel.cpp
[ 42%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/CodonDistanceSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/CodonDistanceSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistanceSubstitutionModel.cpp
[ 43%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/AbstractBiblioSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/AbstractBiblioSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractBiblioSubstitutionModel.cpp
[ 43%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp
[ 43%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp
[ 43%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/CodonRateFrequenciesSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/CodonRateFrequenciesSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonRateFrequenciesSubstitutionModel.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp:40:
/usr/include/c++/6/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__x.end());
^
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
^~~
[ 44%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1225:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
^~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:151:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(__first, __last);
^~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:126:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 44%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/CodonRateSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/CodonRateSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonRateSubstitutionModel.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__x.end());
^
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1225:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
^~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:151:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(__first, __last);
^~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:126:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 44%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp
[ 44%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__x.end());
^
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1225:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
^~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:151:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(__first, __last);
^~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:126:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
[ 44%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/GY94.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/GY94.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/GY94.cpp
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 45%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/KCM.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/KCM.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/KCM.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__x.end());
^
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
^~~
In file included from /usr/include/c++/6/map:61:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_map.h:483:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/6/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_map.h:502:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1225:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
^~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:151:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(__first, __last);
^~~~~~~~
In file included from /usr/include/c++/6/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const int&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_tree.h:2193:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<int&&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_tree.h:2193:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:126:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
^~~
In file included from /usr/include/c++/6/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_tree.h:1928:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 45%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/BinarySubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/BinarySubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__x.end());
^
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
^~~
In file included from /usr/include/c++/6/map:61:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_map.h:502:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1225:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
^~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:151:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(__first, __last);
^~~~~~~~
In file included from /usr/include/c++/6/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<int&&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_tree.h:2193:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:126:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
^~~
In file included from /usr/include/c++/6/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_tree.h:1928:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
[ 46%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonCpGSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonCpGSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonCpGSubstitutionModel.cpp
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 46%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceFrequenciesSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceFrequenciesSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceFrequenciesSubstitutionModel.cpp
[ 46%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceSubstitutionModel.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/map:61:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_map.h:502:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<int&&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_tree.h:2193:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_tree.h:1928:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/BinarySubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 46%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonDistanceSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonDistanceSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonDistanceSubstitutionModel.cpp
[ 47%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/MG94.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/MG94.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/MG94.cpp
[ 47%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonFitnessSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonFitnessSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonFitnessSubstitutionModel.cpp
[ 48%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonFrequenciesSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonFrequenciesSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonFrequenciesSubstitutionModel.cpp
[ 48%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/SENCA.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/SENCA.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/SENCA.cpp
[ 48%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.cpp
[ 48%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/TripletSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/TripletSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/TripletSubstitutionModel.cpp
[ 48%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.cpp
In file included from /usr/include/c++/6/map:61:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /usr/include/Bpp/Seq/Alphabet/CodonAlphabet.h:43,
from /usr/include/Bpp/Seq/GeneticCode/GeneticCode.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonSubstitutionModel.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonFitnessSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/SENCA.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/SENCA.cpp:41:
/usr/include/c++/6/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_map.h:483:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
In file included from /usr/include/c++/6/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /usr/include/Bpp/Seq/Alphabet/CodonAlphabet.h:43,
from /usr/include/Bpp/Seq/GeneticCode/GeneticCode.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonSubstitutionModel.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonFitnessSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/SENCA.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/SENCA.cpp:41:
/usr/include/c++/6/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const int&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_tree.h:2193:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_tree.h:1928:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 48%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractKroneckerCodonSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractKroneckerCodonSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractKroneckerCodonSubstitutionModel.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Transliterator.h:43,
from /usr/include/Bpp/Seq/GeneticCode/GeneticCode.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonSubstitutionModel.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Transliterator.h:43,
from /usr/include/Bpp/Seq/GeneticCode/GeneticCode.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonSubstitutionModel.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/Transliterator.h:43,
from /usr/include/Bpp/Seq/GeneticCode/GeneticCode.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonSubstitutionModel.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Transliterator.h:43,
from /usr/include/Bpp/Seq/GeneticCode/GeneticCode.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonSubstitutionModel.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/Transliterator.h:43,
from /usr/include/Bpp/Seq/GeneticCode/GeneticCode.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonSubstitutionModel.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/Transliterator.h:43,
from /usr/include/Bpp/Seq/GeneticCode/GeneticCode.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonSubstitutionModel.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
[ 48%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YN98.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YN98.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YN98.cpp
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../WordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/TripletSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/TripletSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../WordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/TripletSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/TripletSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../WordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/TripletSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/TripletSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 49%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/CodonDistanceCpGSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/CodonDistanceCpGSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistanceCpGSubstitutionModel.cpp
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 50%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M1.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M1.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M1.cpp
[ 50%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M10.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M10.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M10.cpp
[ 50%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M2.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M2.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M2.cpp
[ 50%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.cpp
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M1.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M1.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M1.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M1.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M1.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M1.cpp:39:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 50%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.cpp
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M10.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M10.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M10.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M10.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M10.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M10.cpp:39:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 51%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M3.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M3.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M3.cpp
[ 51%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M7.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M7.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M7.cpp
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M2.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M2.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M2.cpp:39:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 52%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/CodonDistanceSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/CodonDistanceSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonDistanceSubstitutionModel.cpp
[ 52%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M8.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M8.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M8.cpp
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M3.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M3.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M3.cpp:39:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 52%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/CodonRateFrequenciesSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/CodonRateFrequenciesSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonRateFrequenciesSubstitutionModel.cpp
[ 52%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M9.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M9.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M9.cpp
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M7.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M7.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M7.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M7.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M7.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M7.cpp:39:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 52%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/CodonRateSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/CodonRateSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonRateSubstitutionModel.cpp
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M8.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M8.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M8.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M8.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M8.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M8.cpp:39:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 53%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp
[ 53%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp
[ 53%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/GY94.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/GY94.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/GY94.cpp
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M9.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M9.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M9.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M9.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M9.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M9.cpp:39:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 54%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/KCM.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/KCM.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/KCM.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp:41:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp:41:
/usr/include/c++/6/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__x.end());
^
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp:41:
/usr/include/c++/6/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1225:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
^~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp:41:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp:41:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:151:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(__first, __last);
^~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp:41:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp:41:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp:41:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:126:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp:41:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp:41:
/usr/include/c++/6/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp:41:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp:41:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp:41:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 54%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceFrequenciesSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceFrequenciesSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceFrequenciesSubstitutionModel.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:40:
/usr/include/c++/6/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__x.end());
^
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1225:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
^~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:151:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(__first, __last);
^~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:126:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 54%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceSubstitutionModel.cpp
[ 54%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp
[ 54%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp
[ 54%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/MG94.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/MG94.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/MG94.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp:41:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp:41:
/usr/include/c++/6/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__x.end());
^
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp:41:
/usr/include/c++/6/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1225:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
^~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp:41:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp:41:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:151:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(__first, __last);
^~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp:41:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp:41:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp:41:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:126:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/ProteinFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp:39:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp:41:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp:41:
/usr/include/c++/6/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp:41:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
[ 55%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/SENCA.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/SENCA.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/SENCA.cpp
In file included from /usr/include/c++/6/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/ProteinFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp:39:
/usr/include/c++/6/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__x.end());
^
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/ProteinFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
[ 55%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/TripletSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/TripletSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/TripletSubstitutionModel.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/ProteinFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp:39:
/usr/include/c++/6/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1225:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
^~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/ProteinFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/ProteinFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp:39:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:151:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(__first, __last);
^~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/ProteinFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/ProteinFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp:39:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/ProteinFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/ProteinFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp:39:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:126:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/ProteinFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/ProteinFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp:39:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/ProteinFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp:39:
/usr/include/c++/6/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/ProteinFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/ProteinFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/ProteinFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/ProteinFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/ProteinFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp:39:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 56%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp
[ 56%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/FromMixtureSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/FromMixtureSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FromMixtureSubstitutionModel.cpp
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../WordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/TripletSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/TripletSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../WordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/TripletSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/TripletSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractWordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../WordSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/TripletSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/TripletSubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 56%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YN98.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YN98.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YN98.cpp
In file included from /usr/include/c++/6/map:61:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /usr/include/Bpp/Seq/Alphabet/CodonAlphabet.h:43,
from /usr/include/Bpp/Seq/GeneticCode/GeneticCode.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonSubstitutionModel.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonFitnessSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/SENCA.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/SENCA.cpp:41:
/usr/include/c++/6/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_map.h:483:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
In file included from /usr/include/c++/6/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /usr/include/Bpp/Seq/Alphabet/CodonAlphabet.h:43,
from /usr/include/Bpp/Seq/GeneticCode/GeneticCode.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/CodonSubstitutionModel.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/AbstractCodonFitnessSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/SENCA.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/SENCA.cpp:41:
/usr/include/c++/6/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const int&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_tree.h:2193:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_tree.h:1928:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
[ 57%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YNGP_M1.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YNGP_M1.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M1.cpp
In file included from /usr/include/c++/6/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp:40:
/usr/include/c++/6/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__x.end());
^
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1225:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
^~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:151:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(__first, __last);
^~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:126:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 57%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/KroneckerWordSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/KroneckerWordSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/KroneckerWordSubstitutionModel.cpp
[ 58%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp
[ 58%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YNGP_M10.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YNGP_M10.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M10.cpp
[ 58%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/MixedSubstitutionModelSet.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/MixedSubstitutionModelSet.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModelSet.cpp
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M1.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M1.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M1.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M1.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M1.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M1.cpp:39:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 58%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YNGP_M2.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YNGP_M2.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M2.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__x.end());
^
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1225:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
^~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:151:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(__first, __last);
^~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:126:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 58%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/MixtureOfASubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/MixtureOfASubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixtureOfASubstitutionModel.cpp
[ 58%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/MixtureOfSubstitutionModels.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/MixtureOfSubstitutionModels.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixtureOfSubstitutionModels.cpp
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M10.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M10.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M10.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M10.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M10.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M10.cpp:39:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 58%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YNGP_M3.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YNGP_M3.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M3.cpp
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M2.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M2.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M2.cpp:39:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 59%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/F84.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/F84.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.cpp
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixtureOfASubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixtureOfASubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixtureOfASubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixtureOfASubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixtureOfASubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixtureOfASubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 60%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YNGP_M7.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YNGP_M7.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M7.cpp
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixtureOfSubstitutionModels.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixtureOfSubstitutionModels.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixtureOfSubstitutionModels.cpp:39:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 60%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/GTR.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/GTR.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M3.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
In file included from /usr/include/c++/6/map:61:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.cpp:40:
/usr/include/c++/6/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_map.h:502:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.cpp:40:
/usr/include/c++/6/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<int&&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_tree.h:2193:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.cpp:40:
/usr/include/c++/6/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_tree.h:1928:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M3.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M3.cpp:39:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 60%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/HKY85.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/HKY85.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.cpp
[ 60%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YNGP_M8.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YNGP_M8.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M8.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/map:61:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.cpp:40:
