Build log for libbpp-phyl (2.2.0-1) on armhf

libbpp-phyl → 2.2.0-1 → armhf → 2016-05-03 18:44:20

sbuild (Debian sbuild) 0.66.0 (04 Oct 2015) on bm-wb-03

+==============================================================================+
| libbpp-phyl 2.2.0-1 (armhf)                                03 May 2016 16:21 |
+==============================================================================+

Package: libbpp-phyl
Version: 2.2.0-1
Source Version: 2.2.0-1
Distribution: stretch-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf

I: NOTICE: Log filtering will replace 'build/libbpp-phyl-j3VF4O/libbpp-phyl-2.2.0' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/libbpp-phyl-j3VF4O' with '<<BUILDDIR>>'
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/stretch-staging-armhf-sbuild-60b27591-0a5e-4a6e-bde1-06df2164cfba' with '<<CHROOT>>'

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| Update chroot                                                                |
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Get:1 http://172.17.0.1/private stretch-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private stretch-staging/main Sources [8942 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf Packages [11.0 MB]
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Check APT
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Download source files with APT
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Reading package lists...
NOTICE: 'libbpp-phyl' packaging is maintained in the 'Git' version control system at:
https://anonscm.debian.org/git/debian-med/libbpp-phyl.git
Please use:
git clone https://anonscm.debian.org/git/debian-med/libbpp-phyl.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 569 kB of source archives.
Get:1 http://172.17.0.1/private stretch-staging/main libbpp-phyl 2.2.0-1 (dsc) [2122 B]
Get:2 http://172.17.0.1/private stretch-staging/main libbpp-phyl 2.2.0-1 (tar) [563 kB]
Get:3 http://172.17.0.1/private stretch-staging/main libbpp-phyl 2.2.0-1 (diff) [4344 B]
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Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-QkkoaM/apt_archive/sbuild-build-depends-core-dummy.deb'.
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| Install core build dependencies (apt-based resolver)                         |
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Installing build dependencies
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The following NEW packages will be installed:
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0 upgraded, 1 newly installed, 0 to remove and 44 not upgraded.
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Merged Build-Depends: debhelper (>= 9), cmake, d-shlibs, libbpp-seq-dev (>= 2.2.0)
Filtered Build-Depends: debhelper (>= 9), cmake, d-shlibs, libbpp-seq-dev (>= 2.2.0)
dpkg-deb: building package 'sbuild-build-depends-libbpp-phyl-dummy' in '/<<BUILDDIR>>/resolver-1HRyZK/apt_archive/sbuild-build-depends-libbpp-phyl-dummy.deb'.
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Get:3 file:/<<BUILDDIR>>/resolver-1HRyZK/apt_archive ./ Release.gpg [299 B]
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+------------------------------------------------------------------------------+
| Install libbpp-phyl build dependencies (apt-based resolver)                  |
+------------------------------------------------------------------------------+

