libbiod →
0.1.0-4 →
armhf → 2018-03-17 18:36:14
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-01
+==============================================================================+
| libbiod 0.1.0-4 (armhf) Sat, 17 Mar 2018 18:30:49 +0000 |
+==============================================================================+
Package: libbiod
Version: 0.1.0-4
Source Version: 0.1.0-4
Distribution: buster-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/buster-staging-armhf-sbuild-859d046f-629c-47bc-ac84-7cf036a407c7' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private buster-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private buster-staging/main Sources [10.6 MB]
Get:3 http://172.17.0.1/private buster-staging/main armhf Packages [12.4 MB]
Fetched 23.1 MB in 9s (2639 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'libbiod' packaging is maintained in the 'Git' version control system at:
https://anonscm.debian.org/git/debian-med/libbiod.git
Please use:
git clone https://anonscm.debian.org/git/debian-med/libbiod.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 2424 kB of source archives.
Get:1 http://172.17.0.1/private buster-staging/main libbiod 0.1.0-4 (dsc) [2069 B]
Get:2 http://172.17.0.1/private buster-staging/main libbiod 0.1.0-4 (tar) [2401 kB]
Get:3 http://172.17.0.1/private buster-staging/main libbiod 0.1.0-4 (diff) [21.4 kB]
Fetched 2424 kB in 0s (6243 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/libbiod-SuK8Vg/libbiod-0.1.0' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/libbiod-SuK8Vg' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-y6DApv/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-y6DApv/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-y6DApv/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-y6DApv/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-y6DApv/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-y6DApv/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-y6DApv/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-y6DApv/apt_archive ./ Packages [430 B]
Fetched 2106 B in 0s (10.7 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates dbus dbus-user-session e2fsprogs-l10n libexpat1
libnss-systemd libpam-systemd libsasl2-modules libssl1.1 openssl
systemd-sysv
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-y6DApv/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
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Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 15656 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 10.4), ldc, meson (>= 0.40), pkg-config, libundead-dev (>= 1.0.7), zlib1g-dev
Filtered Build-Depends: debhelper (>= 10.4), ldc, meson (>= 0.40), pkg-config, libundead-dev (>= 1.0.7), zlib1g-dev
dpkg-deb: building package 'sbuild-build-depends-libbiod-dummy' in '/<<BUILDDIR>>/resolver-y6DApv/apt_archive/sbuild-build-depends-libbiod-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-libbiod-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-y6DApv/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-y6DApv/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-y6DApv/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-y6DApv/apt_archive ./ Sources [531 B]
Get:5 copy:/<<BUILDDIR>>/resolver-y6DApv/apt_archive ./ Packages [611 B]
Fetched 2475 B in 0s (12.5 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install libbiod build dependencies (apt-based resolver)
-------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates dbus dbus-user-session e2fsprogs-l10n libnss-systemd
libpam-systemd libsasl2-modules openssl systemd-sysv
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-python dh-strip-nondeterminism file gettext gettext-base
groff-base intltool-debian ldc libarchive-zip-perl libbsd0 libcroco3
libedit2 libfile-stripnondeterminism-perl libglib2.0-0 libicu57 libllvm5.0
libmagic-mgc libmagic1 libmpdec2 libphobos2-ldc-dev libphobos2-ldc76
libpipeline1 libpython3-stdlib libpython3.6-minimal libpython3.6-stdlib
libsigsegv2 libtimedate-perl libtool libundead-dev libundead0 libxml2 m4
man-db meson mime-support ninja-build pkg-config po-debconf python3
python3-distutils python3-lib2to3 python3-minimal python3.6
python3.6-minimal zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation dh-make dwz gettext-doc libasprintf-dev libgettextpo-dev groff
libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less
www-browser libmail-box-perl python3-doc python3-tk python3-venv
python3.6-venv python3.6-doc binfmt-support
Recommended packages:
curl | wget | lynx-cur libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-python dh-strip-nondeterminism file gettext gettext-base
groff-base intltool-debian ldc libarchive-zip-perl libbsd0 libcroco3
libedit2 libfile-stripnondeterminism-perl libglib2.0-0 libicu57 libllvm5.0
libmagic-mgc libmagic1 libmpdec2 libphobos2-ldc-dev libphobos2-ldc76
libpipeline1 libpython3-stdlib libpython3.6-minimal libpython3.6-stdlib
libsigsegv2 libtimedate-perl libtool libundead-dev libundead0 libxml2 m4
man-db meson mime-support ninja-build pkg-config po-debconf python3
python3-distutils python3-lib2to3 python3-minimal python3.6
python3.6-minimal sbuild-build-depends-libbiod-dummy zlib1g-dev
0 upgraded, 53 newly installed, 0 to remove and 0 not upgraded.