/usr/include/c++/6/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_map.h:502:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.cpp:40:
/usr/include/c++/6/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<int&&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_tree.h:2193:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.cpp:40:
/usr/include/c++/6/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_tree.h:1928:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M7.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M7.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M7.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M7.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M7.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M7.cpp:39:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 61%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/JCnuc.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/JCnuc.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/JCnuc.cpp
[ 61%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/K80.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/K80.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/map:61:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.cpp:40:
/usr/include/c++/6/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_map.h:502:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.cpp:40:
/usr/include/c++/6/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<int&&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_tree.h:2193:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.cpp:40:
/usr/include/c++/6/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_tree.h:1928:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 61%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YNGP_M9.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YNGP_M9.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M9.cpp
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M8.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M8.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/JCnuc.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/JCnuc.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M8.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M8.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M8.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M8.cpp:39:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/JCnuc.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/JCnuc.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/JCnuc.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/JCnuc.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/JCnuc.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/JCnuc.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/JCnuc.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/JCnuc.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/JCnuc.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/JCnuc.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/JCnuc.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/JCnuc.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
[ 61%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/L95.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/L95.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.cpp
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/JCnuc.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/JCnuc.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/JCnuc.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/JCnuc.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/JCnuc.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/JCnuc.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.cpp:40:
/usr/include/c++/6/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__x.end());
^
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1225:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
^~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
[ 62%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp.o
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:151:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(__first, __last);
^~~~~~~~
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:126:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 62%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/map:61:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.cpp:40:
/usr/include/c++/6/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_map.h:502:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.cpp:40:
/usr/include/c++/6/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<int&&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_tree.h:2193:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.cpp:40:
/usr/include/c++/6/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_tree.h:1928:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp:41:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp:41:
/usr/include/c++/6/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__x.end());
^
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
^~~
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp:41:
/usr/include/c++/6/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1225:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
^~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp:41:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp:41:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:151:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(__first, __last);
^~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp:41:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp:41:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp:41:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:126:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M9.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M9.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp:41:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp:41:
/usr/include/c++/6/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
[ 62%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/RN95.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/RN95.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.cpp
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp:41:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp:41:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp:41:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M9.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M9.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
[ 63%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/RN95s.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/RN95s.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.cpp
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M9.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Codon/YNGP_M9.cpp:39:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:40:
/usr/include/c++/6/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__x.end());
^
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1225:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
^~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:151:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(__first, __last);
^~~~~~~~
[ 63%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:126:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 63%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/SSR.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/SSR.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/map:61:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.cpp:40:
/usr/include/c++/6/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_map.h:502:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/map:61:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.cpp:40:
/usr/include/c++/6/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_map.h:502:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
In file included from /usr/include/c++/6/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.cpp:40:
/usr/include/c++/6/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<int&&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_tree.h:2193:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/ProteinFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp:39:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/ProteinFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp:39:
/usr/include/c++/6/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__x.end());
^
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
^~~
In file included from /usr/include/c++/6/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.cpp:40:
/usr/include/c++/6/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_tree.h:1928:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.cpp:40:
/usr/include/c++/6/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<int&&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_tree.h:2193:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.cpp:40:
/usr/include/c++/6/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_tree.h:1928:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/ProteinFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/ProteinFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp:39:
/usr/include/c++/6/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1225:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
^~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/ProteinFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/ProteinFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp:39:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:151:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(__first, __last);
^~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/ProteinFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/ProteinFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp:39:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/ProteinFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/ProteinFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp:39:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:126:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/ProteinFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/ProteinFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp:39:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/ProteinFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp:39:
/usr/include/c++/6/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
[ 63%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/ProteinFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/ProteinFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/ProteinFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/ProteinFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/ProteinFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp:39:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 63%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/T92.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/T92.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/map:61:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.cpp:40:
/usr/include/c++/6/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_map.h:502:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
[ 64%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/TN93.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/TN93.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp
In file included from /usr/include/c++/6/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.cpp:40:
/usr/include/c++/6/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<int&&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_tree.h:2193:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.cpp:40:
/usr/include/c++/6/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_tree.h:1928:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 65%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp:41:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp:41:
/usr/include/c++/6/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__x.end());
^
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp:41:
/usr/include/c++/6/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1225:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
^~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp:41:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp:41:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:151:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(__first, __last);
^~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp:41:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp:41:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp:41:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:126:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp:41:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp:41:
/usr/include/c++/6/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp:41:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
[ 65%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/YpR.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/YpR.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/map:61:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.cpp:40:
/usr/include/c++/6/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_map.h:502:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.cpp:40:
/usr/include/c++/6/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<int&&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_tree.h:2193:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.cpp:40:
/usr/include/c++/6/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_tree.h:1928:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp:40:
/usr/include/c++/6/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__x.end());
^
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
^~~
[ 65%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/FromMixtureSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/FromMixtureSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FromMixtureSubstitutionModel.cpp
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1225:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
^~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:151:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(__first, __last);
^~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:126:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
^~~
In file included from /usr/include/c++/6/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:40:
/usr/include/c++/6/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__x.end());
^
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/map:61:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:40:
/usr/include/c++/6/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_map.h:502:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1225:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
^~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:151:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(__first, __last);
^~~~~~~~
[ 65%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/gBGC.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/gBGC.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.cpp
In file included from /usr/include/c++/6/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:40:
/usr/include/c++/6/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<int&&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_tree.h:2193:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:126:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
^~~
In file included from /usr/include/c++/6/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:40:
/usr/include/c++/6/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_tree.h:1928:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 65%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/KroneckerWordSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/KroneckerWordSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/KroneckerWordSubstitutionModel.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.cpp:39:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.cpp:39:
/usr/include/c++/6/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__x.end());
^
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.cpp:39:
/usr/include/c++/6/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1225:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
^~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.cpp:39:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:151:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(__first, __last);
^~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.cpp:39:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.cpp:39:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:126:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
^~~
[ 65%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/OneChangeTransitionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/OneChangeTransitionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeTransitionModel.cpp
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.cpp:39:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.cpp:39:
/usr/include/c++/6/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.cpp:39:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 66%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.cpp:39:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.cpp:39:
/usr/include/c++/6/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__x.end());
^
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.cpp:39:
/usr/include/c++/6/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1225:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
^~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.cpp:39:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:151:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(__first, __last);
^~~~~~~~
[ 67%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/Coala.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/Coala.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.cpp
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.cpp:39:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.cpp:39:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:126:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.cpp:39:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.cpp:39:
/usr/include/c++/6/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.cpp:39:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 67%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/MixedSubstitutionModelSet.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/MixedSubstitutionModelSet.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModelSet.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeTransitionModel.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeTransitionModel.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeTransitionModel.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeTransitionModel.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeTransitionModel.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeTransitionModel.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeTransitionModel.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeTransitionModel.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeTransitionModel.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeTransitionModel.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 67%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/CoalaCore.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/CoalaCore.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__x.end());
^
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1225:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
^~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:151:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(__first, __last);
^~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:126:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 67%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/DSO78.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/DSO78.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.cpp:41:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.cpp:41:
/usr/include/c++/6/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__x.end());
^
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.cpp:41:
/usr/include/c++/6/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1225:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
^~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.cpp:41:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.cpp:41:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:151:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(__first, __last);
^~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.cpp:41:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.cpp:41:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.cpp:41:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:126:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.cpp:41:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.cpp:41:
/usr/include/c++/6/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.cpp:41:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.cpp:41:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.cpp:41:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 67%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/MixtureOfASubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/MixtureOfASubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixtureOfASubstitutionModel.cpp
[ 68%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/JCprot.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/JCprot.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:41:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/map:61:0,
from /usr/include/Bpp/Numeric/AbstractParametrizable.h:47,
from /usr/include/Bpp/Numeric/Function/Functions.h:45,
from /usr/include/Bpp/Numeric/NumTools.h:43,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:48,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:41:
/usr/include/c++/6/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_map.h:483:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
In file included from /usr/include/c++/6/vector:69:0,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:41:
/usr/include/c++/6/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__x.end());
^
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/map:60:0,
from /usr/include/Bpp/Numeric/AbstractParametrizable.h:47,
from /usr/include/Bpp/Numeric/Function/Functions.h:45,
from /usr/include/Bpp/Numeric/NumTools.h:43,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:48,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:41:
/usr/include/c++/6/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const int&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_tree.h:2193:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:41:
/usr/include/c++/6/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1225:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
^~~
In file included from /usr/include/c++/6/vector:60:0,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:41:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:41:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:151:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(__first, __last);
^~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
In file included from /usr/include/c++/6/map:60:0,
from /usr/include/Bpp/Numeric/AbstractParametrizable.h:47,
from /usr/include/Bpp/Numeric/Function/Functions.h:45,
from /usr/include/Bpp/Numeric/NumTools.h:43,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:48,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:41:
/usr/include/c++/6/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_tree.h:1928:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/vector:60,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:41:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:60:0,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:41:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:41:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:126:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/vector:60,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:41:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:41:
/usr/include/c++/6/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:60:0,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:41:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/vector:60:0,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:41:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:60:0,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:41:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/vector:60,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:41:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 68%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/MixtureOfSubstitutionModels.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/MixtureOfSubstitutionModels.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixtureOfSubstitutionModels.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.cpp:40:
/usr/include/c++/6/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__x.end());
^
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1225:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
^~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:151:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(__first, __last);
^~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:126:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 69%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/F84.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/F84.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.cpp:40:
/usr/include/c++/6/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__x.end());
^
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1225:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
^~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:151:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(__first, __last);
^~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:126:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixtureOfASubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixtureOfASubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
[ 69%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/JTT92.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/JTT92.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.cpp
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixtureOfASubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixtureOfASubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixtureOfASubstitutionModel.h:42,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixtureOfASubstitutionModel.cpp:39:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 69%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LG08.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LG08.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.cpp
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixtureOfSubstitutionModels.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixtureOfSubstitutionModels.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/MixtureOfSubstitutionModels.cpp:39:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 69%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/GTR.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/GTR.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/map:61:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.cpp:40:
/usr/include/c++/6/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_map.h:502:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.cpp:40:
/usr/include/c++/6/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<int&&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_tree.h:2193:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.cpp:40:
/usr/include/c++/6/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_tree.h:1928:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/F84.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 69%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/map:61:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.cpp:40:
/usr/include/c++/6/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_map.h:502:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.cpp:40:
/usr/include/c++/6/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<int&&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_tree.h:2193:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.cpp:40:
/usr/include/c++/6/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_tree.h:1928:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 69%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/HKY85.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/HKY85.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.cpp:40:
/usr/include/c++/6/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__x.end());
^
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1225:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
^~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:151:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(__first, __last);
^~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:126:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.cpp:40:
/usr/include/c++/6/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__x.end());
^
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1225:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
^~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:151:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(__first, __last);
^~~~~~~~
[ 70%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/JCnuc.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/JCnuc.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/JCnuc.cpp
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:126:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 71%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/map:61:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.cpp:40:
/usr/include/c++/6/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_map.h:502:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.cpp:40:
/usr/include/c++/6/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<int&&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_tree.h:2193:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.cpp:40:
/usr/include/c++/6/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_tree.h:1928:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/HKY85.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/JCnuc.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/JCnuc.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/JCnuc.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/JCnuc.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
[ 71%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/JCnuc.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/JCnuc.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/JCnuc.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/JCnuc.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/JCnuc.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/JCnuc.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/JCnuc.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/JCnuc.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/JCnuc.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/JCnuc.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/JCnuc.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/JCnuc.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/JCnuc.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/JCnuc.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/JCnuc.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/JCnuc.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 71%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/K80.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/K80.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp:39:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp:39:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp:39:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp:39:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 71%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/L95.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/L95.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.cpp:40:
/usr/include/c++/6/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__x.end());
^
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1225:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
^~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:151:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(__first, __last);
^~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:126:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/K80.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 71%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp:39:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp:39:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp:39:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp:39:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 71%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/RN95.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/RN95.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/map:61:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.cpp:40:
/usr/include/c++/6/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_map.h:502:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.cpp:40:
/usr/include/c++/6/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<int&&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_tree.h:2193:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.cpp:40:
/usr/include/c++/6/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_tree.h:1928:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/L95.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 72%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp:39:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp:39:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp:39:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp:39:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 73%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/RN95s.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/RN95s.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp:39:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp:39:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp:39:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp:39:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/map:61:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.cpp:40:
/usr/include/c++/6/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_map.h:502:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.cpp:40:
/usr/include/c++/6/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<int&&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_tree.h:2193:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.cpp:40:
/usr/include/c++/6/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_tree.h:1928:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 73%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp.o
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 73%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp:39:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp:39:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp:39:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp:39:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/map:61:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.cpp:40:
/usr/include/c++/6/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_map.h:502:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
[ 73%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/SSR.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/SSR.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.cpp
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.cpp:40:
/usr/include/c++/6/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<int&&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_tree.h:2193:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.cpp:40:
/usr/include/c++/6/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_tree.h:1928:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/RN95s.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 73%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp:39:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp:39:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp:39:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp:39:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp:39:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
[ 73%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/T92.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/T92.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.cpp
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp:39:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/map:61:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.cpp:40:
/usr/include/c++/6/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_map.h:502:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp:39:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.cpp:40:
/usr/include/c++/6/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<int&&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_tree.h:2193:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.cpp:40:
/usr/include/c++/6/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_tree.h:1928:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp:39:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/SSR.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 74%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/WAG01.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/WAG01.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.cpp
[ 75%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/TN93.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/TN93.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__x.end());
^
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1225:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
^~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:151:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(__first, __last);
^~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:126:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 75%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/YpR.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/YpR.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/map:61:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.cpp:40:
/usr/include/c++/6/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_map.h:502:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.cpp:40:
/usr/include/c++/6/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<int&&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_tree.h:2193:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.cpp:40:
/usr/include/c++/6/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_tree.h:1928:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/T92.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 75%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/RE08.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/RE08.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RE08.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:40:
/usr/include/c++/6/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__x.end());
^
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
^~~
In file included from /usr/include/c++/6/map:61:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:40:
/usr/include/c++/6/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_map.h:502:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1225:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
^~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:151:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(__first, __last);
^~~~~~~~
In file included from /usr/include/c++/6/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:40:
/usr/include/c++/6/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<int&&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_tree.h:2193:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:126:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
^~~
In file included from /usr/include/c++/6/map:60:0,
from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:40:
/usr/include/c++/6/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_tree.h:1928:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 75%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/gBGC.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/gBGC.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.cpp:40:
/usr/include/c++/6/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__x.end());
^
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
^~~
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.cpp:39:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.cpp:39:
/usr/include/c++/6/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__x.end());
^
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
^~~
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1225:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
^~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:151:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(__first, __last);
^~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:126:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.cpp:39:
/usr/include/c++/6/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1225:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
^~~
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.cpp:39:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:151:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(__first, __last);
^~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.cpp:39:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.cpp:39:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:126:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
^~~
[ 75%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/OneChangeTransitionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/OneChangeTransitionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeTransitionModel.cpp
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.cpp:39:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.cpp:39:
/usr/include/c++/6/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../AbstractSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/YpR.cpp:39:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 75%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/StateMap.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/StateMap.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/StateMap.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RE08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RE08.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RE08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RE08.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RE08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RE08.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RE08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RE08.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RE08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RE08.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RE08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RE08.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RE08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RE08.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RE08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RE08.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RE08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RE08.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RE08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RE08.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 76%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/Coala.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/Coala.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.cpp:39:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.cpp:39:
/usr/include/c++/6/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__x.end());
^
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.cpp:39:
/usr/include/c++/6/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1225:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
^~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.cpp:39:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:151:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(__first, __last);
^~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.cpp:39:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.cpp:39:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:126:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.cpp:39:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.cpp:39:
/usr/include/c++/6/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/gBGC.cpp:39:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeTransitionModel.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeTransitionModel.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeTransitionModel.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeTransitionModel.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeTransitionModel.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeTransitionModel.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeTransitionModel.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeTransitionModel.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeTransitionModel.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeTransitionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/OneChangeTransitionModel.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 77%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/SubstitutionModelSet.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/SubstitutionModelSet.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModelSet.cpp
[ 77%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/CoalaCore.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/CoalaCore.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp
[ 77%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/SubstitutionModelSetTools.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/SubstitutionModelSetTools.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModelSetTools.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.cpp:41:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.cpp:41:
/usr/include/c++/6/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__x.end());
^
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.cpp:41:
/usr/include/c++/6/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1225:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
^~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.cpp:41:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.cpp:41:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:151:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(__first, __last);
^~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.cpp:41:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.cpp:41:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.cpp:41:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:126:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.cpp:41:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.cpp:41:
/usr/include/c++/6/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.cpp:41:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.cpp:41:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/Coala.cpp:41:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 77%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/WordSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/WordSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/WordSubstitutionModel.cpp
[ 77%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/DSO78.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/DSO78.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:41:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/map:61:0,
from /usr/include/Bpp/Numeric/AbstractParametrizable.h:47,
from /usr/include/Bpp/Numeric/Function/Functions.h:45,
from /usr/include/Bpp/Numeric/NumTools.h:43,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:48,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:41:
/usr/include/c++/6/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_map.h:483:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
In file included from /usr/include/c++/6/vector:69:0,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:41:
/usr/include/c++/6/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__x.end());
^
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/map:60:0,
from /usr/include/Bpp/Numeric/AbstractParametrizable.h:47,
from /usr/include/Bpp/Numeric/Function/Functions.h:45,
from /usr/include/Bpp/Numeric/NumTools.h:43,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:48,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:41:
/usr/include/c++/6/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const int&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_tree.h:2193:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:41:
/usr/include/c++/6/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1225:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
^~~
In file included from /usr/include/c++/6/vector:60:0,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:41:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:41:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:151:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(__first, __last);
^~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
In file included from /usr/include/c++/6/map:60:0,
from /usr/include/Bpp/Numeric/AbstractParametrizable.h:47,
from /usr/include/Bpp/Numeric/Function/Functions.h:45,
from /usr/include/Bpp/Numeric/NumTools.h:43,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:48,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:41:
/usr/include/c++/6/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_tree.h:1928:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/vector:60,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:41:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:60:0,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:41:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:41:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:126:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/vector:60,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:41:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:41:
/usr/include/c++/6/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:60:0,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:41:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/vector:60:0,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:41:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:41:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:60:0,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:41:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/vector:60,
from /usr/include/Bpp/Numeric/Matrix/Matrix.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:41:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 77%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/NNITopologySearch.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/NNITopologySearch.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.cpp
[ 78%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/JCprot.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/JCprot.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.cpp
[ 78%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/JTT92.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/JTT92.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.cpp:40:
/usr/include/c++/6/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__x.end());
^
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
^~~
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.cpp:40:
/usr/include/c++/6/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__x.end());
^
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1225:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
^~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:151:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(__first, __last);
^~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1225:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
^~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:151:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(__first, __last);
^~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:126:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:126:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/DSO78.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JCprot.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 79%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Node.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Node.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Node.cpp
[ 79%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/OptimizationTools.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/OptimizationTools.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/OptimizationTools.cpp
/<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.cpp: In member function 'void bpp::NNITopologySearch::searchPhyML()':
/<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.cpp:267:85: note: parameter passing for argument of type 'std::vector<double>::const_iterator {aka __gnu_cxx::__normal_iterator<const double*, std::vector<double> >}' will change in GCC 7.1
improvement.erase(improvement.begin() + static_cast<ptrdiff_t>(j - 1));
^
/<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.cpp:290:88: note: parameter passing for argument of type 'std::vector<double>::const_iterator {aka __gnu_cxx::__normal_iterator<const double*, std::vector<double> >}' will change in GCC 7.1
improvement.insert(improvement.begin() + static_cast<ptrdiff_t>(pos), diff);
^
/<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.cpp:296:56: note: parameter passing for argument of type 'std::vector<double>::const_iterator {aka __gnu_cxx::__normal_iterator<const double*, std::vector<double> >}' will change in GCC 7.1
improvement.insert(improvement.end(), diff);
^
/<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.cpp:352:96: note: parameter passing for argument of type 'std::vector<double>::const_iterator {aka __gnu_cxx::__normal_iterator<const double*, std::vector<double> >}' will change in GCC 7.1
improvement.erase(improvement.begin() + static_cast<ptrdiff_t>(n), improvement.end());
^
/<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.cpp:352:96: note: parameter passing for argument of type 'std::vector<double>::const_iterator {aka __gnu_cxx::__normal_iterator<const double*, std::vector<double> >}' will change in GCC 7.1
/<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.cpp:352:96: note: parameter passing for argument of type 'std::vector<double>::const_iterator {aka __gnu_cxx::__normal_iterator<const double*, std::vector<double> >}' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(std::vector<_Tp, _Alloc>::const_iterator, std::vector<_Tp, _Alloc>::const_iterator) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:1174:7: note: parameter passing for argument of type 'std::vector<double>::const_iterator {aka __gnu_cxx::__normal_iterator<const double*, std::vector<double> >}' will change in GCC 7.1
erase(const_iterator __first, const_iterator __last)
^~~~~
/usr/include/c++/6/bits/stl_vector.h:1174:7: note: parameter passing for argument of type 'std::vector<double>::const_iterator {aka __gnu_cxx::__normal_iterator<const double*, std::vector<double> >}' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1178:71: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
^
/usr/include/c++/6/bits/stl_vector.h:1178:71: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1178:71: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(std::vector<_Tp, _Alloc>::const_iterator) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:1147:7: note: parameter passing for argument of type 'std::vector<double>::const_iterator {aka __gnu_cxx::__normal_iterator<const double*, std::vector<double> >}' will change in GCC 7.1
erase(const_iterator __position)
^~~~~
/usr/include/c++/6/bits/stl_vector.h:1148:58: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
{ return _M_erase(begin() + (__position - cbegin())); }
^
In file included from /usr/include/c++/6/vector:69:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.cpp:40:
/usr/include/c++/6/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(std::vector<_Tp, _Alloc>::const_iterator, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:107:5: note: parameter passing for argument of type 'std::vector<double>::const_iterator {aka __gnu_cxx::__normal_iterator<const double*, std::vector<double> >}' will change in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:128:8: note: parameter passing for argument of type 'const __gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
_M_insert_aux(__pos, std::move(__x_copy));
^~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:131:6: note: parameter passing for argument of type 'const __gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
_M_insert_aux(__pos, __x);
^~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::iterator) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:153:5: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' will change in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:153:5: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.cpp:40:
/usr/include/c++/6/bits/vector.tcc:159:6: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
_GLIBCXX_MOVE3(__last, end(), __first);
^
/usr/include/c++/6/bits/vector.tcc:159:6: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:159:6: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:69:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.cpp:40:
/usr/include/c++/6/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:141:5: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' will change in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.cpp:40:
/usr/include/c++/6/bits/vector.tcc:145:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
_GLIBCXX_MOVE3(__position + 1, end(), __position);
^
/usr/include/c++/6/bits/vector.tcc:145:2: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:145:2: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:69:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.cpp:40:
/usr/include/c++/6/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_insert_aux(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:321:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' will change in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_insert_aux(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:321:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::move(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_algobase.h:479:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
move(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:479:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:479:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:488:47: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__miter_base(__last), __result);
^
/usr/include/c++/6/bits/stl_algobase.h:488:47: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:488:47: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double>]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = true; _II = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 79%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LG08.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LG08.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.cpp:40:
/usr/include/c++/6/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__x.end());
^
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1225:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
^~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:151:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(__first, __last);
^~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:126:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/JTT92.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 79%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.cpp.o
[ 79%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Parsimony/DRTreeParsimonyData.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.cpp
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Parsimony/DRTreeParsimonyData.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Parsimony/DRTreeParsimonyData.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.cpp:40:
/usr/include/c++/6/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__x.end());
^