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data
  d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism file gettext
  gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13
  libbpp-core-dev libbpp-core2v5 libbpp-seq-dev libbpp-seq9v5 libbsd0
  libcroco3 libcurl3 libexpat1 libffi6 libfile-stripnondeterminism-perl
  libglib2.0-0 libgnutls30 libgssapi-krb5-2 libhogweed4 libicu55 libidn11
  libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0
  libldap-2.4-2 liblzo2-2 libmagic1 libnettle6 libnghttp2-14 libp11-kit0
  libpipeline1 librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh2-1
  libssl1.0.2 libtasn1-6 libtimedate-perl libtool libunistring0 libxml2 m4
  man-db po-debconf
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
  vacation codeblocks eclipse ninja-build dh-make gettext-doc libasprintf-dev
  libgettextpo-dev groff lrzip gnutls-bin krb5-doc krb5-user libtool-doc
  gfortran | fortran95-compiler gcj-jdk less www-browser libmail-box-perl
Recommended packages:
  curl | wget | lynx-cur ca-certificates libglib2.0-data shared-mime-info
  xdg-user-dirs krb5-locales libsasl2-modules libltdl-dev xml-core
  libmail-sendmail-perl
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data
  d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism file gettext
  gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13
  libbpp-core-dev libbpp-core2v5 libbpp-seq-dev libbpp-seq9v5 libbsd0
  libcroco3 libcurl3 libexpat1 libffi6 libfile-stripnondeterminism-perl
  libglib2.0-0 libgnutls30 libgssapi-krb5-2 libhogweed4 libicu55 libidn11
  libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0
  libldap-2.4-2 liblzo2-2 libmagic1 libnettle6 libnghttp2-14 libp11-kit0
  libpipeline1 librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh2-1
  libssl1.0.2 libtasn1-6 libtimedate-perl libtool libunistring0 libxml2 m4
  man-db po-debconf sbuild-build-depends-libbpp-phyl-dummy
0 upgraded, 61 newly installed, 0 to remove and 44 not upgraded.
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Get:1 file:/<<BUILDDIR>>/resolver-1HRyZK/apt_archive ./ sbuild-build-depends-libbpp-phyl-dummy 0.invalid.0 [792 B]
Get:2 http://172.17.0.1/private stretch-staging/main armhf groff-base armhf 1.22.3-7 [1083 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf libbsd0 armhf 0.8.3-1 [89.0 kB]
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Get:5 http://172.17.0.1/private stretch-staging/main armhf libpipeline1 armhf 1.4.1-2 [23.7 kB]
Get:6 http://172.17.0.1/private stretch-staging/main armhf man-db armhf 2.7.5-1 [975 kB]
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Get:9 http://172.17.0.1/private stretch-staging/main armhf libarchive13 armhf 3.1.2-11+b1 [230 kB]
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Get:14 http://172.17.0.1/private stretch-staging/main armhf libldap-2.4-2 armhf 2.4.42+dfsg-2+rpi1+b2 [198 kB]
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Get:16 http://172.17.0.1/private stretch-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-1 [54.2 kB]
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Get:29 http://172.17.0.1/private stretch-staging/main armhf autoconf all 2.69-10 [338 kB]
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Get:37 http://172.17.0.1/private stretch-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:38 http://172.17.0.1/private stretch-staging/main armhf po-debconf all 1.0.19 [249 kB]
Get:39 http://172.17.0.1/private stretch-staging/main armhf libarchive-zip-perl all 1.57-1 [95.1 kB]
Get:40 http://172.17.0.1/private stretch-staging/main armhf libfile-stripnondeterminism-perl all 0.016-1 [11.9 kB]
Get:41 http://172.17.0.1/private stretch-staging/main armhf libtimedate-perl all 2.3000-2 [42.2 kB]
Get:42 http://172.17.0.1/private stretch-staging/main armhf dh-strip-nondeterminism all 0.016-1 [6998 B]
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Get:45 http://172.17.0.1/private stretch-staging/main armhf debhelper all 9.20160403 [800 kB]
Get:46 http://172.17.0.1/private stretch-staging/main armhf libbpp-core2v5 armhf 2.2.0-2 [440 kB]
Get:47 http://172.17.0.1/private stretch-staging/main armhf libbpp-core-dev armhf 2.2.0-2 [1526 kB]
Get:48 http://172.17.0.1/private stretch-staging/main armhf libbpp-seq9v5 armhf 2.2.0-1 [401 kB]
Get:49 http://172.17.0.1/private stretch-staging/main armhf libbpp-seq-dev armhf 2.2.0-1 [1524 kB]
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-- Creating generic include file: /usr/include/Bpp.all
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Setting up libbpp-seq9v5:armhf (2.2.0-1) ...
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-- Creating generic include file: /usr/include/Bpp.all
-- Creating generic include file: /usr/include/Bpp/App.all
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-- Creating generic include file: /usr/include/Bpp/Numeric/Stat.all
-- Creating generic include file: /usr/include/Bpp/Numeric/Stat/Mva.all
-- Creating generic include file: /usr/include/Bpp/Seq.all
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-- Creating generic include file: /usr/include/Bpp/Seq/App.all
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-- Creating generic include file: /usr/include/Bpp/Seq/GeneticCode.all
-- Creating generic include file: /usr/include/Bpp/Seq/Io.all
-- Creating generic include file: /usr/include/Bpp/Text.all
-- Creating generic include file: /usr/include/Bpp/Utils.all
Setting up dh-autoreconf (12) ...
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Setting up dh-strip-nondeterminism (0.016-1) ...
Processing triggers for libc-bin (2.22-5) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 3.19.0-trunk-armmp armhf (armv7l)
Toolchain package versions: binutils_2.26-8 dpkg-dev_1.18.4 g++-5_5.3.1-14 gcc-5_5.3.1-14 libc6-dev_2.22-5 libstdc++-5-dev_5.3.1-14 libstdc++6_5.3.1-14 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch
Package versions: adduser_3.114 apt_1.2.10 autoconf_2.69-10 automake_1:1.15-4 autopoint_0.19.7-2 autotools-dev_20150820.1 base-files_9.6+rpi1 base-passwd_3.5.39 bash_4.3-14 binutils_2.26-8 bsdmainutils_9.0.10 bsdutils_1:2.27.1-6 build-essential_11.7 bzip2_1.0.6-8 cmake_3.5.2-1 cmake-data_3.5.2-1 console-setup_1.141 console-setup-linux_1.141 coreutils_8.25-2 cpio_2.11+dfsg-5 cpp_4:5.3.1-1+rpi1 cpp-5_5.3.1-14 d-shlibs_0.74 dash_0.5.8-2.2 debconf_1.5.59 debfoster_2.7-2 debhelper_9.20160403 debianutils_4.7 dh-autoreconf_12 dh-strip-nondeterminism_0.016-1 diffutils_1:3.3-3 dmsetup_2:1.02.120-1 dpkg_1.18.4 dpkg-dev_1.18.4 e2fslibs_1.43~WIP.2016.03.15-2 e2fsprogs_1.43~WIP.2016.03.15-2 fakeroot_1.20.2-1 file_1:5.25-2 findutils_4.6.0+git+20160126-2 g++_4:5.3.1-1+rpi1 g++-5_5.3.1-14 gcc_4:5.3.1-1+rpi1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.3-12 gcc-5_5.3.1-14 gcc-5-base_5.3.1-14 gettext_0.19.7-2 gettext-base_0.19.7-2 gnupg_1.4.20-5 gpgv_1.4.20-5 grep_2.22-1 groff-base_1.22.3-7 gzip_1.6-5 hostname_3.17 ifupdown_0.8.10 init_1.29 init-system-helpers_1.29 initscripts_2.88dsf-59.3 insserv_1.14.0-5.3 intltool-debian_0.35.0+20060710.4 iproute2_4.3.0-1 kbd_2.0.3-2 keyboard-configuration_1.141 klibc-utils_2.0.4-8+rpi1 kmod_22-1.1 libacl1_2.2.52-3 libapparmor1_2.10-4 libapt-pkg5.0_1.2.10 libarchive-zip-perl_1.57-1 libarchive13_3.1.2-11+b1 libasan2_5.3.1-14 libatm1_1:2.5.1-1.5 libatomic1_5.3.1-14 libattr1_1:2.4.47-2 libaudit-common_1:2.4.5-1 libaudit1_1:2.4.5-1 libblkid1_2.27.1-6 libbpp-core-dev_2.2.0-2 libbpp-core2v5_2.2.0-2 libbpp-seq-dev_2.2.0-1 libbpp-seq9v5_2.2.0-1 libbsd0_0.8.3-1 libbz2-1.0_1.0.6-8 libc-bin_2.22-5 libc-dev-bin_2.22-5 libc6_2.22-5 libc6-dev_2.22-5 libcap2_1:2.24-12 libcap2-bin_1:2.24-12 libcc1-0_5.3.1-14 libcomerr2_1.43~WIP.2016.03.15-2 libcroco3_0.6.11-1 libcryptsetup4_2:1.7.0-2 libcurl3_7.47.0-1 libdb5.3_5.3.28-11 libdbus-1-3_1.10.8-1 libdebconfclient0_0.208 libdevmapper1.02.1_2:1.02.120-1 libdpkg-perl_1.18.4 libdrm2_2.4.67-1 libexpat1_2.1.1-1 libfakeroot_1.20.2-1 libfdisk1_2.27.1-6 libffi6_3.2.1-4 libfile-stripnondeterminism-perl_0.016-1 libgc1c2_1:7.4.2-7.4 libgcc-5-dev_5.3.1-14 libgcc1_1:5.3.1-14 libgcrypt20_1.6.5-2 libgdbm3_1.8.3-13.1 libglib2.0-0_2.48.0-1 libgmp10_2:6.1.0+dfsg-2 libgnutls30_3.4.11-4 libgomp1_5.3.1-14 libgpg-error0_1.21-2 libgssapi-krb5-2_1.13.2+dfsg-5 libhogweed4_3.2-1 libicu55_55.1-7 libidn11_1.32-3 libisl15_0.16.1-1 libjsoncpp1_1.7.2-1 libk5crypto3_1.13.2+dfsg-5 libkeyutils1_1.5.9-8 libklibc_2.0.4-8+rpi1 libkmod2_22-1.1 libkrb5-3_1.13.2+dfsg-5 libkrb5support0_1.13.2+dfsg-5 libldap-2.4-2_2.4.42+dfsg-2+rpi1+b2 liblocale-gettext-perl_1.07-1+b1 liblz4-1_0.0~r131-2 liblzma5_5.1.1alpha+20120614-2.1 liblzo2-2_2.08-1.2 libmagic1_1:5.25-2 libmount1_2.27.1-6 libmpc3_1.0.3-1 libmpfr4_3.1.4-1 libncurses5_6.0+20160319-1 libncursesw5_6.0+20160319-1 libnettle6_3.2-1 libnghttp2-14_1.10.0-1 libp11-kit0_0.23.2-3 libpam-modules_1.1.8-3.2 libpam-modules-bin_1.1.8-3.2 libpam-runtime_1.1.8-3.2 libpam0g_1.1.8-3.2 libpcre3_2:8.38-3.1 libperl5.22_5.22.1-9 libpipeline1_1.4.1-2 libplymouth4_0.9.2-3 libpng12-0_1.2.54-6 libprocps5_2:3.3.11-3 libreadline6_6.3-8+b3 librtmp1_2.4+20151223.gitfa8646d.1-1 libsasl2-2_2.1.26.dfsg1-15 libsasl2-modules-db_2.1.26.dfsg1-15 libseccomp2_2.3.0-1 libselinux1_2.4-3 libsemanage-common_2.4-3 libsemanage1_2.4-3 libsepol1_2.4-2 libsigsegv2_2.10-5 libsmartcols1_2.27.1-6 libss2_1.43~WIP.2016.03.15-2 libssh2-1_1.5.0-2.1 libssl1.0.2_1.0.2g-2 libstdc++-5-dev_5.3.1-14 libstdc++6_5.3.1-14 libsystemd0_229-4 libtasn1-6_4.8-1 libtimedate-perl_2.3000-2 libtinfo5_6.0+20160319-1 libtool_2.4.6-0.1 libubsan0_5.3.1-14 libudev1_229-4 libunistring0_0.9.3-5.2 libusb-0.1-4_2:0.1.12-28 libustr-1.0-1_1.0.4-5 libuuid1_2.27.1-6 libxml2_2.9.3+dfsg1-1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch login_1:4.2-3.1 lsb-base_9.20160110+rpi1 m4_1.4.17-5 make_4.1-9 makedev_2.3.1-93 man-db_2.7.5-1 manpages_4.05-1 mawk_1.3.3-17 mount_2.27.1-6 multiarch-support_2.22-5 ncurses-base_6.0+20160319-1 ncurses-bin_6.0+20160319-1 netbase_5.3 passwd_1:4.2-3.1 patch_2.7.5-1 perl_5.22.1-9 perl-base_5.22.1-9 perl-modules-5.22_5.22.1-9 po-debconf_1.0.19 procps_2:3.3.11-3 psmisc_22.21-2.1 raspbian-archive-keyring_20120528.2 readline-common_6.3-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-libbpp-phyl-dummy_0.invalid.0 sed_4.2.2-7.1 sensible-utils_0.0.9 startpar_0.59-3 systemd_229-4 systemd-sysv_229-4 sysv-rc_2.88dsf-59.3 sysvinit-utils_2.88dsf-59.3 tar_1.28-2.1 tzdata_2016c-0+deb8u1 udev_229-4 util-linux_2.27.1-6 xkb-data_2.17-1 xz-utils_5.1.1alpha+20120614-2.1 zlib1g_1:1.2.8.dfsg-2+b1