Need to get 27.2 MB/50.8 MB of archives.
After this operation, 235 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-y6DApv/apt_archive ./ sbuild-build-depends-libbiod-dummy 0.invalid.0 [900 B]
Get:2 http://172.17.0.1/private buster-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:3 http://172.17.0.1/private buster-staging/main armhf groff-base armhf 1.22.3-10 [1005 kB]
Get:4 http://172.17.0.1/private buster-staging/main armhf libpipeline1 armhf 1.5.0-1 [24.6 kB]
Get:5 http://172.17.0.1/private buster-staging/main armhf man-db armhf 2.8.2-1 [1145 kB]
Get:6 http://172.17.0.1/private buster-staging/main armhf libpython3.6-minimal armhf 3.6.4-4 [565 kB]
Get:7 http://172.17.0.1/private buster-staging/main armhf python3.6-minimal armhf 3.6.4-4 [1234 kB]
Get:8 http://172.17.0.1/private buster-staging/main armhf libpython3.6-stdlib armhf 3.6.4-4 [1584 kB]
Get:9 http://172.17.0.1/private buster-staging/main armhf python3-lib2to3 all 3.6.4-4 [78.8 kB]
Get:10 http://172.17.0.1/private buster-staging/main armhf python3-distutils all 3.6.4-4 [147 kB]
Get:11 http://172.17.0.1/private buster-staging/main armhf python3.6 armhf 3.6.4-4 [223 kB]
Get:12 http://172.17.0.1/private buster-staging/main armhf libpython3-stdlib armhf 3.6.4-1 [19.3 kB]
Get:13 http://172.17.0.1/private buster-staging/main armhf python3 armhf 3.6.4-1 [22.3 kB]
Get:14 http://172.17.0.1/private buster-staging/main armhf gettext-base armhf 0.19.8.1-4 [117 kB]
Get:15 http://172.17.0.1/private buster-staging/main armhf libsigsegv2 armhf 2.12-1 [32.2 kB]
Get:16 http://172.17.0.1/private buster-staging/main armhf m4 armhf 1.4.18-1 [185 kB]
Get:17 http://172.17.0.1/private buster-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:18 http://172.17.0.1/private buster-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:19 http://172.17.0.1/private buster-staging/main armhf automake all 1:1.15.1-3 [736 kB]
Get:20 http://172.17.0.1/private buster-staging/main armhf autopoint all 0.19.8.1-4 [434 kB]
Get:21 http://172.17.0.1/private buster-staging/main armhf libtool all 2.4.6-2 [545 kB]
Get:22 http://172.17.0.1/private buster-staging/main armhf dh-autoreconf all 16 [16.3 kB]
Get:23 http://172.17.0.1/private buster-staging/main armhf libarchive-zip-perl all 1.60-1 [95.6 kB]
Get:24 http://172.17.0.1/private buster-staging/main armhf libfile-stripnondeterminism-perl all 0.040-1 [18.4 kB]
Get:25 http://172.17.0.1/private buster-staging/main armhf libtimedate-perl all 2.3000-2 [42.2 kB]
Get:26 http://172.17.0.1/private buster-staging/main armhf dh-strip-nondeterminism all 0.040-1 [11.8 kB]
Get:27 http://172.17.0.1/private buster-staging/main armhf gettext armhf 0.19.8.1-4 [1218 kB]
Get:28 http://172.17.0.1/private buster-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:29 http://172.17.0.1/private buster-staging/main armhf po-debconf all 1.0.20 [247 kB]
Get:30 http://172.17.0.1/private buster-staging/main armhf debhelper all 11.1.5 [1007 kB]
Get:31 http://172.17.0.1/private buster-staging/main armhf libphobos2-ldc76 armhf 1:1.6.0-1 [6370 kB]
Get:32 http://172.17.0.1/private buster-staging/main armhf libphobos2-ldc-dev armhf 1:1.6.0-1 [7596 kB]
Get:33 http://172.17.0.1/private buster-staging/main armhf ldc armhf 1:1.6.0-1 [1431 kB]
Get:34 http://172.17.0.1/private buster-staging/main armhf libundead0 armhf 1.0.9-1+b1 [80.8 kB]
Get:35 http://172.17.0.1/private buster-staging/main armhf libundead-dev armhf 1.0.9-1+b1 [62.5 kB]
Get:36 http://172.17.0.1/private buster-staging/main armhf ninja-build armhf 1.8.2-1 [78.8 kB]
Get:37 http://172.17.0.1/private buster-staging/main armhf meson all 0.45.0-1 [217 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Unpacking zlib1g-dev:armhf (1:1.2.8.dfsg-5) ...