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Parsimony/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Parsimony/../TreeTemplate.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Parsimony/TreeParsimonyScore.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/ClockTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/OptimizationTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/OptimizationTools.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1225:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
^~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:151:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(__first, __last);
^~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Parsimony/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Parsimony/../TreeTemplate.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Parsimony/TreeParsimonyScore.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Parsimony/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Parsimony/../TreeTemplate.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Parsimony/TreeParsimonyScore.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:126:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/ClockTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/OptimizationTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/OptimizationTools.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG08.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 79%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/ClockTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/OptimizationTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/OptimizationTools.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
[ 80%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Parsimony/DRTreeParsimonyScore.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Parsimony/DRTreeParsimonyScore.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Parsimony/DRTreeParsimonyScore.cpp
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/ClockTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/OptimizationTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/OptimizationTools.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/ClockTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/OptimizationTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/OptimizationTools.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/ClockTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/OptimizationTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/OptimizationTools.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/ClockTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/OptimizationTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/OptimizationTools.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/ClockTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/OptimizationTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/OptimizationTools.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/ClockTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/OptimizationTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/OptimizationTools.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/ClockTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/OptimizationTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/OptimizationTools.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 81%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp
[ 81%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp
[ 81%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/PatternTools.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/PatternTools.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/PatternTools.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp:39:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp:39:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp:39:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp:39:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp:39:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp:39:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp:39:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
[ 81%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/PhyloStatistics.cpp.o
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/PhyloStatistics.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/PhyloStatistics.cpp
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp:39:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 82%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Simulation/MutationProcess.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Simulation/MutationProcess.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/MutationProcess.cpp
[ 82%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp:39:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/PhyloStatistics.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/PhyloStatistics.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp:39:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/PhyloStatistics.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/PhyloStatistics.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp:39:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/PhyloStatistics.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/PhyloStatistics.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp:39:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 82%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp
[ 83%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/MutationProcess.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/MutationProcess.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/MutationProcess.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/MutationProcess.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/MutationProcess.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/MutationProcess.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/MutationProcess.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/MutationProcess.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/MutationProcess.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/MutationProcess.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/MutationProcess.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/MutationProcess.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/MutationProcess.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/MutationProcess.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/MutationProcess.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/MutationProcess.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/MutationProcess.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/MutationProcess.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/MutationProcess.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/MutationProcess.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 83%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp:39:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp:39:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp:39:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp:39:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 83%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp:39:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp:39:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp:39:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp:39:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp:39:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
[ 83%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp:39:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp:39:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp:39:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Site.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/SiteSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/DetailedSiteSimulator.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp:42:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Site.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/SiteSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/DetailedSiteSimulator.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp:42:
/usr/include/c++/6/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__x.end());
^
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
^~~
[ 84%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/WAG01.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/WAG01.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.cpp
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Site.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/SiteSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/DetailedSiteSimulator.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp:42:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Site.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/SiteSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/DetailedSiteSimulator.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp:42:
/usr/include/c++/6/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1225:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
^~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Site.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/SiteSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/DetailedSiteSimulator.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp:42:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Site.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/SiteSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/DetailedSiteSimulator.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp:42:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:151:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(__first, __last);
^~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Site.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/SiteSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/DetailedSiteSimulator.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp:42:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Site.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/SiteSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/DetailedSiteSimulator.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp:42:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Site.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/SiteSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/DetailedSiteSimulator.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp:42:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Site.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/SiteSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/DetailedSiteSimulator.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp:42:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:126:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Site.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/SiteSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/DetailedSiteSimulator.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp:42:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Site.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/SiteSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/DetailedSiteSimulator.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp:42:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Site.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/SiteSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/DetailedSiteSimulator.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp:42:
/usr/include/c++/6/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Site.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/SiteSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/DetailedSiteSimulator.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp:42:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Site.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/SiteSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/DetailedSiteSimulator.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp:42:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Site.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/SiteSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/DetailedSiteSimulator.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp:42:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Site.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/SiteSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/DetailedSiteSimulator.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp:42:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Site.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/SiteSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/DetailedSiteSimulator.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp:42:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 84%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Simulation/SequenceSimulationTools.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Simulation/SequenceSimulationTools.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/SequenceSimulationTools.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__x.end());
^
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
^~~
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp:39:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1225:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
^~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:151:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(__first, __last);
^~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:126:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
^~~
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp:39:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp:39:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp:39:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp:39:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp:39:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 84%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/RE08.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/RE08.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RE08.cpp
[ 84%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/StateMap.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/StateMap.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/StateMap.cpp
[ 84%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/SitePatterns.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/SitePatterns.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/SitePatterns.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.cpp:40:
/usr/include/c++/6/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__x.end());
^
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1225:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
^~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:151:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(__first, __last);
^~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:126:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Protein/WAG01.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 84%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/SubstitutionModelSet.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/SubstitutionModelSet.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModelSet.cpp
[ 85%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/SubstitutionModelSetTools.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/SubstitutionModelSetTools.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModelSetTools.cpp
[ 86%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/TreeExceptions.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/TreeExceptions.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RE08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RE08.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RE08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RE08.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RE08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RE08.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RE08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RE08.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RE08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RE08.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RE08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RE08.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RE08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RE08.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RE08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RE08.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RE08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RE08.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RE08.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/RE08.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 86%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/WordSubstitutionModel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/WordSubstitutionModel.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/WordSubstitutionModel.cpp
[ 86%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/TreeTemplateTools.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/TreeTemplateTools.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.cpp
[ 86%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/TreeTools.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/TreeTools.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.cpp
[ 86%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/NNITopologySearch.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/NNITopologySearch.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.cpp
[ 87%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Node.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Node.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Node.cpp
In file included from /usr/include/c++/6/map:61:0,
from /usr/include/Bpp/Utils/MapTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Node.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.cpp:42:
/usr/include/c++/6/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = const bpp::Node*; _Tp = double; _Compare = std::less<const bpp::Node*>; _Alloc = std::allocator<std::pair<const bpp::Node* const, double> >]':
/usr/include/c++/6/bits/stl_map.h:502:4: note: parameter passing for argument of type 'std::_Rb_tree<const bpp::Node*, std::pair<const bpp::Node* const, double>, std::_Select1st<std::pair<const bpp::Node* const, double> >, std::less<const bpp::Node*>, std::allocator<std::pair<const bpp::Node* const, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const bpp::Node* const, double> >}' will change in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/6/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = std::__cxx11::basic_string<char>; _Tp = double; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]':
/usr/include/c++/6/bits/stl_map.h:502:4: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >}' will change in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
In file included from /usr/include/c++/6/map:60:0,
from /usr/include/Bpp/Utils/MapTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Node.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.cpp:42:
/usr/include/c++/6/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const bpp::Node*&&>, std::tuple<>}; _Key = const bpp::Node*; _Val = std::pair<const bpp::Node* const, double>; _KeyOfValue = std::_Select1st<std::pair<const bpp::Node* const, double> >; _Compare = std::less<const bpp::Node*>; _Alloc = std::allocator<std::pair<const bpp::Node* const, double> >]':
/usr/include/c++/6/bits/stl_tree.h:2193:7: note: parameter passing for argument of type 'std::_Rb_tree<const bpp::Node*, std::pair<const bpp::Node* const, double>, std::_Select1st<std::pair<const bpp::Node* const, double> >, std::less<const bpp::Node*>, std::allocator<std::pair<const bpp::Node* const, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const bpp::Node* const, double> >}' will change in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, double>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]':
/usr/include/c++/6/bits/stl_tree.h:2193:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >}' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.cpp:42:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
In file included from /usr/include/c++/6/map:60:0,
from /usr/include/Bpp/Utils/MapTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Node.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.cpp:42:
/usr/include/c++/6/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = const bpp::Node*; _Val = std::pair<const bpp::Node* const, double>; _KeyOfValue = std::_Select1st<std::pair<const bpp::Node* const, double> >; _Compare = std::less<const bpp::Node*>; _Alloc = std::allocator<std::pair<const bpp::Node* const, double> >]':
/usr/include/c++/6/bits/stl_tree.h:1928:5: note: parameter passing for argument of type 'std::_Rb_tree<const bpp::Node*, std::pair<const bpp::Node* const, double>, std::_Select1st<std::pair<const bpp::Node* const, double> >, std::less<const bpp::Node*>, std::allocator<std::pair<const bpp::Node* const, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const bpp::Node* const, double> >}' will change in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, double>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]':
/usr/include/c++/6/bits/stl_tree.h:1928:5: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >}' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.cpp:42:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = std::pair<std::__cxx11::basic_string<char>, double>*; _ForwardIterator = std::pair<std::__cxx11::basic_string<char>, double>*; _Allocator = std::allocator<std::pair<std::__cxx11::basic_string<char>, double> >]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<std::pair<std::__cxx11::basic_string<char>, double>*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<std::pair<std::__cxx11::basic_string<char>, double>*>; _ForwardIterator = std::pair<std::__cxx11::basic_string<char>, double>*; _Tp = std::pair<std::__cxx11::basic_string<char>, double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<std::pair<std::__cxx11::basic_string<char>, double>*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<std::pair<std::__cxx11::basic_string<char>, double>*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<std::pair<std::__cxx11::basic_string<char>, double>*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.cpp:42:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.cpp:42:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<std::pair<std::__cxx11::basic_string<char>, double>*>; _ForwardIterator = std::pair<std::__cxx11::basic_string<char>, double>*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<std::pair<std::__cxx11::basic_string<char>, double>*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<std::pair<std::__cxx11::basic_string<char>, double>*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<std::pair<std::__cxx11::basic_string<char>, double>*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.cpp:42:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.cpp:42:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<std::pair<std::__cxx11::basic_string<char>, double>*>; _ForwardIterator = std::pair<std::__cxx11::basic_string<char>, double>*; bool _TrivialValueTypes = false]':
/usr/include/c++/6/bits/stl_uninitialized.h:68:9: note: parameter passing for argument of type 'std::move_iterator<std::pair<std::__cxx11::basic_string<char>, double>*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:68:9: note: parameter passing for argument of type 'std::move_iterator<std::pair<std::__cxx11::basic_string<char>, double>*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.cpp:42:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.cpp:42:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.cpp:42:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.cpp:42:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.cpp:42:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.cpp:42:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
[ 87%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/OptimizationTools.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/OptimizationTools.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/OptimizationTools.cpp
[ 87%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.cpp
/<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.cpp: In member function 'void bpp::NNITopologySearch::searchPhyML()':
/<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.cpp:267:85: note: parameter passing for argument of type 'std::vector<double>::const_iterator {aka __gnu_cxx::__normal_iterator<const double*, std::vector<double> >}' will change in GCC 7.1
improvement.erase(improvement.begin() + static_cast<ptrdiff_t>(j - 1));
^
/<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.cpp:290:88: note: parameter passing for argument of type 'std::vector<double>::const_iterator {aka __gnu_cxx::__normal_iterator<const double*, std::vector<double> >}' will change in GCC 7.1
improvement.insert(improvement.begin() + static_cast<ptrdiff_t>(pos), diff);
^
/<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.cpp:296:56: note: parameter passing for argument of type 'std::vector<double>::const_iterator {aka __gnu_cxx::__normal_iterator<const double*, std::vector<double> >}' will change in GCC 7.1
improvement.insert(improvement.end(), diff);
^
/<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.cpp:352:96: note: parameter passing for argument of type 'std::vector<double>::const_iterator {aka __gnu_cxx::__normal_iterator<const double*, std::vector<double> >}' will change in GCC 7.1
improvement.erase(improvement.begin() + static_cast<ptrdiff_t>(n), improvement.end());
^
/<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.cpp:352:96: note: parameter passing for argument of type 'std::vector<double>::const_iterator {aka __gnu_cxx::__normal_iterator<const double*, std::vector<double> >}' will change in GCC 7.1
/<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.cpp:352:96: note: parameter passing for argument of type 'std::vector<double>::const_iterator {aka __gnu_cxx::__normal_iterator<const double*, std::vector<double> >}' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(std::vector<_Tp, _Alloc>::const_iterator, std::vector<_Tp, _Alloc>::const_iterator) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:1174:7: note: parameter passing for argument of type 'std::vector<double>::const_iterator {aka __gnu_cxx::__normal_iterator<const double*, std::vector<double> >}' will change in GCC 7.1
erase(const_iterator __first, const_iterator __last)
^~~~~
/usr/include/c++/6/bits/stl_vector.h:1174:7: note: parameter passing for argument of type 'std::vector<double>::const_iterator {aka __gnu_cxx::__normal_iterator<const double*, std::vector<double> >}' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1178:71: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
^
/usr/include/c++/6/bits/stl_vector.h:1178:71: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1178:71: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(std::vector<_Tp, _Alloc>::const_iterator) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:1147:7: note: parameter passing for argument of type 'std::vector<double>::const_iterator {aka __gnu_cxx::__normal_iterator<const double*, std::vector<double> >}' will change in GCC 7.1
erase(const_iterator __position)
^~~~~
/usr/include/c++/6/bits/stl_vector.h:1148:58: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
{ return _M_erase(begin() + (__position - cbegin())); }
^
In file included from /usr/include/c++/6/vector:69:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.cpp:40:
/usr/include/c++/6/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(std::vector<_Tp, _Alloc>::const_iterator, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:107:5: note: parameter passing for argument of type 'std::vector<double>::const_iterator {aka __gnu_cxx::__normal_iterator<const double*, std::vector<double> >}' will change in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:128:8: note: parameter passing for argument of type 'const __gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
_M_insert_aux(__pos, std::move(__x_copy));
^~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:131:6: note: parameter passing for argument of type 'const __gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
_M_insert_aux(__pos, __x);
^~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::iterator) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:153:5: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' will change in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:153:5: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.cpp:40:
/usr/include/c++/6/bits/vector.tcc:159:6: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
_GLIBCXX_MOVE3(__last, end(), __first);
^
/usr/include/c++/6/bits/vector.tcc:159:6: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:159:6: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:69:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.cpp:40:
/usr/include/c++/6/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:141:5: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' will change in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.cpp:40:
/usr/include/c++/6/bits/vector.tcc:145:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
_GLIBCXX_MOVE3(__position + 1, end(), __position);
^
/usr/include/c++/6/bits/vector.tcc:145:2: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:145:2: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:69:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.cpp:40:
/usr/include/c++/6/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_insert_aux(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:321:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' will change in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_insert_aux(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:321:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::move(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_algobase.h:479:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
move(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:479:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:479:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:488:47: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__miter_base(__last), __result);
^
/usr/include/c++/6/bits/stl_algobase.h:488:47: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:488:47: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double>]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = true; _II = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/NNITopologySearch.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/map:61:0,