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made Thu Apr 21 12:35:28 2016 UTC using RSA key ID D1C646D1
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./libbpp-phyl_2.2.0-1.dsc
dpkg-source: info: extracting libbpp-phyl in libbpp-phyl-2.2.0
dpkg-source: info: unpacking libbpp-phyl_2.2.0.orig.tar.gz
dpkg-source: info: unpacking libbpp-phyl_2.2.0-1.debian.tar.xz

Check disc space
----------------

Sufficient free space for build

User Environment
----------------

DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=stretch-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=stretch-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=stretch-staging-armhf-sbuild-60b27591-0a5e-4a6e-bde1-06df2164cfba
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd

dpkg-buildpackage
-----------------

dpkg-buildpackage: source package libbpp-phyl
dpkg-buildpackage: source version 2.2.0-1
dpkg-buildpackage: source distribution unstable
 dpkg-source --before-build libbpp-phyl-2.2.0
dpkg-buildpackage: host architecture armhf
 fakeroot debian/rules clean
dh clean
   dh_testdir
   dh_auto_clean
   dh_clean
 debian/rules build-arch
dh build-arch
   dh_testdir -a
   dh_update_autotools_config -a
   dh_auto_configure -a
	cmake .. -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var
-- The CXX compiler identification is GNU 5.3.1
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Library bpp-seq found here:
   includes : /usr/include
   libraries: /usr/lib/arm-linux-gnueabihf/libbpp-seq.so
-- Library bpp-core found here:
   includes : /usr/include
   libraries: /usr/lib/arm-linux-gnueabihf/libbpp-core.so
-- Could NOT find Doxygen (missing:  DOXYGEN_EXECUTABLE) 
-- Configuring done
-- Generating done
CMake Warning:
  Manually-specified variables were not used by the project:

    CMAKE_INSTALL_LOCALSTATEDIR
    CMAKE_INSTALL_SYSCONFDIR


-- Build files have been written to: /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf
   dh_auto_build -a
	make -j1
make[1]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
/usr/bin/cmake -H/<<PKGBUILDDIR>> -B/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0
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# For the moment ignore:
#  5/12 Test  #5: test_parsimony ...................***Failed    0.01 sec
# Newick::read: failed to read from stream
#
# 92% tests passed, 1 tests failed out of 12
dh_auto_test || true
	make -j1 test ARGS\+=-j1
make[2]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
Running tests...
/usr/bin/ctest --force-new-ctest-process -j1
Test project /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf
      Start  1: test_tree
 1/12 Test  #1: test_tree ........................   Passed  134.80 sec
      Start  2: test_models
 2/12 Test  #2: test_models ......................   Passed    5.94 sec
      Start  3: test_detailed_simulations
 3/12 Test  #3: test_detailed_simulations ........   Passed   57.45 sec
      Start  4: test_simulations
 4/12 Test  #4: test_simulations .................   Passed  1136.88 sec
      Start  5: test_parsimony
 5/12 Test  #5: test_parsimony ...................***Failed    0.08 sec
Newick::read: failed to read from stream

      Start  6: test_likelihood
 6/12 Test  #6: test_likelihood ..................   Passed    5.11 sec
      Start  7: test_likelihood_nh
 7/12 Test  #7: test_likelihood_nh ...............***Timeout 1500.02 sec
Theta0 set to 0.839592
Theta1 set to 0.207331
Theta2 set to 0.0414936
Theta3 set to 0.251201
Theta4 set to 0.840898
Theta5 set to 0.678877
Theta6 set to 0.925711
Theta7 set to 0.415481
Theta8 set to 0.733181
Theta9 set to 0.45867
Initializing data structure............: Done.
Number of distinct sites...............: 383
Initializing data structure............: Done.
Number of distinct sites...............: 383