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Preparing to unpack .../36-sbuild-build-depends-libbiod-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-libbiod-dummy (0.invalid.0) ...
Setting up libarchive-zip-perl (1.60-1) ...
Setting up mime-support (3.60) ...
Setting up libtimedate-perl (2.3000-2) ...
Setting up libsigsegv2:armhf (2.12-1) ...
Setting up groff-base (1.22.3-10) ...
Setting up libglib2.0-0:armhf (2.54.3-2) ...
No schema files found: removed existing output file.
Setting up gettext-base (0.19.8.1-4) ...
Setting up libpipeline1:armhf (1.5.0-1) ...
Setting up m4 (1.4.18-1) ...
Setting up libicu57:armhf (57.1-9) ...
Setting up libbsd0:armhf (0.8.7-1) ...
Setting up libxml2:armhf (2.9.4+dfsg1-6.1) ...
Setting up libmagic-mgc (1:5.32-2) ...
Setting up libmagic1:armhf (1:5.32-2) ...
Setting up libcroco3:armhf (0.6.12-2) ...
Setting up pkg-config (0.29-4) ...
Setting up libphobos2-ldc76:armhf (1:1.6.0-1) ...
Processing triggers for libc-bin (2.27-2+rpi1) ...
Setting up autotools-dev (20180224.1) ...
Setting up libphobos2-ldc-dev (1:1.6.0-1) ...
Setting up bsdmainutils (11.1.2) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up ninja-build (1.8.2-1) ...
Setting up autopoint (0.19.8.1-4) ...
Setting up libmpdec2:armhf (2.4.2-1) ...
Setting up zlib1g-dev:armhf (1:1.2.8.dfsg-5) ...
Setting up libfile-stripnondeterminism-perl (0.040-1) ...
Setting up libedit2:armhf (3.1-20170329-1) ...
Setting up libpython3.6-stdlib:armhf (3.6.4-4) ...
Setting up gettext (0.19.8.1-4) ...
Setting up libllvm5.0:armhf (1:5.0.1-2+rpi1) ...
Setting up autoconf (2.69-11) ...
Setting up file (1:5.32-2) ...
Setting up libundead0 (1.0.9-1+b1) ...
Setting up intltool-debian (0.35.0+20060710.4) ...
Setting up automake (1:1.15.1-3) ...
update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode
Setting up man-db (2.8.2-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up ldc (1:1.6.0-1) ...
Setting up libtool (2.4.6-2) ...
Setting up libpython3-stdlib:armhf (3.6.4-1) ...
Setting up po-debconf (1.0.20) ...
Setting up libundead-dev (1.0.9-1+b1) ...
Setting up dh-autoreconf (16) ...
Setting up python3 (3.6.4-1) ...
Setting up dh-strip-nondeterminism (0.040-1) ...
Setting up meson (0.45.0-1) ...
Setting up python3-lib2to3 (3.6.4-4) ...
Setting up dh-python (2.20170125) ...
Setting up python3-distutils (3.6.4-4) ...
Setting up debhelper (11.1.5) ...
Setting up python3.6 (3.6.4-4) ...