from /usr/include/Bpp/Utils/MapTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Node.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.cpp:40:
/usr/include/c++/6/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_map.h:483:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
[ 87%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Parsimony/DRTreeParsimonyData.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Parsimony/DRTreeParsimonyData.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Parsimony/DRTreeParsimonyData.cpp
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/map:60:0,
from /usr/include/Bpp/Utils/MapTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Node.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.cpp:40:
/usr/include/c++/6/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const int&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_tree.h:2193:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/map:60:0,
from /usr/include/Bpp/Utils/MapTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Node.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.cpp:40:
/usr/include/c++/6/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_tree.h:1928:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Parsimony/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Parsimony/../TreeTemplate.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Parsimony/TreeParsimonyScore.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Parsimony/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Parsimony/../TreeTemplate.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Parsimony/TreeParsimonyScore.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Parsimony/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Parsimony/../TreeTemplate.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Parsimony/TreeParsimonyScore.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 88%] Linking CXX static library libbpp-phyl.a
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -P CMakeFiles/bpp-phyl-static.dir/cmake_clean_target.cmake
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpp-phyl-static.dir/link.txt --verbose=1
/usr/bin/ar qc libbpp-phyl.a CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/BipartitionList.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/BipartitionTools.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/BioNJ.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/DistanceEstimation.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/HierarchicalClustering.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/NeighborJoining.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/PGMA.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Graphics/AbstractDendrogramPlot.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Graphics/AbstractTreeDrawing.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Graphics/CladogramPlot.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Graphics/PhylogramPlot.cpp.o 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CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M1.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M10.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M2.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M3.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M7.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M8.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M9.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/FromMixtureSubstitutionModel.cpp.o 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CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/SSR.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/T92.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/TN93.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/YpR.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/gBGC.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/OneChangeTransitionModel.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/Coala.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/CoalaCore.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/DSO78.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/JCprot.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/JTT92.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LG08.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/WAG01.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/RE08.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/StateMap.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/SubstitutionModelSet.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/SubstitutionModelSetTools.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/WordSubstitutionModel.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/NNITopologySearch.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Node.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/OptimizationTools.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Parsimony/DRTreeParsimonyData.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Parsimony/DRTreeParsimonyScore.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/PatternTools.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/PhyloStatistics.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Simulation/MutationProcess.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Simulation/SequenceSimulationTools.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/SitePatterns.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/TreeExceptions.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/TreeTemplateTools.cpp.o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/TreeTools.cpp.o
[ 89%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Parsimony/DRTreeParsimonyScore.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Parsimony/DRTreeParsimonyScore.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Parsimony/DRTreeParsimonyScore.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/ClockTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/OptimizationTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/OptimizationTools.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/ClockTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/OptimizationTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/OptimizationTools.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/ClockTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/OptimizationTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/OptimizationTools.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
[ 89%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/PatternTools.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/PatternTools.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/PatternTools.cpp
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/ClockTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/OptimizationTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/OptimizationTools.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/ClockTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/OptimizationTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/OptimizationTools.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/ClockTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/OptimizationTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/OptimizationTools.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/ClockTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/OptimizationTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/OptimizationTools.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/ClockTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/OptimizationTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/OptimizationTools.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/ClockTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/OptimizationTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/OptimizationTools.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/../Node.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Likelihood/ClockTreeLikelihood.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/OptimizationTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/OptimizationTools.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
/usr/bin/ranlib libbpp-phyl.a
[ 89%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/PhyloStatistics.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/PhyloStatistics.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/PhyloStatistics.cpp
[ 90%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Simulation/MutationProcess.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Simulation/MutationProcess.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/MutationProcess.cpp
[ 90%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/PhyloStatistics.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/PhyloStatistics.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 90%] Built target bpp-phyl-static
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
[ 90%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Simulation/SequenceSimulationTools.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Simulation/SequenceSimulationTools.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/SequenceSimulationTools.cpp
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/PhyloStatistics.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/PhyloStatistics.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Tree.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/PhyloStatistics.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/PhyloStatistics.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 90%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/SitePatterns.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/SitePatterns.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/SitePatterns.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/MutationProcess.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/MutationProcess.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/MutationProcess.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/MutationProcess.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/MutationProcess.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/MutationProcess.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/MutationProcess.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/MutationProcess.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/MutationProcess.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/MutationProcess.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/MutationProcess.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/MutationProcess.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/MutationProcess.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/MutationProcess.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/MutationProcess.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/MutationProcess.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/MutationProcess.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/MutationProcess.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/../Model/SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/MutationProcess.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/MutationProcess.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 91%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/TreeExceptions.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/TreeExceptions.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.cpp
[ 91%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/TreeTemplateTools.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/TreeTemplateTools.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.cpp
[ 91%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/TreeTools.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/TreeTools.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Site.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/SiteSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/DetailedSiteSimulator.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp:42:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Site.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/SiteSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/DetailedSiteSimulator.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp:42:
/usr/include/c++/6/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__x.end());
^
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Site.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/SiteSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/DetailedSiteSimulator.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp:42:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Site.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/SiteSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/DetailedSiteSimulator.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp:42:
/usr/include/c++/6/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1225:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
^~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Site.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/SiteSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/DetailedSiteSimulator.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp:42:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Site.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/SiteSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/DetailedSiteSimulator.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp:42:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:151:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(__first, __last);
^~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Site.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/SiteSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/DetailedSiteSimulator.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp:42:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Site.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/SiteSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/DetailedSiteSimulator.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp:42:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Site.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/SiteSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/DetailedSiteSimulator.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp:42:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Site.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/SiteSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/DetailedSiteSimulator.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp:42:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:126:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Site.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/SiteSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/DetailedSiteSimulator.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp:42:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Site.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/SiteSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/DetailedSiteSimulator.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp:42:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Site.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/SiteSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/DetailedSiteSimulator.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp:42:
/usr/include/c++/6/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Site.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/SiteSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/DetailedSiteSimulator.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp:42:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Site.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/SiteSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/DetailedSiteSimulator.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp:42:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Site.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/SiteSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/DetailedSiteSimulator.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp:42:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Site.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/SiteSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/DetailedSiteSimulator.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp:42:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/Site.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/SiteSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/DetailedSiteSimulator.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp:42:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/map:61:0,
from /usr/include/Bpp/Utils/MapTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Node.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.cpp:42:
/usr/include/c++/6/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = const bpp::Node*; _Tp = double; _Compare = std::less<const bpp::Node*>; _Alloc = std::allocator<std::pair<const bpp::Node* const, double> >]':
/usr/include/c++/6/bits/stl_map.h:502:4: note: parameter passing for argument of type 'std::_Rb_tree<const bpp::Node*, std::pair<const bpp::Node* const, double>, std::_Select1st<std::pair<const bpp::Node* const, double> >, std::less<const bpp::Node*>, std::allocator<std::pair<const bpp::Node* const, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const bpp::Node* const, double> >}' will change in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/6/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = std::__cxx11::basic_string<char>; _Tp = double; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]':
/usr/include/c++/6/bits/stl_map.h:502:4: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >}' will change in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
In file included from /usr/include/c++/6/map:60:0,
from /usr/include/Bpp/Utils/MapTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Node.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.cpp:42:
/usr/include/c++/6/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const bpp::Node*&&>, std::tuple<>}; _Key = const bpp::Node*; _Val = std::pair<const bpp::Node* const, double>; _KeyOfValue = std::_Select1st<std::pair<const bpp::Node* const, double> >; _Compare = std::less<const bpp::Node*>; _Alloc = std::allocator<std::pair<const bpp::Node* const, double> >]':
/usr/include/c++/6/bits/stl_tree.h:2193:7: note: parameter passing for argument of type 'std::_Rb_tree<const bpp::Node*, std::pair<const bpp::Node* const, double>, std::_Select1st<std::pair<const bpp::Node* const, double> >, std::less<const bpp::Node*>, std::allocator<std::pair<const bpp::Node* const, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const bpp::Node* const, double> >}' will change in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, double>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]':
/usr/include/c++/6/bits/stl_tree.h:2193:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >}' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.cpp:42:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
In file included from /usr/include/c++/6/map:60:0,
from /usr/include/Bpp/Utils/MapTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Node.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.cpp:42:
/usr/include/c++/6/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = const bpp::Node*; _Val = std::pair<const bpp::Node* const, double>; _KeyOfValue = std::_Select1st<std::pair<const bpp::Node* const, double> >; _Compare = std::less<const bpp::Node*>; _Alloc = std::allocator<std::pair<const bpp::Node* const, double> >]':
/usr/include/c++/6/bits/stl_tree.h:1928:5: note: parameter passing for argument of type 'std::_Rb_tree<const bpp::Node*, std::pair<const bpp::Node* const, double>, std::_Select1st<std::pair<const bpp::Node* const, double> >, std::less<const bpp::Node*>, std::allocator<std::pair<const bpp::Node* const, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const bpp::Node* const, double> >}' will change in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, double>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]':
/usr/include/c++/6/bits/stl_tree.h:1928:5: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >}' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.cpp:42:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = std::pair<std::__cxx11::basic_string<char>, double>*; _ForwardIterator = std::pair<std::__cxx11::basic_string<char>, double>*; _Allocator = std::allocator<std::pair<std::__cxx11::basic_string<char>, double> >]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<std::pair<std::__cxx11::basic_string<char>, double>*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<std::pair<std::__cxx11::basic_string<char>, double>*>; _ForwardIterator = std::pair<std::__cxx11::basic_string<char>, double>*; _Tp = std::pair<std::__cxx11::basic_string<char>, double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<std::pair<std::__cxx11::basic_string<char>, double>*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<std::pair<std::__cxx11::basic_string<char>, double>*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<std::pair<std::__cxx11::basic_string<char>, double>*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.cpp:42:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.cpp:42:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<std::pair<std::__cxx11::basic_string<char>, double>*>; _ForwardIterator = std::pair<std::__cxx11::basic_string<char>, double>*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<std::pair<std::__cxx11::basic_string<char>, double>*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<std::pair<std::__cxx11::basic_string<char>, double>*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<std::pair<std::__cxx11::basic_string<char>, double>*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.cpp:42:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.cpp:42:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<std::pair<std::__cxx11::basic_string<char>, double>*>; _ForwardIterator = std::pair<std::__cxx11::basic_string<char>, double>*; bool _TrivialValueTypes = false]':
/usr/include/c++/6/bits/stl_uninitialized.h:68:9: note: parameter passing for argument of type 'std::move_iterator<std::pair<std::__cxx11::basic_string<char>, double>*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:68:9: note: parameter passing for argument of type 'std::move_iterator<std::pair<std::__cxx11::basic_string<char>, double>*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.cpp:42:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.cpp:42:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.cpp:42:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.cpp:42:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.cpp:42:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplateTools.cpp:42:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/map:61:0,
from /usr/include/Bpp/Utils/MapTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Node.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.cpp:40:
/usr/include/c++/6/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_map.h:483:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/map:60:0,
from /usr/include/Bpp/Utils/MapTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Node.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.cpp:40:
/usr/include/c++/6/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const int&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_tree.h:2193:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/map:60:0,
from /usr/include/Bpp/Utils/MapTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Node.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.cpp:40:
/usr/include/c++/6/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_tree.h:1928:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double>]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTools.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 92%] Linking CXX shared library libbpp-phyl.so
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpp-phyl-shared.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libbpp-phyl.so.11 -o libbpp-phyl.so.11.0.0 CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp.o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/BipartitionList.cpp.o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/BipartitionTools.cpp.o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.cpp.o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Distance/BioNJ.cpp.o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Distance/DistanceEstimation.cpp.o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Distance/HierarchicalClustering.cpp.o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Distance/NeighborJoining.cpp.o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Distance/PGMA.cpp.o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Graphics/AbstractDendrogramPlot.cpp.o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Graphics/AbstractTreeDrawing.cpp.o 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cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_likelihood_clock.dir/link.txt --verbose=1
/usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/test_likelihood_clock.dir/test_likelihood_clock.cpp.o -o test_likelihood_clock -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src -rdynamic ../src/libbpp-phyl.so.11.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.11.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.3.0.0
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Io/FileTools.h:46,
from /usr/include/Bpp/App/ApplicationTools.h:44,
from /<<PKGBUILDDIR>>/test/test_mapping.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:69:0,
from /usr/include/Bpp/Io/FileTools.h:46,
from /usr/include/Bpp/App/ApplicationTools.h:44,
from /<<PKGBUILDDIR>>/test/test_mapping.cpp:40:
/usr/include/c++/6/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__x.end());
^
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
^~~
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 95%] Built target test_likelihood_clock
make -f test/CMakeFiles/test_bowker.dir/build.make test/CMakeFiles/test_bowker.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_bowker.dir/DependInfo.cmake --color=
Scanning dependencies of target test_bowker
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f test/CMakeFiles/test_bowker.dir/build.make test/CMakeFiles/test_bowker.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 95%] Building CXX object test/CMakeFiles/test_bowker.dir/test_bowker.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIE -o CMakeFiles/test_bowker.dir/test_bowker.cpp.o -c /<<PKGBUILDDIR>>/test/test_bowker.cpp
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Io/FileTools.h:46,
from /usr/include/Bpp/App/ApplicationTools.h:44,
from /<<PKGBUILDDIR>>/test/test_mapping.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Io/FileTools.h:46,
from /usr/include/Bpp/App/ApplicationTools.h:44,
from /<<PKGBUILDDIR>>/test/test_mapping.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1225:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
^~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Io/FileTools.h:45,
from /usr/include/Bpp/App/ApplicationTools.h:44,
from /<<PKGBUILDDIR>>/test/test_mapping.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Io/FileTools.h:46,
from /usr/include/Bpp/App/ApplicationTools.h:44,
from /<<PKGBUILDDIR>>/test/test_mapping.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:151:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(__first, __last);
^~~~~~~~
[ 96%] Linking CXX executable test_nhx
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_nhx.dir/link.txt --verbose=1
/usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/test_nhx.dir/test_nhx.cpp.o -o test_nhx -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src -rdynamic ../src/libbpp-phyl.so.11.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.11.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.3.0.0
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Io/FileTools.h:46,
from /usr/include/Bpp/App/ApplicationTools.h:44,
from /<<PKGBUILDDIR>>/test/test_mapping.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 96%] Built target test_nhx
make -f test/CMakeFiles/test_mapping_codon.dir/build.make test/CMakeFiles/test_mapping_codon.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_mapping_codon.dir/DependInfo.cmake --color=
Scanning dependencies of target test_mapping_codon
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f test/CMakeFiles/test_mapping_codon.dir/build.make test/CMakeFiles/test_mapping_codon.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 96%] Building CXX object test/CMakeFiles/test_mapping_codon.dir/test_mapping_codon.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIE -o CMakeFiles/test_mapping_codon.dir/test_mapping_codon.cpp.o -c /<<PKGBUILDDIR>>/test/test_mapping_codon.cpp
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Io/FileTools.h:45,
from /usr/include/Bpp/App/ApplicationTools.h:44,
from /<<PKGBUILDDIR>>/test/test_mapping.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Io/FileTools.h:45,
from /usr/include/Bpp/App/ApplicationTools.h:44,
from /<<PKGBUILDDIR>>/test/test_mapping.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Io/FileTools.h:46,
from /usr/include/Bpp/App/ApplicationTools.h:44,
from /<<PKGBUILDDIR>>/test/test_mapping.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:126:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Io/FileTools.h:46,
from /usr/include/Bpp/App/ApplicationTools.h:44,
from /<<PKGBUILDDIR>>/test/test_mapping.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Io/FileTools.h:45,
from /usr/include/Bpp/App/ApplicationTools.h:44,
from /<<PKGBUILDDIR>>/test/test_mapping.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Io/FileTools.h:46,
from /usr/include/Bpp/App/ApplicationTools.h:44,
from /<<PKGBUILDDIR>>/test/test_mapping.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Io/FileTools.h:46,
from /usr/include/Bpp/App/ApplicationTools.h:44,
from /<<PKGBUILDDIR>>/test/test_mapping.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Io/FileTools.h:45,
from /usr/include/Bpp/App/ApplicationTools.h:44,
from /<<PKGBUILDDIR>>/test/test_mapping.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Io/FileTools.h:46,
from /usr/include/Bpp/App/ApplicationTools.h:44,
from /<<PKGBUILDDIR>>/test/test_mapping.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Io/FileTools.h:45,
from /usr/include/Bpp/App/ApplicationTools.h:44,
from /<<PKGBUILDDIR>>/test/test_mapping.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Io/FileTools.h:45,