Optimizing... / 1
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44: 5541.45	61: 5541.42
0.791735	0.778178
0.192256	0.19162
0.0645572	0.0655258
0.381817	0.387715
0.805996	0.84407
0.711304	0.710711
0.944148	0.944182
0.444948	0.444872
0.82027	0.822147
0.0606602	0.131054
Initializing data structure............: Done.
Number of distinct sites...............: 393
Initializing data structure............: Done.
Number of distinct sites...............: 393

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155: 5563.02	128: 5563.02
0.999999	0.999999
0.250628	0.250753
0.016632	0.0163937
0.0308419	0.0305541
0.970856	0.972087
0.807985	0.807935
0.949637	0.949584
0.455176	0.454201
0.793354	0.793148
1e-06	1e-06
Initializing data structure............: Done.
Number of distinct sites...............: 398
Initializing data structure............: Done.
Number of distinct sites...............: 398

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68: 5666.25	60: 5666.28
0.89186	0.881709
0.157666	0.15736
0.0138476	0.0145679
0.254139	0.243433
0.922284	0.925638
0.668287	0.668296
0.924932	0.924914
0.425202	0.425033
0.675063	0.674786
0.525618	0.517489
Initializing data structure............: Done.
Number of distinct sites...............: 375
Initializing data structure............: Done.
Number of distinct sites...............: 375

Optimizing... / 1
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Optimizing... - 66
Optimizing... \ 67

      Start  8: test_likelihood_clock
 8/12 Test  #8: test_likelihood_clock ............   Passed    5.19 sec
      Start  9: test_mapping
 9/12 Test  #9: test_mapping .....................   Passed   23.78 sec
      Start 10: test_mapping_codon
10/12 Test #10: test_mapping_codon ...............   Passed  612.32 sec
      Start 11: test_nhx
11/12 Test #11: test_nhx .........................   Passed    0.10 sec
      Start 12: test_bowker
12/12 Test #12: test_bowker ......................   Passed  590.24 sec