Setting up sbuild-build-depends-libbiod-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.27-2+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.4.0-79-generic armhf (armv8l)
Toolchain package versions: binutils_2.30-7+rpi1 dpkg-dev_1.19.0.5 g++-7_7.3.0-5 gcc-7_7.3.0-5 libc6-dev_2.27-2+rpi1 libstdc++-7-dev_7.3.0-5 libstdc++6_8-20180218-1+rpi1 linux-libc-dev_4.15.4-1+rpi1
Package versions: adduser_3.117 apt_1.6~beta1 autoconf_2.69-11 automake_1:1.15.1-3 autopoint_0.19.8.1-4 autotools-dev_20180224.1 base-files_10.1+rpi1 base-passwd_3.5.44 bash_4.4.18-1.1 binutils_2.30-7+rpi1 binutils-arm-linux-gnueabihf_2.30-7+rpi1 binutils-common_2.30-7+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.31.1-0.4 build-essential_12.4 bzip2_1.0.6-8.1 ca-certificates_20170717 coreutils_8.28-1 cpio_2.12+dfsg-6 cpp_4:7.2.0-1d1 cpp-7_7.3.0-5 dash_0.5.8-2.10 dbus_1.12.6-2 dbus-user-session_1.12.6-2 debconf_1.5.66 debhelper_11.1.5 debianutils_4.8.4 dh-autoreconf_16 dh-python_2.20170125 dh-strip-nondeterminism_0.040-1 diffutils_1:3.6-1 dirmngr_2.2.5-1 dmsetup_2:1.02.145-4.1 dpkg_1.19.0.5 dpkg-dev_1.19.0.5 e2fslibs_1.44.0-1 e2fsprogs_1.44.0-1 e2fsprogs-l10n_1.44.0-1 fakeroot_1.22-2 fdisk_2.31.1-0.4 file_1:5.32-2 findutils_4.6.0+git+20170828-2 g++_4:7.2.0-1d1 g++-7_7.3.0-5 gcc_4:7.2.0-1d1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.4-2+rpi1 gcc-5-base_5.5.0-8 gcc-7_7.3.0-5 gcc-7-base_7.3.0-5 gcc-8-base_8-20180218-1+rpi1 gettext_0.19.8.1-4 gettext-base_0.19.8.1-4 gnupg_2.2.5-1 gnupg-agent_2.2.5-1 gnupg-l10n_2.2.5-1 gnupg-utils_2.2.5-1 gpg_2.2.5-1 gpg-agent_2.2.5-1 gpg-wks-client_2.2.5-1 gpg-wks-server_2.2.5-1 gpgconf_2.2.5-1 gpgsm_2.2.5-1 gpgv_2.2.5-1 grep_3.1-2 groff-base_1.22.3-10 gzip_1.6-5 hostname_3.20 init-system-helpers_1.51 initramfs-tools_0.130 initramfs-tools-core_0.130 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-11+rpi1 kmod_25-1 ldc_1:1.6.0-1 libacl1_2.2.52-3 libapparmor1_2.12-3 libapt-pkg5.0_1.6~beta1 libarchive-zip-perl_1.60-1 libargon2-0_0~20161029-1.1 libasan4_7.3.0-5 libassuan0_2.5.1-2 libatomic1_8-20180218-1+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.8.2-1 libaudit1_1:2.8.2-1 libbinutils_2.30-7+rpi1 libblkid1_2.31.1-0.4 libbsd0_0.8.7-1 libbz2-1.0_1.0.6-8.1 libc-bin_2.27-2+rpi1 libc-dev-bin_2.27-2+rpi1 libc6_2.27-2+rpi1 libc6-dev_2.27-2+rpi1 libcap-ng0_0.7.7-3.1+b1 libcap2_1:2.25-1.2 libcc1-0_8-20180218-1+rpi1 libcilkrts5_7.3.0-5 libcom-err2_1.44.0-1 libcroco3_0.6.12-2 libcryptsetup12_2:2.0.1-1 libcryptsetup4_2:1.7.5-1 libdb5.3_5.3.28-13.1 libdbus-1-3_1.12.6-2 libdebconfclient0_0.241 libdevmapper1.02.1_2:1.02.145-4.1 libdpkg-perl_1.19.0.5 libdrm-common_2.4.90-1+rpi1 libdrm2_2.4.90-1+rpi1 libedit2_3.1-20170329-1 libexpat1_2.2.5-3 libext2fs2_1.44.0-1 libfakeroot_1.22-2 libfdisk1_2.31.1-0.4 libffi6_3.2.1-8 libfile-stripnondeterminism-perl_0.040-1 libgcc-7-dev_7.3.0-5 libgcc1_1:8-20180218-1+rpi1 libgcrypt20_1.8.1-4 libgdbm-compat4_1.14.1-4 libgdbm3_1.8.3-14 libgdbm5_1.14.1-4 libglib2.0-0_2.54.3-2 libgmp10_2:6.1.2+dfsg-3 libgnutls30_3.5.18-1 libgomp1_8-20180218-1+rpi1 libgpg-error0_1.27-6 libhogweed4_3.4-1 libicu57_57.1-9 libidn11_1.33-2.1 libidn2-0_2.0.4-1.1 libip4tc0_1.6.2-1 libisl15_0.18-1 libjson-c3_0.12.1-1.3 libklibc_2.0.4-11+rpi1 libkmod2_25-1 libksba8_1.3.5-2 libldap-2.4-2_2.4.45+dfsg-1 libldap-common_2.4.45+dfsg-1 libllvm5.0_1:5.0.1-2+rpi1 liblz4-1_0.0~r131-2 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.32-2 libmagic1_1:5.32-2 libmount1_2.31.1-0.4 libmpc3_1.1.0-1 libmpdec2_2.4.2-1 libmpfr6_4.0.1-1 libncurses5_6.1-1 libncursesw5_6.1-1 libnettle6_3.4-1 libnpth0_1.5-3 libnss-systemd_237-3+b1 libp11-kit0_0.23.9-2 libpam-modules_1.1.8-3.7 libpam-modules-bin_1.1.8-3.7 libpam-runtime_1.1.8-3.7 libpam-systemd_237-3+b1 libpam0g_1.1.8-3.7 libpcre3_2:8.39-9 libperl5.24_5.24.1-7 libperl5.26_5.26.1-5 libphobos2-ldc-dev_1:1.6.0-1 