from /usr/include/Bpp/App/ApplicationTools.h:44,
from /<<PKGBUILDDIR>>/test/test_mapping.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 96%] Linking CXX executable test_mapping
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_mapping.dir/link.txt --verbose=1
/usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/test_mapping.dir/test_mapping.cpp.o -o test_mapping -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src -rdynamic ../src/libbpp-phyl.so.11.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.11.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.3.0.0
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 96%] Built target test_mapping
make -f test/CMakeFiles/test_detailed_simulations.dir/build.make test/CMakeFiles/test_detailed_simulations.dir/depend
[ 96%] Linking CXX executable test_likelihood
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_likelihood.dir/link.txt --verbose=1
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_detailed_simulations.dir/DependInfo.cmake --color=
/usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/test_likelihood.dir/test_likelihood.cpp.o -o test_likelihood -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src -rdynamic ../src/libbpp-phyl.so.11.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.11.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.3.0.0
Scanning dependencies of target test_detailed_simulations
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f test/CMakeFiles/test_detailed_simulations.dir/build.make test/CMakeFiles/test_detailed_simulations.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 96%] Building CXX object test/CMakeFiles/test_detailed_simulations.dir/test_detailed_simulations.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIE -o CMakeFiles/test_detailed_simulations.dir/test_detailed_simulations.cpp.o -c /<<PKGBUILDDIR>>/test/test_detailed_simulations.cpp
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 96%] Built target test_likelihood
make -f test/CMakeFiles/test_likelihood_nh.dir/build.make test/CMakeFiles/test_likelihood_nh.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_likelihood_nh.dir/DependInfo.cmake --color=
Scanning dependencies of target test_likelihood_nh
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f test/CMakeFiles/test_likelihood_nh.dir/build.make test/CMakeFiles/test_likelihood_nh.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 96%] Building CXX object test/CMakeFiles/test_likelihood_nh.dir/test_likelihood_nh.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIE -o CMakeFiles/test_likelihood_nh.dir/test_likelihood_nh.cpp.o -c /<<PKGBUILDDIR>>/test/test_likelihood_nh.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/DNA.h:44,
from /<<PKGBUILDDIR>>/test/test_bowker.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/DNA.h:44,
from /<<PKGBUILDDIR>>/test/test_bowker.cpp:40:
/usr/include/c++/6/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__x.end());
^
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/DNA.h:44,
from /<<PKGBUILDDIR>>/test/test_bowker.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/DNA.h:44,
from /<<PKGBUILDDIR>>/test/test_bowker.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1225:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
^~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/DNA.h:44,
from /<<PKGBUILDDIR>>/test/test_bowker.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/DNA.h:44,
from /<<PKGBUILDDIR>>/test/test_bowker.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:151:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(__first, __last);
^~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/DNA.h:44,
from /<<PKGBUILDDIR>>/test/test_bowker.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/DNA.h:44,
from /<<PKGBUILDDIR>>/test/test_bowker.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/DNA.h:44,
from /<<PKGBUILDDIR>>/test/test_bowker.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/DNA.h:44,
from /<<PKGBUILDDIR>>/test/test_bowker.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:126:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/DNA.h:44,
from /<<PKGBUILDDIR>>/test/test_bowker.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/DNA.h:44,
from /<<PKGBUILDDIR>>/test/test_bowker.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/DNA.h:44,
from /<<PKGBUILDDIR>>/test/test_bowker.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/DNA.h:44,
from /<<PKGBUILDDIR>>/test/test_bowker.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/DNA.h:44,
from /<<PKGBUILDDIR>>/test/test_bowker.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/DNA.h:44,
from /<<PKGBUILDDIR>>/test/test_bowker.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/DNA.h:44,
from /<<PKGBUILDDIR>>/test/test_bowker.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:44,
from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45,
from /usr/include/Bpp/Seq/Alphabet/DNA.h:44,
from /<<PKGBUILDDIR>>/test/test_bowker.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Io/FileTools.h:46,
from /usr/include/Bpp/App/ApplicationTools.h:44,
from /<<PKGBUILDDIR>>/test/test_mapping_codon.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:69:0,
from /usr/include/Bpp/Io/FileTools.h:46,
from /usr/include/Bpp/App/ApplicationTools.h:44,
from /<<PKGBUILDDIR>>/test/test_mapping_codon.cpp:40:
/usr/include/c++/6/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__x.end());
^
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
^~~
[ 96%] Linking CXX executable test_bowker
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_bowker.dir/link.txt --verbose=1
/usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/test_bowker.dir/test_bowker.cpp.o -o test_bowker -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src -rdynamic ../src/libbpp-phyl.so.11.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.11.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.3.0.0
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Io/FileTools.h:46,
from /usr/include/Bpp/App/ApplicationTools.h:44,
from /<<PKGBUILDDIR>>/test/test_mapping_codon.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Io/FileTools.h:46,
from /usr/include/Bpp/App/ApplicationTools.h:44,
from /<<PKGBUILDDIR>>/test/test_mapping_codon.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1225:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
^~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Io/FileTools.h:45,
from /usr/include/Bpp/App/ApplicationTools.h:44,
from /<<PKGBUILDDIR>>/test/test_mapping_codon.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Io/FileTools.h:46,
from /usr/include/Bpp/App/ApplicationTools.h:44,
from /<<PKGBUILDDIR>>/test/test_mapping_codon.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:151:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(__first, __last);
^~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Io/FileTools.h:46,
from /usr/include/Bpp/App/ApplicationTools.h:44,
from /<<PKGBUILDDIR>>/test/test_mapping_codon.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Io/FileTools.h:45,
from /usr/include/Bpp/App/ApplicationTools.h:44,
from /<<PKGBUILDDIR>>/test/test_mapping_codon.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Io/FileTools.h:45,
from /usr/include/Bpp/App/ApplicationTools.h:44,
from /<<PKGBUILDDIR>>/test/test_mapping_codon.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Io/FileTools.h:46,
from /usr/include/Bpp/App/ApplicationTools.h:44,
from /<<PKGBUILDDIR>>/test/test_mapping_codon.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:126:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
^~~
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 96%] Built target test_bowker
make -f test/CMakeFiles/test_simulations.dir/build.make test/CMakeFiles/test_simulations.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_simulations.dir/DependInfo.cmake --color=
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Io/FileTools.h:46,
from /usr/include/Bpp/App/ApplicationTools.h:44,
from /<<PKGBUILDDIR>>/test/test_mapping_codon.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
Scanning dependencies of target test_simulations
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f test/CMakeFiles/test_simulations.dir/build.make test/CMakeFiles/test_simulations.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 97%] Building CXX object test/CMakeFiles/test_simulations.dir/test_simulations.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIE -o CMakeFiles/test_simulations.dir/test_simulations.cpp.o -c /<<PKGBUILDDIR>>/test/test_simulations.cpp
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Io/FileTools.h:45,
from /usr/include/Bpp/App/ApplicationTools.h:44,
from /<<PKGBUILDDIR>>/test/test_mapping_codon.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Io/FileTools.h:46,
from /usr/include/Bpp/App/ApplicationTools.h:44,
from /<<PKGBUILDDIR>>/test/test_mapping_codon.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Io/FileTools.h:46,
from /usr/include/Bpp/App/ApplicationTools.h:44,
from /<<PKGBUILDDIR>>/test/test_mapping_codon.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Io/FileTools.h:45,
from /usr/include/Bpp/App/ApplicationTools.h:44,
from /<<PKGBUILDDIR>>/test/test_mapping_codon.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Io/FileTools.h:46,
from /usr/include/Bpp/App/ApplicationTools.h:44,
from /<<PKGBUILDDIR>>/test/test_mapping_codon.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Io/FileTools.h:45,
from /usr/include/Bpp/App/ApplicationTools.h:44,
from /<<PKGBUILDDIR>>/test/test_mapping_codon.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Io/FileTools.h:45,
from /usr/include/Bpp/App/ApplicationTools.h:44,
from /<<PKGBUILDDIR>>/test/test_mapping_codon.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:43,
from /usr/include/Bpp/Numeric/Prob/ConstantDistribution.h:43,
from /<<PKGBUILDDIR>>/test/test_detailed_simulations.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:69:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:43,
from /usr/include/Bpp/Numeric/Prob/ConstantDistribution.h:43,
from /<<PKGBUILDDIR>>/test/test_detailed_simulations.cpp:40:
/usr/include/c++/6/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__x.end());
^
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
^~~
In file included from /usr/include/c++/6/map:61:0,
from /usr/include/Bpp/Numeric/AbstractParametrizable.h:47,
from /usr/include/Bpp/Numeric/Function/Functions.h:45,
from /usr/include/Bpp/Numeric/NumTools.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:44,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:43,
from /usr/include/Bpp/Numeric/Prob/ConstantDistribution.h:43,
from /<<PKGBUILDDIR>>/test/test_detailed_simulations.cpp:40:
/usr/include/c++/6/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_map.h:483:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:43,
from /usr/include/Bpp/Numeric/Prob/ConstantDistribution.h:43,
from /<<PKGBUILDDIR>>/test/test_detailed_simulations.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:43,
from /usr/include/Bpp/Numeric/Prob/ConstantDistribution.h:43,
from /<<PKGBUILDDIR>>/test/test_detailed_simulations.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1225:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
^~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:43,
from /usr/include/Bpp/Numeric/Prob/ConstantDistribution.h:43,
from /<<PKGBUILDDIR>>/test/test_detailed_simulations.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:43,
from /usr/include/Bpp/Numeric/Prob/ConstantDistribution.h:43,
from /<<PKGBUILDDIR>>/test/test_detailed_simulations.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:151:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(__first, __last);
^~~~~~~~
[ 98%] Linking CXX executable test_mapping_codon
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_mapping_codon.dir/link.txt --verbose=1
/usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/test_mapping_codon.dir/test_mapping_codon.cpp.o -o test_mapping_codon -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src -rdynamic ../src/libbpp-phyl.so.11.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.11.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.3.0.0
In file included from /usr/include/c++/6/map:60:0,
from /usr/include/Bpp/Numeric/AbstractParametrizable.h:47,
from /usr/include/Bpp/Numeric/Function/Functions.h:45,
from /usr/include/Bpp/Numeric/NumTools.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:44,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:43,
from /usr/include/Bpp/Numeric/Prob/ConstantDistribution.h:43,
from /<<PKGBUILDDIR>>/test/test_detailed_simulations.cpp:40:
/usr/include/c++/6/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const int&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_tree.h:2193:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:43,
from /usr/include/Bpp/Numeric/Prob/ConstantDistribution.h:43,
from /<<PKGBUILDDIR>>/test/test_detailed_simulations.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:43,
from /usr/include/Bpp/Numeric/Prob/ConstantDistribution.h:43,
from /<<PKGBUILDDIR>>/test/test_detailed_simulations.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:43,
from /usr/include/Bpp/Numeric/Prob/ConstantDistribution.h:43,
from /<<PKGBUILDDIR>>/test/test_detailed_simulations.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:43,
from /usr/include/Bpp/Numeric/Prob/ConstantDistribution.h:43,
from /<<PKGBUILDDIR>>/test/test_detailed_simulations.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:126:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
^~~
In file included from /usr/include/c++/6/map:60:0,
from /usr/include/Bpp/Numeric/AbstractParametrizable.h:47,
from /usr/include/Bpp/Numeric/Function/Functions.h:45,
from /usr/include/Bpp/Numeric/NumTools.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:44,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:43,
from /usr/include/Bpp/Numeric/Prob/ConstantDistribution.h:43,
from /<<PKGBUILDDIR>>/test/test_detailed_simulations.cpp:40:
/usr/include/c++/6/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/6/bits/stl_tree.h:1928:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' will change in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:43,
from /usr/include/Bpp/Numeric/Prob/ConstantDistribution.h:43,
from /<<PKGBUILDDIR>>/test/test_detailed_simulations.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:43,
from /usr/include/Bpp/Numeric/Prob/ConstantDistribution.h:43,
from /<<PKGBUILDDIR>>/test/test_detailed_simulations.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:43,
from /usr/include/Bpp/Numeric/Prob/ConstantDistribution.h:43,
from /<<PKGBUILDDIR>>/test/test_detailed_simulations.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 98%] Built target test_mapping_codon
make -f test/CMakeFiles/test_models.dir/build.make test/CMakeFiles/test_models.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_models.dir/DependInfo.cmake --color=
Scanning dependencies of target test_models
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f test/CMakeFiles/test_models.dir/build.make test/CMakeFiles/test_models.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 98%] Building CXX object test/CMakeFiles/test_models.dir/test_models.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIE -o CMakeFiles/test_models.dir/test_models.cpp.o -c /<<PKGBUILDDIR>>/test/test_models.cpp
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:43,
from /usr/include/Bpp/Numeric/Prob/ConstantDistribution.h:43,
from /<<PKGBUILDDIR>>/test/test_detailed_simulations.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:43,
from /usr/include/Bpp/Numeric/Prob/ConstantDistribution.h:43,
from /<<PKGBUILDDIR>>/test/test_detailed_simulations.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:43,
from /usr/include/Bpp/Numeric/Prob/ConstantDistribution.h:43,
from /<<PKGBUILDDIR>>/test/test_detailed_simulations.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:43,
from /usr/include/Bpp/Numeric/Prob/ConstantDistribution.h:43,
from /<<PKGBUILDDIR>>/test/test_detailed_simulations.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43,
from /usr/include/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:43,
from /usr/include/Bpp/Numeric/Prob/ConstantDistribution.h:43,
from /<<PKGBUILDDIR>>/test/test_detailed_simulations.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 99%] Linking CXX executable test_detailed_simulations
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_detailed_simulations.dir/link.txt --verbose=1
/usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/test_detailed_simulations.dir/test_detailed_simulations.cpp.o -o test_detailed_simulations -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src -rdynamic ../src/libbpp-phyl.so.11.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.11.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.3.0.0
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Matrix/MatrixTools.h:43,
from /<<PKGBUILDDIR>>/test/test_likelihood_nh.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:69:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Matrix/MatrixTools.h:43,
from /<<PKGBUILDDIR>>/test/test_likelihood_nh.cpp:40:
/usr/include/c++/6/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__x.end());
^
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
^~~
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 99%] Built target test_detailed_simulations
make -f test/CMakeFiles/test_tree.dir/build.make test/CMakeFiles/test_tree.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_tree.dir/DependInfo.cmake --color=
Scanning dependencies of target test_tree
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f test/CMakeFiles/test_tree.dir/build.make test/CMakeFiles/test_tree.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 99%] Building CXX object test/CMakeFiles/test_tree.dir/test_tree.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIE -o CMakeFiles/test_tree.dir/test_tree.cpp.o -c /<<PKGBUILDDIR>>/test/test_tree.cpp
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Matrix/MatrixTools.h:43,
from /<<PKGBUILDDIR>>/test/test_likelihood_nh.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Matrix/MatrixTools.h:43,
from /<<PKGBUILDDIR>>/test/test_likelihood_nh.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1225:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
^~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Matrix/MatrixTools.h:43,
from /<<PKGBUILDDIR>>/test/test_likelihood_nh.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Matrix/MatrixTools.h:43,
from /<<PKGBUILDDIR>>/test/test_likelihood_nh.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:151:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(__first, __last);
^~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Matrix/MatrixTools.h:43,
from /<<PKGBUILDDIR>>/test/test_likelihood_nh.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Matrix/MatrixTools.h:43,
from /<<PKGBUILDDIR>>/test/test_likelihood_nh.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Matrix/MatrixTools.h:43,
from /<<PKGBUILDDIR>>/test/test_likelihood_nh.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Matrix/MatrixTools.h:43,
from /<<PKGBUILDDIR>>/test/test_likelihood_nh.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:126:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Matrix/MatrixTools.h:43,
from /<<PKGBUILDDIR>>/test/test_likelihood_nh.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Matrix/MatrixTools.h:43,
from /<<PKGBUILDDIR>>/test/test_likelihood_nh.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Matrix/MatrixTools.h:43,
from /<<PKGBUILDDIR>>/test/test_likelihood_nh.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Matrix/MatrixTools.h:43,
from /<<PKGBUILDDIR>>/test/test_likelihood_nh.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Matrix/MatrixTools.h:43,
from /<<PKGBUILDDIR>>/test/test_likelihood_nh.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Matrix/MatrixTools.h:43,
from /<<PKGBUILDDIR>>/test/test_likelihood_nh.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Matrix/MatrixTools.h:43,
from /<<PKGBUILDDIR>>/test/test_likelihood_nh.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Matrix/MatrixTools.h:43,
from /<<PKGBUILDDIR>>/test/test_likelihood_nh.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 99%] Linking CXX executable test_likelihood_nh
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_likelihood_nh.dir/link.txt --verbose=1
/usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/test_likelihood_nh.dir/test_likelihood_nh.cpp.o -o test_likelihood_nh -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src -rdynamic ../src/libbpp-phyl.so.11.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.11.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.3.0.0
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 99%] Built target test_likelihood_nh
make -f test/CMakeFiles/test_tree_getpath.dir/build.make test/CMakeFiles/test_tree_getpath.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_tree_getpath.dir/DependInfo.cmake --color=
Scanning dependencies of target test_tree_getpath
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f test/CMakeFiles/test_tree_getpath.dir/build.make test/CMakeFiles/test_tree_getpath.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[100%] Building CXX object test/CMakeFiles/test_tree_getpath.dir/test_tree_getpath.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIE -o CMakeFiles/test_tree_getpath.dir/test_tree_getpath.cpp.o -c /<<PKGBUILDDIR>>/test/test_tree_getpath.cpp
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.h:43,
from /<<PKGBUILDDIR>>/test/test_models.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.h:43,
from /<<PKGBUILDDIR>>/test/test_models.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.h:43,
from /<<PKGBUILDDIR>>/test/test_models.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.h:43,
from /<<PKGBUILDDIR>>/test/test_models.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.h:43,
from /<<PKGBUILDDIR>>/test/test_models.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.h:43,
from /<<PKGBUILDDIR>>/test/test_models.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.h:43,
from /<<PKGBUILDDIR>>/test/test_models.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.h:43,
from /<<PKGBUILDDIR>>/test/test_models.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.h:43,
from /<<PKGBUILDDIR>>/test/test_models.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/Model/Nucleotide/GTR.h:43,
from /<<PKGBUILDDIR>>/test/test_models.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[100%] Linking CXX executable test_models
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_models.dir/link.txt --verbose=1
/usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/test_models.dir/test_models.cpp.o -o test_models -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src -rdynamic ../src/libbpp-phyl.so.11.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.11.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.3.0.0
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplate.h:44,
from /<<PKGBUILDDIR>>/test/test_tree.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplate.h:44,
from /<<PKGBUILDDIR>>/test/test_tree.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeExceptions.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/Phyl/TreeTemplate.h:44,
from /<<PKGBUILDDIR>>/test/test_tree.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[100%] Built target test_models
[100%] Linking CXX executable test_tree
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_tree.dir/link.txt --verbose=1
/usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/test_tree.dir/test_tree.cpp.o -o test_tree -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src -rdynamic ../src/libbpp-phyl.so.11.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.11.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.3.0.0
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Matrix/MatrixTools.h:43,
from /<<PKGBUILDDIR>>/test/test_simulations.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:324:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:69:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Matrix/MatrixTools.h:43,
from /<<PKGBUILDDIR>>/test/test_simulations.cpp:40:
/usr/include/c++/6/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__x.end());
^
/usr/include/c++/6/bits/vector.tcc:195:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
end(), _M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:206:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy(std::copy(__x.begin(), __x.end(), begin()),
^~~
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[100%] Built target test_tree
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Matrix/MatrixTools.h:43,
from /<<PKGBUILDDIR>>/test/test_simulations.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/vector:64:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Matrix/MatrixTools.h:43,
from /<<PKGBUILDDIR>>/test/test_simulations.cpp:40:
/usr/include/c++/6/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_M_allocate_and_copy(size_type __n,
^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h:1219:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1225:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __result,
^~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Matrix/MatrixTools.h:43,
from /<<PKGBUILDDIR>>/test/test_simulations.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Matrix/MatrixTools.h:43,
from /<<PKGBUILDDIR>>/test/test_simulations.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double]':
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:148:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:151:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(__first, __last);
^~~~~~~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Matrix/MatrixTools.h:43,
from /<<PKGBUILDDIR>>/test/test_simulations.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/6/bits/stl_uninitialized.h:304:69: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
[100%] Linking CXX executable test_tree_getpath
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_tree_getpath.dir/link.txt --verbose=1
/usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/test_tree_getpath.dir/test_tree_getpath.cpp.o -o test_tree_getpath -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src -rdynamic ../src/libbpp-phyl.so.11.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.11.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.3.0.0
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:61:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Matrix/MatrixTools.h:43,
from /<<PKGBUILDDIR>>/test/test_simulations.cpp:40:
/usr/include/c++/6/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Matrix/MatrixTools.h:43,
from /<<PKGBUILDDIR>>/test/test_simulations.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Matrix/MatrixTools.h:43,
from /<<PKGBUILDDIR>>/test/test_simulations.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
_Destroy(_ForwardIterator __first, _ForwardIterator __last)
^~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:122:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_construct.h:126:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
std::_Destroy_aux<__has_trivial_destructor(_Value_type)>::
^~~
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Matrix/MatrixTools.h:43,
from /<<PKGBUILDDIR>>/test/test_simulations.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:279:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:281:63: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Matrix/MatrixTools.h:43,
from /<<PKGBUILDDIR>>/test/test_simulations.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/6/bits/stl_iterator.h:980:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:62:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Matrix/MatrixTools.h:43,
from /<<PKGBUILDDIR>>/test/test_simulations.cpp:40:
/usr/include/c++/6/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux<true>::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__destroy(_ForwardIterator, _ForwardIterator) { }
^~~~~~~~~
/usr/include/c++/6/bits/stl_construct.h:112:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[100%] Built target test_tree_getpath
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Matrix/MatrixTools.h:43,
from /<<PKGBUILDDIR>>/test/test_simulations.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:107:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:126:41: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Matrix/MatrixTools.h:43,
from /<<PKGBUILDDIR>>/test/test_simulations.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__result));
^
In file included from /usr/include/c++/6/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Matrix/MatrixTools.h:43,
from /<<PKGBUILDDIR>>/test/test_simulations.cpp:40:
/usr/include/c++/6/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_uninitialized.h:91:9: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_uninitialized.h:93:53: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/6/bits/char_traits.h:39:0,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Matrix/MatrixTools.h:43,
from /<<PKGBUILDDIR>>/test/test_simulations.cpp:40:
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/6/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0,
from /usr/include/c++/6/bits/char_traits.h:39,
from /usr/include/c++/6/string:40,
from /usr/include/c++/6/stdexcept:39,
from /usr/include/Bpp/Exceptions.h:45,
from /usr/include/Bpp/Numeric/VectorExceptions.h:43,
from /usr/include/Bpp/Numeric/VectorTools.h:43,
from /usr/include/Bpp/Numeric/Matrix/MatrixTools.h:43,
from /<<PKGBUILDDIR>>/test/test_simulations.cpp:40:
/usr/include/c++/6/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/6/bits/stl_iterator.h:1243:5: note: parameter passing for argument of type 'std::move_iterator<double*>' will change in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[100%] Linking CXX executable test_simulations
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_simulations.dir/link.txt --verbose=1
/usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/test_simulations.dir/test_simulations.cpp.o -o test_simulations -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src -rdynamic ../src/libbpp-phyl.so.11.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.11.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.3.0.0
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[100%] Built target test_simulations
make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
/usr/bin/cmake -E cmake_progress_start /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles 0
make[1]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
dh_auto_test -a
make -j4 test ARGS\+=-j4
make[1]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
Running tests...