83% tests passed, 2 tests failed out of 12

Total Test time (real) = 4071.94 sec

The following tests FAILED:
	  5 - test_parsimony (Failed)
	  7 - test_likelihood_nh (Timeout)
Errors while running CTest
Makefile:130: recipe for target 'test' failed
make[2]: *** [test] Error 8
make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
dh_auto_test: make -j1 test ARGS+=-j1 returned exit code 2
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
 fakeroot debian/rules binary-arch
dh binary-arch
   dh_testroot -a
   dh_prep -a
   dh_auto_install -a
	make -j1 install DESTDIR=/<<PKGBUILDDIR>>/debian/tmp AM_UPDATE_INFO_DIR=no
make[1]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
/usr/bin/cmake -H/<<PKGBUILDDIR>> -B/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[2]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f src/CMakeFiles/bppphyl-shared.dir/build.make src/CMakeFiles/bppphyl-shared.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/CMakeFiles/bppphyl-shared.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f src/CMakeFiles/bppphyl-shared.dir/build.make src/CMakeFiles/bppphyl-shared.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'src/CMakeFiles/bppphyl-shared.dir/build'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 46%] Built target bppphyl-shared
make -f src/CMakeFiles/bppphyl-static.dir/build.make src/CMakeFiles/bppphyl-static.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/CMakeFiles/bppphyl-static.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f src/CMakeFiles/bppphyl-static.dir/build.make src/CMakeFiles/bppphyl-static.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'src/CMakeFiles/bppphyl-static.dir/build'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 92%] Built target bppphyl-static
make -f test/CMakeFiles/test_nhx.dir/build.make test/CMakeFiles/test_nhx.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_nhx.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f test/CMakeFiles/test_nhx.dir/build.make test/CMakeFiles/test_nhx.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'test/CMakeFiles/test_nhx.dir/build'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 93%] Built target test_nhx
make -f test/CMakeFiles/test_simulations.dir/build.make test/CMakeFiles/test_simulations.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_simulations.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f test/CMakeFiles/test_simulations.dir/build.make test/CMakeFiles/test_simulations.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
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make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 94%] Built target test_simulations
make -f test/CMakeFiles/test_bowker.dir/build.make test/CMakeFiles/test_bowker.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_bowker.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f test/CMakeFiles/test_bowker.dir/build.make test/CMakeFiles/test_bowker.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
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make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 95%] Built target test_bowker
make -f test/CMakeFiles/test_detailed_simulations.dir/build.make test/CMakeFiles/test_detailed_simulations.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_detailed_simulations.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f test/CMakeFiles/test_detailed_simulations.dir/build.make test/CMakeFiles/test_detailed_simulations.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'test/CMakeFiles/test_detailed_simulations.dir/build'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 95%] Built target test_detailed_simulations
make -f test/CMakeFiles/test_tree.dir/build.make test/CMakeFiles/test_tree.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_tree.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f test/CMakeFiles/test_tree.dir/build.make test/CMakeFiles/test_tree.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'test/CMakeFiles/test_tree.dir/build'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 96%] Built target test_tree
make -f test/CMakeFiles/test_mapping_codon.dir/build.make test/CMakeFiles/test_mapping_codon.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_mapping_codon.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f test/CMakeFiles/test_mapping_codon.dir/build.make test/CMakeFiles/test_mapping_codon.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
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[ 96%] Built target test_mapping_codon
make -f test/CMakeFiles/test_parsimony.dir/build.make test/CMakeFiles/test_parsimony.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_parsimony.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f test/CMakeFiles/test_parsimony.dir/build.make test/CMakeFiles/test_parsimony.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'test/CMakeFiles/test_parsimony.dir/build'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 96%] Built target test_parsimony
make -f test/CMakeFiles/test_likelihood_nh.dir/build.make test/CMakeFiles/test_likelihood_nh.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_likelihood_nh.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f test/CMakeFiles/test_likelihood_nh.dir/build.make test/CMakeFiles/test_likelihood_nh.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
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make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 97%] Built target test_likelihood_nh
make -f test/CMakeFiles/test_models.dir/build.make test/CMakeFiles/test_models.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_models.dir/DependInfo.cmake --color=
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make -f test/CMakeFiles/test_models.dir/build.make test/CMakeFiles/test_models.dir/build
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make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 98%] Built target test_models
make -f test/CMakeFiles/test_likelihood_clock.dir/build.make test/CMakeFiles/test_likelihood_clock.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_likelihood_clock.dir/DependInfo.cmake --color=
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make -f test/CMakeFiles/test_likelihood_clock.dir/build.make test/CMakeFiles/test_likelihood_clock.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
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make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 98%] Built target test_likelihood_clock
make -f test/CMakeFiles/test_likelihood.dir/build.make test/CMakeFiles/test_likelihood.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_likelihood.dir/DependInfo.cmake --color=
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make -f test/CMakeFiles/test_likelihood.dir/build.make test/CMakeFiles/test_likelihood.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
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make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 99%] Built target test_likelihood
make -f test/CMakeFiles/test_mapping.dir/build.make test/CMakeFiles/test_mapping.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_mapping.dir/DependInfo.cmake --color=
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make -f test/CMakeFiles/test_mapping.dir/build.make test/CMakeFiles/test_mapping.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'test/CMakeFiles/test_mapping.dir/build'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[100%] Built target test_mapping
make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
/usr/bin/cmake -E cmake_progress_start /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles 0
make -f CMakeFiles/Makefile2 preinstall
make[2]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[2]: Nothing to be done for 'preinstall'.
make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
Install the project...
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "None"
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/libbpp-phyl.a
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/libbpp-phyl.so.9.1.3
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/libbpp-phyl.so.9
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/libbpp-phyl.so
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/AncestralStateReconstruction.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/App
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/App/PhylogeneticsApplicationTools.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/BipartitionList.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/BipartitionTools.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Distance
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Distance/BioNJ.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Distance/DistanceEstimation.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Distance/DistanceMethod.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Distance/HierarchicalClustering.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Distance/NeighborJoining.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Distance/PGMA.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Graphics
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Graphics/AbstractDendrogramPlot.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Graphics/AbstractTreeDrawing.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Graphics/CladogramPlot.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Graphics/PhylogramPlot.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Graphics/TreeDrawing.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Graphics/TreeDrawingDisplayControler.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Graphics/TreeDrawingListener.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Io
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Io/BppOFrequenciesSetFormat.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Io/BppORateDistributionFormat.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Io/BppOSubstitutionModelFormat.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Io/IoDistanceMatrix.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Io/IoDistanceMatrixFactory.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Io/IoFrequenciesSet.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Io/IoFrequenciesSetFactory.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Io/IoPairedSiteLikelihoods.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Io/IoSubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Io/IoSubstitutionModelFactory.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Io/IoTree.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Io/IoTreeFactory.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Io/Newick.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Io/NexusIoTree.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Io/Nhx.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Likelihood
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/ClockTreeLikelihood.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/DiscreteRatesAcrossSitesTreeLikelihood.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/DRTreeLikelihood.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/HomogeneousTreeLikelihood.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/PseudoNewtonOptimizer.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/RASTools.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/SitePartitionTreeLikelihood.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/TreeLikelihood.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/TreeLikelihoodData.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Mapping
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Mapping/DecompositionReward.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Mapping/Mapping.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Mapping/Reward.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Mapping/RewardMapping.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Mapping/RewardMappingTools.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Mapping/SubstitutionCount.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Mapping/SubstitutionMapping.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Mapping/SubstitutionMappingTools.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Mapping/SubstitutionRegister.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/AbstractBiblioMixedSubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/AbstractBiblioSubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/AbstractSubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/BinarySubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/AbstractCodonDistanceSubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/AbstractCodonFitnessSubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/AbstractCodonFrequenciesSubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/CodonDistanceFitnessPhaseFrequenciesSubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/CodonDistanceSubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/CodonRateFrequenciesSubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/CodonRateSubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/CodonSubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/GY94.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/MG94.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/TripletSubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/YN98.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/YNGKP_M1.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/YNGKP_M2.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/YNGKP_M3.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/YNGKP_M7.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/YNGKP_M8.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/FrequenciesSet
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/FrequenciesSet/ProteinFrequenciesSet.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/G2001.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/MixedSubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/MixedSubstitutionModelSet.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/MixtureOfASubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/MixtureOfSubstitutionModels.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Nucleotide
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Nucleotide/F84.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Nucleotide/gBGC.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Nucleotide/GTR.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Nucleotide/HKY85.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Nucleotide/JCnuc.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Nucleotide/K80.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Nucleotide/L95.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Nucleotide/RN95.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Nucleotide/RN95s.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Nucleotide/SSR.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Nucleotide/T92.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Nucleotide/TN93.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Nucleotide/YpR.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Protein
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Protein/Coala.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Protein/CoalaCore.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Protein/DSO78.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Protein/JCprot.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Protein/JTT92.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Protein/LG08.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Protein/LG10_EX_EHO.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Protein/LGL08_CAT.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Protein/LLG08_EHO.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Protein/LLG08_EX2.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Protein/LLG08_EX3.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Protein/LLG08_UL2.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Protein/LLG08_UL3.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/Protein/WAG01.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/RateDistribution
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/RateDistribution/ConstantRateDistribution.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/RateDistribution/ExponentialDiscreteRateDistribution.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/RateDistribution/GammaDiscreteRateDistribution.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/RateDistribution/GaussianDiscreteRateDistribution.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/RateDistributionFactory.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/RE08.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/StateMap.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/SubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/SubstitutionModelFactory.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/SubstitutionModelSet.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/SubstitutionModelSetTools.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/TS98.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Model/WordSubstitutionModel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/NNISearchable.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/NNITopologySearch.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Node.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/NodeTemplate.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/OptimizationTools.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Parsimony
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Parsimony/AbstractTreeParsimonyData.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Parsimony/DRTreeParsimonyData.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Parsimony/DRTreeParsimonyScore.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Parsimony/TreeParsimonyData.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Parsimony/TreeParsimonyScore.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/PatternTools.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/PhyloStatistics.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Simulation
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Simulation/DetailedSiteSimulator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Simulation/HomogeneousSequenceSimulator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Simulation/MutationProcess.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Simulation/SequenceSimulationTools.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Simulation/SequenceSimulator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Simulation/SiteSimulator.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/SitePatterns.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/TopologySearch.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/Tree.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/TreeExceptions.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/TreeTemplate.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/TreeTemplateTools.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Phyl/TreeTools.h
-- Creating generic include file: /usr/include/Bpp.all
-- Creating generic include file: /usr/include/Bpp/App.all
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-- Creating generic include file: /usr/include/Bpp/Seq.all
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/<<PKGBUILDDIR>>/genIncludes.sh: line 30: /usr/include/Bpp/Seq/Io.all: Permission denied
rm: cannot remove '/usr/include/Bpp/Seq.all': Permission denied
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-- Creating generic include file: /usr/include/Bpp/Text.all
rm: cannot remove '/usr/include/Bpp/Text.all': Permission denied
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-- Creating generic include file: /usr/include/Bpp/Utils.all
rm: cannot remove '/usr/include/Bpp/Utils.all': Permission denied
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make[1]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
   debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_install
d-shlibmove --commit \
	    --multiarch \
	    --v5 \
	    --devunversioned \
	    --override s/libbpp-core2-dev/libbpp-core-dev/ \
	    --override s/libbpp-seq9-dev/libbpp-seq-dev/ \
	    --exclude-la \
                    --movedev debian/tmp/usr/include/* usr/include \
                    debian/tmp/usr/lib/*.so
Library package automatic movement utility
 --> libbpp-core-dev package exists.
 --> libbpp-seq-dev package exists.
set -e
install -d -m 755 debian/libbpp-phyl-dev/usr/lib/arm-linux-gnueabihf
install -d -m 755 debian/libbpp-phyl9v5/usr/lib/arm-linux-gnueabihf
mv debian/tmp/usr/lib/libbpp-phyl.a debian/libbpp-phyl-dev/usr/lib/arm-linux-gnueabihf
mv debian/tmp/usr/lib/libbpp-phyl.so debian/libbpp-phyl-dev/usr/lib/arm-linux-gnueabihf
mv /<<PKGBUILDDIR>>/debian/tmp/usr/lib/libbpp-phyl.so.9 debian/libbpp-phyl9v5/usr/lib/arm-linux-gnueabihf
mv /<<PKGBUILDDIR>>/debian/tmp/usr/lib/libbpp-phyl.so.9.1.3 debian/libbpp-phyl9v5/usr/lib/arm-linux-gnueabihf
PKGDEV=libbpp-phyl-dev
PKGSHL=libbpp-phyl9v5
install -d -m 755 debian/libbpp-phyl-dev/usr/include
mv debian/tmp/usr/include/Bpp debian/libbpp-phyl-dev/usr/include
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_installdocs -a
   dh_installchangelogs -a
   dh_perl -a
   dh_link -a
   dh_strip_nondeterminism -a
   dh_compress -a
   dh_fixperms -a
   dh_strip -a
   dh_makeshlibs -a
   dh_shlibdeps -a
dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/libbpp-phyl9v5/usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.9.1.3 found in none of the libraries
   dh_installdeb -a
   dh_gencontrol -a
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: package libbpp-phyl-dev: unused substitution variable ${devlibs:Depends}
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
   dh_md5sums -a
   dh_builddeb -a
dpkg-deb: building package 'libbpp-phyl9v5-dbgsym' in '../libbpp-phyl9v5-dbgsym_2.2.0-1_armhf.deb'.
dpkg-deb: building package 'libbpp-phyl-dev' in '../libbpp-phyl-dev_2.2.0-1_armhf.deb'.
dpkg-deb: building package 'libbpp-phyl9v5' in '../libbpp-phyl9v5_2.2.0-1_armhf.deb'.
 dpkg-genchanges -B -mRaspbian wandboard test autobuilder <root@raspbian.org> >../libbpp-phyl_2.2.0-1_armhf.changes
dpkg-genchanges: warning: package libbpp-phyl9v5-dbgsym listed in files list but not in control info
dpkg-genchanges: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build libbpp-phyl-2.2.0
dpkg-buildpackage: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 20160503-1841