libphobos2-ldc76_1:1.6.0-1 libpipeline1_1.5.0-1 libplymouth4_0.9.3-2 libpng16-16_1.6.34-1 libprocps6_2:3.3.12-4 libpython3-stdlib_3.6.4-1 libpython3.6-minimal_3.6.4-4 libpython3.6-stdlib_3.6.4-4 libreadline7_7.0-3 libsasl2-2_2.1.27~101-g0780600+dfsg-3 libsasl2-modules_2.1.27~101-g0780600+dfsg-3 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3 libseccomp2_2.3.1-2.1 libselinux1_2.7-2 libsemanage-common_2.7-2 libsemanage1_2.7-2 libsepol1_2.7-1 libsigsegv2_2.12-1 libsmartcols1_2.31.1-0.4 libsqlite3-0_3.22.0-1 libss2_1.44.0-1 libssl1.1_1.1.0g-2 libstdc++-7-dev_7.3.0-5 libstdc++6_8-20180218-1+rpi1 libsystemd0_237-3+b1 libtasn1-6_4.13-2 libtimedate-perl_2.3000-2 libtinfo5_6.1-1 libtool_2.4.6-2 libubsan0_7.3.0-5 libudev1_237-3+b1 libundead-dev_1.0.9-1+b1 libundead0_1.0.9-1+b1 libunistring2_0.9.8-1 libustr-1.0-1_1.0.4-6 libuuid1_2.31.1-0.4 libxml2_2.9.4+dfsg1-6.1 linux-base_4.5 linux-libc-dev_4.15.4-1+rpi1 login_1:4.5-1 lsb-base_9.20170808+rpi1 m4_1.4.18-1 make_4.1-9.1 makedev_2.3.1-93 man-db_2.8.2-1 mawk_1.3.3-17 meson_0.45.0-1 mime-support_3.60 mount_2.31.1-0.4 multiarch-support_2.27-2+rpi1 nano_2.9.4-1 ncurses-base_6.1-1 ncurses-bin_6.1-1 ninja-build_1.8.2-1 openssl_1.1.0g-2 passwd_1:4.5-1 patch_2.7.6-1 perl_5.26.1-5 perl-base_5.26.1-5 perl-modules-5.24_5.24.1-7 perl-modules-5.26_5.26.1-5 pinentry-curses_1.1.0-1 pkg-config_0.29-4 plymouth_0.9.3-2 po-debconf_1.0.20 procps_2:3.3.12-4 python3_3.6.4-1 python3-distutils_3.6.4-4 python3-lib2to3_3.6.4-4 python3-minimal_3.6.4-1 python3.6_3.6.4-4 python3.6-minimal_3.6.4-4 raspbian-archive-keyring_20120528.2 readline-common_7.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-libbiod-dummy_0.invalid.0 sed_4.4-2 sensible-utils_0.0.12 systemd_237-3+b1 systemd-sysv_237-3+b1 sysvinit-utils_2.88dsf-59.10 tar_1.29b-2 tzdata_2018c-1 udev_237-3+b1 util-linux_2.31.1-0.4 xz-utils_5.2.2-1.3 zlib1g_1:1.2.8.dfsg-5 zlib1g-dev_1:1.2.8.dfsg-5
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Fri Aug 4 16:56:19 2017 UTC
gpgv: using RSA key D33A3F0CA16B0ACC51A60738494C8A5FBF4DECEB
gpgv: issuer "mak@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./libbiod_0.1.0-4.dsc
dpkg-source: info: extracting libbiod in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking libbiod_0.1.0.orig.tar.gz
dpkg-source: info: unpacking libbiod_0.1.0-4.debian.tar.xz
dpkg-source: info: applying 0002-improved-big-endian-support.patch
dpkg-source: info: applying 0003-include-the-AH-header-tag-to-SQ-lines.patch
dpkg-source: info: applying 0004-use-consistent-naming-21.patch
dpkg-source: info: applying 0005-fixes-lomereiter-sambamba-244.patch
dpkg-source: info: applying 0006-switch-to-undead.stream.patch
dpkg-source: info: applying 0007-std.c-core.stdc.patch
dpkg-source: info: applying 0008-fix-deprecations-and-some-warnings.patch
dpkg-source: info: applying 0009-fix-toHash-signature.patch
dpkg-source: info: applying 0011-better-.travis.yml-uses-dub-test-and-tests-ldc.patch
dpkg-source: info: applying 0013-fix-toJSON-usage-for-new-and-old-compilers.patch
dpkg-source: info: applying 0014-Add-compareCoordinatesAndStrand-to-fix-sorting-test-.patch
dpkg-source: info: applying 0015-Add-Meson-build-definition.patch
dpkg-source: info: applying 0016-fix-type-conversion.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=buster-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=buster-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=buster-staging-armhf-sbuild-859d046f-629c-47bc-ac84-7cf036a407c7
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package libbiod
dpkg-buildpackage: info: source version 0.1.0-4
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build libbiod-0.1.0
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean
dh_auto_clean
dh_clean
debian/rules build-arch
dh build-arch
dh_update_autotools_config -a