/usr/bin/ctest --force-new-ctest-process -j4
Test project /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf
Start 1: test_bowker
Start 2: test_detailed_simulations
Start 3: test_likelihood
Start 4: test_likelihood_clock
1/14 Test #4: test_likelihood_clock ............ Passed 1.55 sec
Start 5: test_likelihood_nh
2/14 Test #3: test_likelihood .................. Passed 4.77 sec
Start 6: test_mapping
3/14 Test #2: test_detailed_simulations ........ Passed 60.00 sec
Start 7: test_mapping_codon
4/14 Test #6: test_mapping ..................... Passed 57.84 sec
Start 8: test_models
5/14 Test #8: test_models ...................... Passed 6.19 sec
Start 9: test_nhx
6/14 Test #9: test_nhx ......................... Passed 0.15 sec
Start 10: test_parsimony
7/14 Test #10: test_parsimony ................... Passed 0.15 sec
Start 11: test_simulations
8/14 Test #1: test_bowker ...................... Passed 601.11 sec
Start 12: test_tree
9/14 Test #7: test_mapping_codon ............... Passed 625.83 sec
Start 13: test_tree_getpath
10/14 Test #13: test_tree_getpath ................ Passed 0.31 sec
Start 14: test_tree_rootat
11/14 Test #14: test_tree_rootat ................. Passed 3.11 sec
12/14 Test #12: test_tree ........................ Passed 143.26 sec
13/14 Test #11: test_simulations ................. Passed 1071.88 sec
14/14 Test #5: test_likelihood_nh ............... Passed 5891.44 sec
100% tests passed, 0 tests failed out of 14
Total Test time (real) = 5893.23 sec
make[1]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch
dh_testroot -a
dh_prep -a
dh_auto_install -a
make -j4 install DESTDIR=/<<PKGBUILDDIR>>/debian/tmp AM_UPDATE_INFO_DIR=no
make[1]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
/usr/bin/cmake -H/<<PKGBUILDDIR>> -B/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[2]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f src/CMakeFiles/bpp-phyl-shared.dir/build.make src/CMakeFiles/bpp-phyl-shared.dir/depend
make -f src/CMakeFiles/bpp-phyl-static.dir/build.make src/CMakeFiles/bpp-phyl-static.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/CMakeFiles/bpp-phyl-static.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/CMakeFiles/bpp-phyl-shared.dir/DependInfo.cmake --color=
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make -f src/CMakeFiles/bpp-phyl-shared.dir/build.make src/CMakeFiles/bpp-phyl-shared.dir/build
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f src/CMakeFiles/bpp-phyl-static.dir/build.make src/CMakeFiles/bpp-phyl-static.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
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make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'src/CMakeFiles/bpp-phyl-static.dir/build'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 46%] Built target bpp-phyl-shared
make -f test/CMakeFiles/test_parsimony.dir/build.make test/CMakeFiles/test_parsimony.dir/depend
make -f test/CMakeFiles/test_likelihood_clock.dir/build.make test/CMakeFiles/test_likelihood_clock.dir/depend
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make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_parsimony.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_tree_rootat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_likelihood_clock.dir/DependInfo.cmake --color=
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make -f test/CMakeFiles/test_mapping.dir/build.make test/CMakeFiles/test_mapping.dir/depend
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Install the project...
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "None"
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/bpp-phyl/bpp-phyl-config.cmake
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/bpp-phyl/bpp-phyl-config-version.cmake
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-phyl.a
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.11.0.0
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.11
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-phyl.so
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/AncestralStateReconstruction.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/App
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/App/PhylogeneticsApplicationTools.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/BipartitionList.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/BipartitionTools.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Distance
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Distance/BioNJ.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Distance/DistanceEstimation.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Distance/DistanceMethod.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Distance/HierarchicalClustering.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Distance/NeighborJoining.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Distance/PGMA.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Graphics
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Graphics/AbstractDendrogramPlot.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Graphics/AbstractTreeDrawing.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Graphics/CladogramPlot.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Graphics/PhylogramPlot.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Graphics/TreeDrawing.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Graphics/TreeDrawingDisplayControler.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Graphics/TreeDrawingListener.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Io
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Io/BppOFrequenciesSetFormat.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Io/BppOMultiTreeReaderFormat.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Io/BppOMultiTreeWriterFormat.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Io/BppORateDistributionFormat.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Io/BppOSubstitutionModelFormat.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Io/BppOTransitionModelFormat.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Io/BppOTreeReaderFormat.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Io/BppOTreeWriterFormat.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Io/IoDistanceMatrix.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Io/IoDistanceMatrixFactory.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Io/IoFrequenciesSet.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Io/IoFrequenciesSetFactory.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Io/IoPairedSiteLikelihoods.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Io/IoSubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Io/IoSubstitutionModelFactory.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Io/IoTree.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Io/IoTreeFactory.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Io/Newick.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Io/NexusIoTree.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Io/Nhx.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Likelihood
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/ClockTreeLikelihood.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/DRTreeLikelihood.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/DiscreteRatesAcrossSitesTreeLikelihood.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/HomogeneousTreeLikelihood.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/PseudoNewtonOptimizer.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/RASTools.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/SitePartitionTreeLikelihood.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/TreeLikelihood.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/TreeLikelihoodData.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Mapping
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Mapping/CategorySubstitutionRegister.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Mapping/DecompositionReward.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Mapping/Mapping.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Mapping/Reward.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Mapping/RewardMapping.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Mapping/RewardMappingTools.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Mapping/SubstitutionCount.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Mapping/SubstitutionMapping.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Mapping/SubstitutionMappingTools.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Mapping/SubstitutionRegister.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/AbstractBiblioMixedSubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/AbstractBiblioSubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/AbstractSubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/BinarySubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/AbstractCodonCpGSubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/AbstractCodonDistanceSubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/AbstractCodonFitnessSubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/AbstractCodonFrequenciesSubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/AbstractKroneckerCodonSubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/CodonDistanceCpGSubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/CodonDistanceSubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/CodonRateFrequenciesSubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/CodonRateSubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/CodonSubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/GY94.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/KCM.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceFrequenciesSubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceSubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/MG94.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/SENCA.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/TripletSubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/YN98.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/YNGP_M1.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/YNGP_M10.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/YNGP_M2.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/YNGP_M3.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/YNGP_M7.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/YNGP_M8.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/YNGP_M9.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/FrequenciesSet
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/FrequenciesSet/ProteinFrequenciesSet.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/FromMixtureSubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/G2001.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/KroneckerWordSubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/MixedSubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/MixedSubstitutionModelSet.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/MixtureOfASubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/MixtureOfSubstitutionModels.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Nucleotide
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Nucleotide/F84.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Nucleotide/GTR.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Nucleotide/HKY85.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Nucleotide/JCnuc.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Nucleotide/K80.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Nucleotide/L95.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Nucleotide/RN95.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Nucleotide/RN95s.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Nucleotide/SSR.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Nucleotide/T92.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Nucleotide/TN93.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Nucleotide/YpR.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Nucleotide/gBGC.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/OneChangeTransitionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Protein
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Protein/Coala.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Protein/CoalaCore.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Protein/DSO78.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Protein/JCprot.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Protein/JTT92.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Protein/LG08.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Protein/LG10_EX_EHO.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Protein/LGL08_CAT.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Protein/LLG08_EHO.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Protein/LLG08_EX2.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Protein/LLG08_EX3.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Protein/LLG08_UL2.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Protein/LLG08_UL3.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Protein/WAG01.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/RE08.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/RateDistribution
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/RateDistribution/ConstantRateDistribution.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/RateDistribution/ExponentialDiscreteRateDistribution.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/RateDistribution/GammaDiscreteRateDistribution.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/RateDistribution/GaussianDiscreteRateDistribution.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/StateMap.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/SubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/SubstitutionModelSetTools.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/TS98.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/WordSubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/SubstitutionModelSet.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/NNISearchable.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/NNITopologySearch.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Node.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/NodeTemplate.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/OptimizationTools.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Parsimony
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Parsimony/AbstractTreeParsimonyData.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Parsimony/DRTreeParsimonyData.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Parsimony/DRTreeParsimonyScore.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Parsimony/TreeParsimonyData.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Parsimony/TreeParsimonyScore.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/PatternTools.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/PhyloStatistics.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Simulation
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Simulation/DetailedSiteSimulator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Simulation/HomogeneousSequenceSimulator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Simulation/MutationProcess.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Simulation/SequenceSimulationTools.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Simulation/SequenceSimulator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Simulation/SiteSimulator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/SitePatterns.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/TopologySearch.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Tree.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/TreeExceptions.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/TreeTemplate.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/TreeTemplateTools.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/TreeTools.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/bpp-phyl/bpp-phyl-targets.cmake
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/bpp-phyl/bpp-phyl-targets-none.cmake
make[1]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_install
d-shlibmove --commit \
--multiarch \
--devunversioned \
--exclude-la \
--movedev debian/tmp/usr/include/* usr/include \
--movedev debian/tmp/usr/lib/*/cmake usr/lib/arm-linux-gnueabihf \
debian/tmp/usr/lib/*/*.so
Library package automatic movement utility
--> libbpp-core-dev package exists.
--> libbpp-seq-dev package exists.
set -e
install -d -m 755 debian/libbpp-phyl-dev/usr/lib/arm-linux-gnueabihf
install -d -m 755 debian/libbpp-phyl11/usr/lib/arm-linux-gnueabihf
mv debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-phyl.a debian/libbpp-phyl-dev/usr/lib/arm-linux-gnueabihf
mv debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-phyl.so debian/libbpp-phyl-dev/usr/lib/arm-linux-gnueabihf
mv /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.11 debian/libbpp-phyl11/usr/lib/arm-linux-gnueabihf
mv /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.11.0.0 debian/libbpp-phyl11/usr/lib/arm-linux-gnueabihf
PKGDEV=libbpp-phyl-dev
PKGSHL=libbpp-phyl11
install -d -m 755 debian/libbpp-phyl-dev/usr/include
mv debian/tmp/usr/include/Bpp debian/libbpp-phyl-dev/usr/include
install -d -m 755 debian/libbpp-phyl-dev/usr/lib/arm-linux-gnueabihf
mv debian/tmp/usr/lib/arm-linux-gnueabihf/cmake debian/libbpp-phyl-dev/usr/lib/arm-linux-gnueabihf
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installdocs -a
dh_installchangelogs -a
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
dh_fixperms -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/libbpp-phyl11/usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.11.0.0 found in none of the libraries
dh_installdeb -a
dh_gencontrol -a
dpkg-gencontrol: warning: package libbpp-phyl-dev: unused substitution variable ${devlibs:Depends}
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'libbpp-phyl-dev' in '../libbpp-phyl-dev_2.3.1-9_armhf.deb'.
dpkg-deb: building package 'libbpp-phyl11-dbgsym' in '../libbpp-phyl11-dbgsym_2.3.1-9_armhf.deb'.
dpkg-deb: building package 'libbpp-phyl11' in '../libbpp-phyl11_2.3.1-9_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../libbpp-phyl_2.3.1-9_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build libbpp-phyl-2.3.1
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2017-07-24T13:52:07Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
libbpp-phyl_2.3.1-9_armhf.changes:
----------------------------------
Format: 1.8
Date: Mon, 17 Jul 2017 09:24:23 +0200
Source: libbpp-phyl
Binary: libbpp-phyl-dev libbpp-phyl11
Architecture: armhf
Version: 2.3.1-9
Distribution: buster-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Julien Dutheil <julien.dutheil@univ-montp2.fr>
Description:
libbpp-phyl-dev - Bio++ Phylogenetic library development files
libbpp-phyl11 - Bio++ Phylogenetic library
Closes: 866365
Changes:
libbpp-phyl (2.3.1-9) unstable; urgency=medium
.