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Post Build Chroot                                                            |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


libbpp-phyl_2.2.0-1_armhf.changes:
----------------------------------

Format: 1.8
Date: Thu, 21 Apr 2016 14:16:41 +0200
Source: libbpp-phyl
Binary: libbpp-phyl-dev libbpp-phyl9v5
Architecture: armhf
Version: 2.2.0-1
Distribution: stretch-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
 libbpp-phyl-dev - Bio++ Phylogenetic library development files
 libbpp-phyl9v5 - Bio++ Phylogenetic library
Closes: 791094
Changes:
 libbpp-phyl (2.2.0-1) unstable; urgency=medium
 .
   * New upstream version
   * Moved packaging to Git
   * Better description
   * Team maintenance in Debian Med team
   * cme fix dpkg-control
   * Source package section: science
   * Add watch file
   * debhelper 9
   * DEP5
   * short dh rules file using d-shlibs
   * Library transition
     Closes: #791094
Checksums-Sha1:
 aeb05d75ee85f4edbccec2fd397e49b8b0377b16 5245342 libbpp-phyl-dev_2.2.0-1_armhf.deb
 9cc9400832b01ee22fb5cbd431306c3151e50c00 290758 libbpp-phyl9v5-dbgsym_2.2.0-1_armhf.deb
 d4b7205b10198975dc4d6ac0cc8f1f58b1bbc978 1222602 libbpp-phyl9v5_2.2.0-1_armhf.deb
Checksums-Sha256:
 4b8c3639bad78f71aa3c68abda50529c5ce45b28435505bb89c701950853b4b9 5245342 libbpp-phyl-dev_2.2.0-1_armhf.deb
 6b026c8cee42c252543c56d139b71ae04b7609c2c542e7af5404ecf4ea6120f0 290758 libbpp-phyl9v5-dbgsym_2.2.0-1_armhf.deb
 9de7418c62798ecabf04a6643d9d8e246876b9a331fb1abb561b98897f18a42e 1222602 libbpp-phyl9v5_2.2.0-1_armhf.deb
Files:
 8eb6cb82446d9f0a3c2464409bfcc4d7 5245342 libdevel optional libbpp-phyl-dev_2.2.0-1_armhf.deb
 4178b294e4d11df3eb406041351fe91a 290758 debug extra libbpp-phyl9v5-dbgsym_2.2.0-1_armhf.deb
 877bc13420a2f0d58cc75cc99bb3de47 1222602 libs optional libbpp-phyl9v5_2.2.0-1_armhf.deb

+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


libbpp-phyl-dev_2.2.0-1_armhf.deb
---------------------------------

 new debian package, version 2.0.
 size 5245342 bytes: control archive=7197 bytes.
     866 bytes,    19 lines      control              
   16928 bytes,   195 lines      md5sums              
    1063 bytes,    57 lines   *  postinst             #!/bin/bash
    1134 bytes,    59 lines   *  postrm               #!/bin/bash
     644 bytes,    41 lines   *  prerm                #!/bin/bash
 Package: libbpp-phyl-dev
 Source: libbpp-phyl
 Version: 2.2.0-1
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 80223
 Depends: libbpp-phyl9v5 (= 2.2.0-1), libbpp-seq-dev (>= 2.2.0)
 Section: libdevel
 Priority: optional
 Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page
 Description: Bio++ Phylogenetic library development files
  Bio++ is a set of C++ libraries for Bioinformatics, including sequence
  analysis, phylogenetics, molecular evolution and population genetics.
  Bio++ is Object Oriented and is designed to be both easy to use and
  computer efficient. Bio++ intends to help programmers to write computer
  expensive programs, by providing them a set of re-usable tools.
  .
  This package contains the static library and the header files ofthe
  Bio++ classes for phylogenetics.