dh_autoreconf -a
dh_auto_configure -a
cd obj-arm-linux-gnueabihf && LC_ALL=C.UTF-8 meson .. --wrap-mode=nodownload --buildtype=plain --prefix=/usr --sysconfdir=/etc --localstatedir=/var --libdir=lib/arm-linux-gnueabihf --libexecdir=lib/arm-linux-gnueabihf
The Meson build system
Version: 0.45.0
Source dir: /<<PKGBUILDDIR>>
Build dir: /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf
Build type: native build
Project name: BioD
Native D compiler: ldc2 (llvm 1.6.0 "LDC - the LLVM D compiler (1.6.0):")
Appending DFLAGS from environment: '-O -g -release'
Appending LDFLAGS from environment: '-Wl,-z,relro -Wl,-z,now'
Build machine cpu family: arm
Build machine cpu: armv8l
Found pkg-config: /usr/bin/pkg-config (0.29)
Native dependency undead found: YES 1.0.7
Native dependency zlib found: YES 1.2.8
Build targets in project: 2
Found ninja-1.8.2 at /usr/bin/ninja
dh_auto_build -a
cd obj-arm-linux-gnueabihf && LC_ALL=C.UTF-8 ninja -j4 -v
[1/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -relocation-model=pic -of 'biod@sha/bio_bam_utils_array.d.o' -c ../bio/bam/utils/array.d
[2/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -relocation-model=pic -of 'biod@sha/bio_bam_utils_graph.d.o' -c ../bio/bam/utils/graph.d
[3/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -relocation-model=pic -of 'biod@sha/bio_bam_utils_value.d.o' -c ../bio/bam/utils/value.d
[4/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -relocation-model=pic -of 'biod@sha/bio_bam_pileup.d.o' -c ../bio/bam/pileup.d
[5/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -relocation-model=pic -of 'biod@sha/bio_bam_readrange.d.o' -c ../bio/bam/readrange.d
[6/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -relocation-model=pic -of 'biod@sha/bio_bam_baifile.d.o' -c ../bio/bam/baifile.d
[7/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -relocation-model=pic -of 'biod@sha/bio_bam_thirdparty_msgpack.d.o' -c ../bio/bam/thirdparty/msgpack.d
[8/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -relocation-model=pic -of 'biod@sha/bio_bam_iontorrent_flowindex.d.o' -c ../bio/bam/iontorrent/flowindex.d
[9/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -relocation-model=pic -of 'biod@sha/bio_bam_reader.d.o' -c ../bio/bam/reader.d
[10/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -relocation-model=pic -of 'biod@sha/bio_bam_utils_samheadermerger.d.o' -c ../bio/bam/utils/samheadermerger.d
[11/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -relocation-model=pic -of 'biod@sha/bio_bam_iontorrent_flowcall.d.o' -c ../bio/bam/iontorrent/flowcall.d
[12/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -relocation-model=pic -of 'biod@sha/bio_bam_bai_bin.d.o' -c ../bio/bam/bai/bin.d
[13/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -relocation-model=pic -of 'biod@sha/bio_bam_splitter.d.o' -c ../bio/bam/splitter.d
[14/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -relocation-model=pic -of 'biod@sha/bio_bam_abstractreader.d.o' -c ../bio/bam/abstractreader.d
[15/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -relocation-model=pic -of 'biod@sha/bio_bam_reference.d.o' -c ../bio/bam/reference.d
[16/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -relocation-model=pic -of 'biod@sha/bio_bam_bai_indexing.d.o' -c ../bio/bam/bai/indexing.d
[17/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -relocation-model=pic -of 'biod@sha/bio_bam_md_core.d.o' -c ../bio/bam/md/core.d
[18/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -relocation-model=pic -of 'biod@sha/bio_bam_md_operation.d.o' -c ../bio/bam/md/operation.d
[19/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -relocation-model=pic -of 'biod@sha/bio_bam_md_reconstruct.d.o' -c ../bio/bam/md/reconstruct.d