* Further increased time out limit for unit tests.
Closes: 866365
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Checksums-Sha256:
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Files:
cd98d36aeafaef50bf99a09d30416bc5 6020212 libdevel optional libbpp-phyl-dev_2.3.1-9_armhf.deb
f001726a9934049bb30d7dae7173aff7 337310 debug extra libbpp-phyl11-dbgsym_2.3.1-9_armhf.deb
f17fd34174f74ef77cb6cd240a6ae1d8 1320170 libs optional libbpp-phyl11_2.3.1-9_armhf.deb
ed86eb14d798ce896e5d8e84d55f4593 6094 science optional libbpp-phyl_2.3.1-9_armhf.buildinfo
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| Package contents |
+------------------------------------------------------------------------------+
libbpp-phyl-dev_2.3.1-9_armhf.deb
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new debian package, version 2.0.
size 6020212 bytes: control archive=7067 bytes.
865 bytes, 19 lines control
18881 bytes, 216 lines md5sums
Package: libbpp-phyl-dev
Source: libbpp-phyl
Version: 2.3.1-9
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 93100
Depends: libbpp-phyl11 (= 2.3.1-9), libbpp-seq-dev (>= 2.3.1)
Section: libdevel
Priority: optional
Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page
Description: Bio++ Phylogenetic library development files
Bio++ is a set of C++ libraries for Bioinformatics, including sequence
analysis, phylogenetics, molecular evolution and population genetics.
Bio++ is Object Oriented and is designed to be both easy to use and
computer efficient. Bio++ intends to help programmers to write computer
expensive programs, by providing them a set of re-usable tools.
.
This package contains the static library and the header files ofthe
Bio++ classes for phylogenetics.
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-rw-r--r-- root/root 4228 2017-06-07 16:41 ./usr/include/Bpp/Phyl/Model/Protein/LLG08_EHO.h
-rw-r--r-- root/root 3989 2017-06-07 16:41 ./usr/include/Bpp/Phyl/Model/Protein/LLG08_EX2.h
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-rw-r--r-- root/root 4973 2017-06-07 16:41 ./usr/include/Bpp/Phyl/Model/Protein/WAG01.h
-rw-r--r-- root/root 12890 2017-06-07 16:41 ./usr/include/Bpp/Phyl/Model/RE08.h
drwxr-xr-x root/root 0 2017-07-17 07:24 ./usr/include/Bpp/Phyl/Model/RateDistribution/
-rw-r--r-- root/root 2322 2017-06-07 16:41 ./usr/include/Bpp/Phyl/Model/RateDistribution/ConstantRateDistribution.h
-rw-r--r-- root/root 2474 2017-06-07 16:41 ./usr/include/Bpp/Phyl/Model/RateDistribution/ExponentialDiscreteRateDistribution.h
-rw-r--r-- root/root 2444 2017-06-07 16:41 ./usr/include/Bpp/Phyl/Model/RateDistribution/GammaDiscreteRateDistribution.h
-rw-r--r-- root/root 2459 2017-06-07 16:41 ./usr/include/Bpp/Phyl/Model/RateDistribution/GaussianDiscreteRateDistribution.h
-rw-r--r-- root/root 6872 2017-06-07 16:41 ./usr/include/Bpp/Phyl/Model/StateMap.h
-rw-r--r-- root/root 18359 2017-06-07 16:41 ./usr/include/Bpp/Phyl/Model/SubstitutionModel.h
-rw-r--r-- root/root 18866 2017-07-17 07:24 ./usr/include/Bpp/Phyl/Model/SubstitutionModelSet.h
-rw-r--r-- root/root 3716 2017-06-07 16:41 ./usr/include/Bpp/Phyl/Model/SubstitutionModelSetTools.h
-rw-r--r-- root/root 4149 2017-06-07 16:41 ./usr/include/Bpp/Phyl/Model/TS98.h
-rw-r--r-- root/root 4485 2017-06-07 16:41 ./usr/include/Bpp/Phyl/Model/WordSubstitutionModel.h
-rw-r--r-- root/root 4492 2017-06-07 16:41 ./usr/include/Bpp/Phyl/NNISearchable.h
-rw-r--r-- root/root 5665 2017-06-07 16:41 ./usr/include/Bpp/Phyl/NNITopologySearch.h
-rw-r--r-- root/root 19632 2017-06-07 16:41 ./usr/include/Bpp/Phyl/Node.h
-rw-r--r-- root/root 6492 2017-06-07 16:41 ./usr/include/Bpp/Phyl/NodeTemplate.h
-rw-r--r-- root/root 34477 2017-06-07 16:41 ./usr/include/Bpp/Phyl/OptimizationTools.h
drwxr-xr-x root/root 0 2017-07-17 07:24 ./usr/include/Bpp/Phyl/Parsimony/
-rw-r--r-- root/root 3942 2017-06-07 16:41 ./usr/include/Bpp/Phyl/Parsimony/AbstractTreeParsimonyData.h
-rw-r--r-- root/root 3851 2017-06-07 16:41 ./usr/include/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.h
-rw-r--r-- root/root 9618 2017-06-07 16:41 ./usr/include/Bpp/Phyl/Parsimony/DRTreeParsimonyData.h
-rw-r--r-- root/root 6287 2017-06-07 16:41 ./usr/include/Bpp/Phyl/Parsimony/DRTreeParsimonyScore.h
-rw-r--r-- root/root 3483 2017-06-07 16:41 ./usr/include/Bpp/Phyl/Parsimony/TreeParsimonyData.h
-rw-r--r-- root/root 3241 2017-06-07 16:41 ./usr/include/Bpp/Phyl/Parsimony/TreeParsimonyScore.h
-rw-r--r-- root/root 3792 2017-06-07 16:41 ./usr/include/Bpp/Phyl/PatternTools.h
-rw-r--r-- root/root 3691 2017-06-07 16:41 ./usr/include/Bpp/Phyl/PhyloStatistics.h
drwxr-xr-x root/root 0 2017-07-17 07:24 ./usr/include/Bpp/Phyl/Simulation/
-rw-r--r-- root/root 8235 2017-06-07 16:41 ./usr/include/Bpp/Phyl/Simulation/DetailedSiteSimulator.h
-rw-r--r-- root/root 2583 2017-06-07 16:41 ./usr/include/Bpp/Phyl/Simulation/HomogeneousSequenceSimulator.h
-rw-r--r-- root/root 12789 2017-06-07 16:41 ./usr/include/Bpp/Phyl/Simulation/MutationProcess.h
-rw-r--r-- root/root 10895 2017-06-07 16:41 ./usr/include/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h
-rw-r--r-- root/root 4213 2017-06-07 16:41 ./usr/include/Bpp/Phyl/Simulation/SequenceSimulationTools.h
-rw-r--r-- root/root 2363 2017-06-07 16:41 ./usr/include/Bpp/Phyl/Simulation/SequenceSimulator.h
-rw-r--r-- root/root 2515 2017-06-07 16:41 ./usr/include/Bpp/Phyl/Simulation/SiteSimulator.h
-rw-r--r-- root/root 5513 2017-06-07 16:41 ./usr/include/Bpp/Phyl/SitePatterns.h
-rw-r--r-- root/root 4190 2017-06-07 16:41 ./usr/include/Bpp/Phyl/TopologySearch.h
-rw-r--r-- root/root 15366 2017-06-07 16:41 ./usr/include/Bpp/Phyl/Tree.h
-rw-r--r-- root/root 7695 2017-06-07 16:41 ./usr/include/Bpp/Phyl/TreeExceptions.h
-rw-r--r-- root/root 20203 2017-06-07 16:41 ./usr/include/Bpp/Phyl/TreeTemplate.h
-rw-r--r-- root/root 44287 2017-06-07 16:41 ./usr/include/Bpp/Phyl/TreeTemplateTools.h
-rw-r--r-- root/root 29830 2017-06-07 16:41 ./usr/include/Bpp/Phyl/TreeTools.h
drwxr-xr-x root/root 0 2017-07-17 07:24 ./usr/lib/
drwxr-xr-x root/root 0 2017-07-17 07:24 ./usr/lib/arm-linux-gnueabihf/
drwxr-xr-x root/root 0 2017-07-17 07:24 ./usr/lib/arm-linux-gnueabihf/cmake/
drwxr-xr-x root/root 0 2017-07-17 07:24 ./usr/lib/arm-linux-gnueabihf/cmake/bpp-phyl/
-rw-r--r-- root/root 1610 2017-07-17 07:24 ./usr/lib/arm-linux-gnueabihf/cmake/bpp-phyl/bpp-phyl-config-version.cmake
-rw-r--r-- root/root 2311 2017-07-17 07:24 ./usr/lib/arm-linux-gnueabihf/cmake/bpp-phyl/bpp-phyl-config.cmake
-rw-r--r-- root/root 1515 2017-07-17 07:24 ./usr/lib/arm-linux-gnueabihf/cmake/bpp-phyl/bpp-phyl-targets-none.cmake
-rw-r--r-- root/root 3939 2017-07-17 07:24 ./usr/lib/arm-linux-gnueabihf/cmake/bpp-phyl/bpp-phyl-targets.cmake
-rw-r--r-- root/root 93724664 2017-07-17 07:24 ./usr/lib/arm-linux-gnueabihf/libbpp-phyl.a
lrwxrwxrwx root/root 0 2017-07-17 07:24 ./usr/lib/arm-linux-gnueabihf/libbpp-phyl.so -> libbpp-phyl.so.11
drwxr-xr-x root/root 0 2017-07-17 07:24 ./usr/share/
drwxr-xr-x root/root 0 2017-07-17 07:24 ./usr/share/doc/
drwxr-xr-x root/root 0 2017-07-17 07:24 ./usr/share/doc/libbpp-phyl-dev/
-rw-r--r-- root/root 1609 2017-07-17 07:24 ./usr/share/doc/libbpp-phyl-dev/changelog.Debian.gz
-rw-r--r-- root/root 7452 2017-06-07 16:41 ./usr/share/doc/libbpp-phyl-dev/changelog.gz
-rw-r--r-- root/root 3116 2017-06-13 14:02 ./usr/share/doc/libbpp-phyl-dev/copyright
libbpp-phyl11-dbgsym_2.3.1-9_armhf.deb
--------------------------------------
new debian package, version 2.0.
size 337310 bytes: control archive=521 bytes.
470 bytes, 14 lines control
106 bytes, 1 lines md5sums
Package: libbpp-phyl11-dbgsym
Source: libbpp-phyl
Version: 2.3.1-9
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 2730
Depends: libbpp-phyl11 (= 2.3.1-9)
Section: debug
Priority: extra
Multi-Arch: same
Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page
Description: Debug symbols for libbpp-phyl11
Build-Ids: f055edc38db2cf72d29a69c16d7265f44fadf8e7
drwxr-xr-x root/root 0 2017-07-17 07:24 ./
drwxr-xr-x root/root 0 2017-07-17 07:24 ./usr/
drwxr-xr-x root/root 0 2017-07-17 07:24 ./usr/lib/
drwxr-xr-x root/root 0 2017-07-17 07:24 ./usr/lib/debug/
drwxr-xr-x root/root 0 2017-07-17 07:24 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2017-07-17 07:24 ./usr/lib/debug/.build-id/f0/
-rw-r--r-- root/root 2784956 2017-07-17 07:24 ./usr/lib/debug/.build-id/f0/55edc38db2cf72d29a69c16d7265f44fadf8e7.debug
drwxr-xr-x root/root 0 2017-07-17 07:24 ./usr/share/
drwxr-xr-x root/root 0 2017-07-17 07:24 ./usr/share/doc/
lrwxrwxrwx root/root 0 2017-07-17 07:24 ./usr/share/doc/libbpp-phyl11-dbgsym -> libbpp-phyl11
libbpp-phyl11_2.3.1-9_armhf.deb
-------------------------------
new debian package, version 2.0.
size 1320170 bytes: control archive=930 bytes.
845 bytes, 19 lines control
313 bytes, 4 lines md5sums
29 bytes, 1 lines shlibs
60 bytes, 2 lines triggers
Package: libbpp-phyl11
Source: libbpp-phyl
Version: 2.3.1-9
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 9799
Depends: libbpp-core3, libbpp-seq11, libc6 (>= 2.4), libgcc1 (>= 1:3.5), libstdc++6 (>= 5.2)
Section: libs
Priority: optional
Multi-Arch: same
Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page
Description: Bio++ Phylogenetic library
Bio++ is a set of C++ libraries for Bioinformatics, including sequence
analysis, phylogenetics, molecular evolution and population genetics.
Bio++ is Object Oriented and is designed to be both easy to use and
computer efficient. Bio++ intends to help programmers to write computer
expensive programs, by providing them a set of re-usable tools.
.
This package contains the Bio++ classes for phylogenetics.
drwxr-xr-x root/root 0 2017-07-17 07:24 ./
drwxr-xr-x root/root 0 2017-07-17 07:24 ./usr/
drwxr-xr-x root/root 0 2017-07-17 07:24 ./usr/lib/
drwxr-xr-x root/root 0 2017-07-17 07:24 ./usr/lib/arm-linux-gnueabihf/
lrwxrwxrwx root/root 0 2017-07-17 07:24 ./usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.11 -> libbpp-phyl.so.11.0.0
-rw-r--r-- root/root 10008036 2017-07-17 07:24 ./usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.11.0.0
drwxr-xr-x root/root 0 2017-07-17 07:24 ./usr/share/
drwxr-xr-x root/root 0 2017-07-17 07:24 ./usr/share/doc/
drwxr-xr-x root/root 0 2017-07-17 07:24 ./usr/share/doc/libbpp-phyl11/
-rw-r--r-- root/root 1609 2017-07-17 07:24 ./usr/share/doc/libbpp-phyl11/changelog.Debian.gz
-rw-r--r-- root/root 7452 2017-06-07 16:41 ./usr/share/doc/libbpp-phyl11/changelog.gz
-rw-r--r-- root/root 3116 2017-06-13 14:02 ./usr/share/doc/libbpp-phyl11/copyright
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 408860
Build-Time: 8361
Distribution: buster-staging
Host Architecture: armhf
Install-Time: 446
Job: libbpp-phyl_2.3.1-9
Machine Architecture: armhf
Package: libbpp-phyl
Package-Time: 8855
Source-Version: 2.3.1-9
Space: 408860
Status: successful
Version: 2.3.1-9
--------------------------------------------------------------------------------
Finished at 2017-07-24T13:52:07Z
Build needed 02:27:35, 408860k disc space