drwxr-xr-x root/root         0 2016-05-03 18:35 ./
drwxr-xr-x root/root         0 2016-05-03 18:35 ./usr/
drwxr-xr-x root/root         0 2016-05-03 18:35 ./usr/include/
drwxr-xr-x root/root         0 2016-05-03 18:35 ./usr/include/Bpp/
drwxr-xr-x root/root         0 2016-05-03 18:35 ./usr/include/Bpp/Phyl/
-rw-r--r-- root/root      3681 2015-03-13 16:31 ./usr/include/Bpp/Phyl/AncestralStateReconstruction.h
drwxr-xr-x root/root         0 2016-05-03 18:35 ./usr/include/Bpp/Phyl/App/
-rw-r--r-- root/root     30035 2015-03-13 16:45 ./usr/include/Bpp/Phyl/App/PhylogeneticsApplicationTools.h
-rw-r--r-- root/root      8234 2015-03-13 16:31 ./usr/include/Bpp/Phyl/BipartitionList.h
-rw-r--r-- root/root      6542 2015-03-13 16:31 ./usr/include/Bpp/Phyl/BipartitionTools.h
drwxr-xr-x root/root         0 2016-05-03 18:35 ./usr/include/Bpp/Phyl/Distance/
-rw-r--r-- root/root      7705 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h
-rw-r--r-- root/root      3916 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Distance/BioNJ.h
-rw-r--r-- root/root     19649 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Distance/DistanceEstimation.h
-rw-r--r-- root/root      3371 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Distance/DistanceMethod.h
-rw-r--r-- root/root      4014 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Distance/HierarchicalClustering.h
-rw-r--r-- root/root      4217 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Distance/NeighborJoining.h
-rw-r--r-- root/root      4114 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Distance/PGMA.h
drwxr-xr-x root/root         0 2016-05-03 18:35 ./usr/include/Bpp/Phyl/Graphics/
-rw-r--r-- root/root      3320 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Graphics/AbstractDendrogramPlot.h
-rw-r--r-- root/root     12655 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Graphics/AbstractTreeDrawing.h
-rw-r--r-- root/root      3441 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Graphics/CladogramPlot.h
-rw-r--r-- root/root      3369 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Graphics/PhylogramPlot.h
-rw-r--r-- root/root     11871 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Graphics/TreeDrawing.h
-rw-r--r-- root/root      6675 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Graphics/TreeDrawingDisplayControler.h
-rw-r--r-- root/root      8939 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Graphics/TreeDrawingListener.h
drwxr-xr-x root/root         0 2016-05-03 18:35 ./usr/include/Bpp/Phyl/Io/
-rw-r--r-- root/root      4510 2015-03-13 16:45 ./usr/include/Bpp/Phyl/Io/BppOFrequenciesSetFormat.h
-rw-r--r-- root/root      3192 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Io/BppORateDistributionFormat.h
-rw-r--r-- root/root      7402 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Io/BppOSubstitutionModelFormat.h
-rw-r--r-- root/root      5033 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Io/IoDistanceMatrix.h
-rw-r--r-- root/root      3614 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Io/IoDistanceMatrixFactory.h
-rw-r--r-- root/root      4252 2015-03-13 16:45 ./usr/include/Bpp/Phyl/Io/IoFrequenciesSet.h
-rw-r--r-- root/root      3269 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Io/IoFrequenciesSetFactory.h
-rw-r--r-- root/root      4350 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Io/IoPairedSiteLikelihoods.h
-rw-r--r-- root/root      4601 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Io/IoSubstitutionModel.h
-rw-r--r-- root/root      3327 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Io/IoSubstitutionModelFactory.h
-rw-r--r-- root/root      7646 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Io/IoTree.h
-rw-r--r-- root/root      3073 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Io/IoTreeFactory.h
-rw-r--r-- root/root      6013 2015-03-13 16:45 ./usr/include/Bpp/Phyl/Io/Newick.h
-rw-r--r-- root/root      4643 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Io/NexusIoTree.h
-rw-r--r-- root/root      8577 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Io/Nhx.h
-rw-r--r-- root/root      3104 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.h
drwxr-xr-x root/root         0 2016-05-03 18:35 ./usr/include/Bpp/Phyl/Likelihood/
-rw-r--r-- root/root      5213 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h
-rw-r--r-- root/root      9338 2015-03-13 16:45 ./usr/include/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h
-rw-r--r-- root/root     10196 2015-03-13 16:45 ./usr/include/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h
-rw-r--r-- root/root     10241 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h
-rw-r--r-- root/root      4829 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h
-rw-r--r-- root/root      2889 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Likelihood/ClockTreeLikelihood.h
-rw-r--r-- root/root     14645 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h
-rw-r--r-- root/root     10921 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.h
-rw-r--r-- root/root      7438 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h
-rw-r--r-- root/root     12342 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h
-rw-r--r-- root/root     12712 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h
-rw-r--r-- root/root      3974 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Likelihood/DRTreeLikelihood.h
-rw-r--r-- root/root      3282 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.h
-rw-r--r-- root/root      7512 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Likelihood/DiscreteRatesAcrossSitesTreeLikelihood.h
-rw-r--r-- root/root      4137 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.h
-rw-r--r-- root/root      3425 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Likelihood/HomogeneousTreeLikelihood.h
-rw-r--r-- root/root      7237 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h
-rw-r--r-- root/root      8650 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h
-rw-r--r-- root/root      4650 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h
-rw-r--r-- root/root      6274 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.h
-rw-r--r-- root/root      4328 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Likelihood/PseudoNewtonOptimizer.h
-rw-r--r-- root/root      2576 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Likelihood/RASTools.h
-rw-r--r-- root/root      6494 2015-03-13 16:45 ./usr/include/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.h
-rw-r--r-- root/root      7398 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h
-rw-r--r-- root/root     11173 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h
-rw-r--r-- root/root     10214 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.h
-rw-r--r-- root/root     11557 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h
-rw-r--r-- root/root      3353 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Likelihood/SitePartitionTreeLikelihood.h
-rw-r--r-- root/root     14077 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Likelihood/TreeLikelihood.h
-rw-r--r-- root/root      4380 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Likelihood/TreeLikelihoodData.h
-rw-r--r-- root/root      4622 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h
drwxr-xr-x root/root         0 2016-05-03 18:35 ./usr/include/Bpp/Phyl/Mapping/
-rw-r--r-- root/root      4547 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Mapping/DecompositionReward.h
-rw-r--r-- root/root      5160 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.h
-rw-r--r-- root/root      4603 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.h
-rw-r--r-- root/root      7224 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Mapping/Mapping.h
-rw-r--r-- root/root      6678 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h
-rw-r--r-- root/root      4222 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.h
-rw-r--r-- root/root      5460 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h
-rw-r--r-- root/root      6663 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h
-rw-r--r-- root/root      6574 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Mapping/Reward.h
-rw-r--r-- root/root      3288 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Mapping/RewardMapping.h
-rw-r--r-- root/root      4863 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Mapping/RewardMappingTools.h
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drwxr-xr-x root/root         0 2016-05-03 18:35 ./usr/include/Bpp/Phyl/Model/Protein/
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-rw-r--r-- root/root     19632 2015-03-13 16:31 ./usr/include/Bpp/Phyl/Node.h
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drwxr-xr-x root/root         0 2016-05-03 18:35 ./usr/include/Bpp/Phyl/Parsimony/
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drwxr-xr-x root/root         0 2016-05-03 18:35 ./usr/include/Bpp/Phyl/Simulation/
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-rw-r--r-- root/root      4220 2015-03-13 16:31 ./usr/include/Bpp/Phyl/TopologySearch.h
-rw-r--r-- root/root     15365 2015-03-13 16:45 ./usr/include/Bpp/Phyl/Tree.h
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-rw-r--r-- root/root     20618 2015-03-13 16:45 ./usr/include/Bpp/Phyl/TreeTemplate.h
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-rw-r--r-- root/root     29830 2015-03-13 16:31 ./usr/include/Bpp/Phyl/TreeTools.h
drwxr-xr-x root/root         0 2016-05-03 18:35 ./usr/lib/
drwxr-xr-x root/root         0 2016-05-03 18:35 ./usr/lib/arm-linux-gnueabihf/
-rw-r--r-- root/root  80668426 2016-05-03 18:35 ./usr/lib/arm-linux-gnueabihf/libbpp-phyl.a
lrwxrwxrwx root/root         0 2016-05-03 18:35 ./usr/lib/arm-linux-gnueabihf/libbpp-phyl.so -> libbpp-phyl.so.9
drwxr-xr-x root/root         0 2016-05-03 18:35 ./usr/share/
drwxr-xr-x root/root         0 2016-05-03 18:35 ./usr/share/doc/
drwxr-xr-x root/root         0 2016-05-03 18:35 ./usr/share/doc/libbpp-phyl-dev/
-rw-r--r-- root/root      1041 2016-04-21 12:17 ./usr/share/doc/libbpp-phyl-dev/changelog.Debian.gz
-rw-r--r-- root/root      7275 2015-03-13 16:45 ./usr/share/doc/libbpp-phyl-dev/changelog.gz
-rw-r--r-- root/root      3116 2016-04-21 12:17 ./usr/share/doc/libbpp-phyl-dev/copyright