[20/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -relocation-model=pic -of 'biod@sha/bio_bam_md_parse.d.o' -c ../bio/bam/md/parse.d
[21/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -relocation-model=pic -of 'biod@sha/bio_bam_validation_samheader.d.o' -c ../bio/bam/validation/samheader.d
[22/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -relocation-model=pic -of 'biod@sha/bio_bam_region.d.o' -c ../bio/bam/region.d
[23/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -relocation-model=pic -of 'biod@sha/bio_bam_validation_alignment.d.o' -c ../bio/bam/validation/alignment.d
[24/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -relocation-model=pic -of 'biod@sha/bio_bam_referenceinfo.d.o' -c ../bio/bam/referenceinfo.d
[25/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -relocation-model=pic -of 'biod@sha/bio_bam_constants.d.o' -c ../bio/bam/constants.d
[26/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -relocation-model=pic -of 'biod@sha/bio_bam_tagvalue.d.o' -c ../bio/bam/tagvalue.d
[27/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -relocation-model=pic -of 'biod@sha/bio_bam_randomaccessmanager.d.o' -c ../bio/bam/randomaccessmanager.d
[28/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -relocation-model=pic -of 'biod@sha/bio_bam_snpcallers_simple.d.o' -c ../bio/bam/snpcallers/simple.d
[29/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -relocation-model=pic -of 'biod@sha/bio_bam_snpcallers_maq.d.o' -c ../bio/bam/snpcallers/maq.d
[30/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -relocation-model=pic -of 'biod@sha/bio_bam_baseinfo.d.o' -c ../bio/bam/baseinfo.d
[31/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -relocation-model=pic -of 'biod@sha/bio_bam_writer.d.o' -c ../bio/bam/writer.d
[32/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -relocation-model=pic -of 'biod@sha/bio_maf_reader.d.o' -c ../bio/maf/reader.d
[33/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -relocation-model=pic -of 'biod@sha/bio_maf_block.d.o' -c ../bio/maf/block.d
[34/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -relocation-model=pic -of 'biod@sha/bio_core_utils_memoize.d.o' -c ../bio/core/utils/memoize.d
[35/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -relocation-model=pic -of 'biod@sha/bio_core_utils_algo.d.o' -c ../bio/core/utils/algo.d
[36/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -relocation-model=pic -of 'biod@sha/bio_bam_multireader.d.o' -c ../bio/bam/multireader.d
[37/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -relocation-model=pic -of 'biod@sha/bio_core_utils_stream.d.o' -c ../bio/core/utils/stream.d
[38/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -relocation-model=pic -of 'biod@sha/bio_core_utils_zlib.d.o' -c ../bio/core/utils/zlib.d
[39/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -relocation-model=pic -of 'biod@sha/bio_core_utils_tmpfile.d.o' -c ../bio/core/utils/tmpfile.d
[40/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -relocation-model=pic -of 'biod@sha/bio_core_utils_roundbuf.d.o' -c ../bio/core/utils/roundbuf.d
[41/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -relocation-model=pic -of 'biod@sha/bio_maf_parser.d.o' -c ../bio/maf/parser.d
[42/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -relocation-model=pic -of 'biod@sha/bio_core_utils_format.d.o' -c ../bio/core/utils/format.d
[43/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -relocation-model=pic -of 'biod@sha/bio_bam_read.d.o' -c ../bio/bam/read.d
[44/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -relocation-model=pic -of 'biod@sha/bio_core_utils_switchendianness.d.o' -c ../bio/core/utils/switchendianness.d
[45/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -relocation-model=pic -of 'biod@sha/bio_core_utils_range.d.o' -c ../bio/core/utils/range.d