libbpp-phyl9v5-dbgsym_2.2.0-1_armhf.deb
---------------------------------------

 new debian package, version 2.0.
 size 290758 bytes: control archive=525 bytes.
     473 bytes,    14 lines      control              
     106 bytes,     1 lines      md5sums              
 Package: libbpp-phyl9v5-dbgsym
 Source: libbpp-phyl
 Version: 2.2.0-1
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 2335
 Depends: libbpp-phyl9v5 (= 2.2.0-1)
 Section: debug
 Priority: extra
 Multi-Arch: same
 Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page
 Description: Debug symbols for libbpp-phyl9v5
 Auto-Built-Package: debug-symbols
 Build-Ids: 153f2c0213b8eb951ca151bd3b10fbded8c5640b

drwxr-xr-x root/root         0 2016-05-03 18:36 ./
drwxr-xr-x root/root         0 2016-05-03 18:35 ./usr/
drwxr-xr-x root/root         0 2016-05-03 18:35 ./usr/lib/
drwxr-xr-x root/root         0 2016-05-03 18:35 ./usr/lib/debug/
drwxr-xr-x root/root         0 2016-05-03 18:35 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2016-05-03 18:35 ./usr/lib/debug/.build-id/15/
-rw-r--r-- root/root   2380432 2016-05-03 18:35 ./usr/lib/debug/.build-id/15/3f2c0213b8eb951ca151bd3b10fbded8c5640b.debug
drwxr-xr-x root/root         0 2016-05-03 18:35 ./usr/share/
drwxr-xr-x root/root         0 2016-05-03 18:35 ./usr/share/doc/
lrwxrwxrwx root/root         0 2016-05-03 18:35 ./usr/share/doc/libbpp-phyl9v5-dbgsym -> libbpp-phyl9v5


libbpp-phyl9v5_2.2.0-1_armhf.deb
--------------------------------

 new debian package, version 2.0.
 size 1222602 bytes: control archive=954 bytes.
     896 bytes,    21 lines      control              
     315 bytes,     4 lines      md5sums              
      29 bytes,     1 lines      shlibs               
      60 bytes,     2 lines      triggers             
 Package: libbpp-phyl9v5
 Source: libbpp-phyl
 Version: 2.2.0-1
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 8804
 Depends: libbpp-core2v5, libbpp-seq9v5, libc6 (>= 2.4), libgcc1 (>= 1:4.0), libstdc++6 (>= 5.2)
 Conflicts: libbpp-phyl9
 Replaces: libbpp-phyl9
 Section: libs
 Priority: optional
 Multi-Arch: same
 Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page
 Description: Bio++ Phylogenetic library
  Bio++ is a set of C++ libraries for Bioinformatics, including sequence
  analysis, phylogenetics, molecular evolution and population genetics.
  Bio++ is Object Oriented and is designed to be both easy to use and
  computer efficient. Bio++ intends to help programmers to write computer
  expensive programs, by providing them a set of re-usable tools.
  .
  This package contains the Bio++ classes for phylogenetics.

drwxr-xr-x root/root         0 2016-05-03 18:35 ./
drwxr-xr-x root/root         0 2016-05-03 18:35 ./usr/
drwxr-xr-x root/root         0 2016-05-03 18:35 ./usr/lib/
drwxr-xr-x root/root         0 2016-05-03 18:35 ./usr/lib/arm-linux-gnueabihf/
lrwxrwxrwx root/root         0 2016-05-03 18:35 ./usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.9 -> libbpp-phyl.so.9.1.3
-rw-r--r-- root/root   8989664 2016-05-03 18:35 ./usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.9.1.3
drwxr-xr-x root/root         0 2016-05-03 18:35 ./usr/share/
drwxr-xr-x root/root         0 2016-05-03 18:35 ./usr/share/doc/
drwxr-xr-x root/root         0 2016-05-03 18:35 ./usr/share/doc/libbpp-phyl9v5/
-rw-r--r-- root/root      1041 2016-04-21 12:17 ./usr/share/doc/libbpp-phyl9v5/changelog.Debian.gz
-rw-r--r-- root/root      7275 2015-03-13 16:45 ./usr/share/doc/libbpp-phyl9v5/changelog.gz
-rw-r--r-- root/root      3116 2016-04-21 12:17 ./usr/share/doc/libbpp-phyl9v5/copyright


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| Post Build                                                                   |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use

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| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: armhf
Build-Space: 354112
Build-Time: 8057
Distribution: stretch-staging
Host Architecture: armhf
Install-Time: 282
Job: libbpp-phyl_2.2.0-1
Machine Architecture: armhf
Package: libbpp-phyl
Package-Time: 8380
Source-Version: 2.2.0-1
Space: 354112
Status: successful
Version: 2.2.0-1
--------------------------------------------------------------------------------
Finished at 20160503-1841
Build needed 02:19:40, 354112k disc space
Raspbian Package Auto-Building

Build log for libbpp-phyl (2.2.0-1) on armhf