[46/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -relocation-model=pic -of 'biod@sha/bio_core_utils_outbuffer.d.o' -c ../bio/core/utils/outbuffer.d
[47/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -relocation-model=pic -of 'biod@sha/bio_core_genotype.d.o' -c ../bio/core/genotype.d
[48/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -relocation-model=pic -of 'biod@sha/bio_core_utils_bylinefast.d.o' -c ../bio/core/utils/bylinefast.d
[49/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -relocation-model=pic -of 'biod@sha/bio_core_base.d.o' -c ../bio/core/base.d
[50/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -relocation-model=pic -of 'biod@sha/bio_core_kmer.d.o' -c ../bio/core/kmer.d
[51/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -relocation-model=pic -of 'biod@sha/bio_core_region.d.o' -c ../bio/core/region.d
[52/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -relocation-model=pic -of 'biod@sha/bio_core_tinymap.d.o' -c ../bio/core/tinymap.d
[53/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -relocation-model=pic -of 'biod@sha/bio_core_sequence.d.o' -c ../bio/core/sequence.d
[54/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -relocation-model=pic -of 'biod@sha/bio_core_bgzf_chunk.d.o' -c ../bio/core/bgzf/chunk.d
[55/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -relocation-model=pic -of 'biod@sha/bio_core_bgzf_outputstream.d.o' -c ../bio/core/bgzf/outputstream.d
[56/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -relocation-model=pic -of 'biod@sha/bio_core_bgzf_inputstream.d.o' -c ../bio/core/bgzf/inputstream.d
[57/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -relocation-model=pic -of 'biod@sha/bio_core_bgzf_constants.d.o' -c ../bio/core/bgzf/constants.d
[58/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -relocation-model=pic -of 'biod@sha/bio_core_fasta.d.o' -c ../bio/core/fasta.d
[59/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -relocation-model=pic -of 'biod@sha/bio_core_bgzf_compress.d.o' -c ../bio/core/bgzf/compress.d
[60/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -relocation-model=pic -of 'biod@sha/bio_core_bgzf_block.d.o' -c ../bio/core/bgzf/block.d
[61/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -relocation-model=pic -of 'biod@sha/bio_sff_utils_roundup.d.o' -c ../bio/sff/utils/roundup.d
[62/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -relocation-model=pic -of 'biod@sha/bio_core_call.d.o' -c ../bio/core/call.d
[63/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -relocation-model=pic -of 'biod@sha/bio_sff_index.d.o' -c ../bio/sff/index.d
[64/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -relocation-model=pic -of 'biod@sha/bio_core_bgzf_virtualoffset.d.o' -c ../bio/core/bgzf/virtualoffset.d
[65/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -relocation-model=pic -of 'biod@sha/bio_sff_constants.d.o' -c ../bio/sff/constants.d
[66/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -relocation-model=pic -of 'biod@sha/bio_sff_read.d.o' -c ../bio/sff/read.d
[67/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -relocation-model=pic -of 'biod@sha/bio_sff_readrange.d.o' -c ../bio/sff/readrange.d
[68/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -relocation-model=pic -of 'biod@sha/bio_sff_writer.d.o' -c ../bio/sff/writer.d
[69/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -relocation-model=pic -of 'biod@sha/bio_sff_reader.d.o' -c ../bio/sff/reader.d
[70/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_bam_validation_alignment.d.o' -c ../bio/bam/validation/alignment.d
[71/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -relocation-model=pic -of 'biod@sha/bio_sam_utils_recordparser.d.o' -c ../bio/sam/utils/recordparser.d
[72/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -relocation-model=pic -of 'biod@sha/bio_sam_reader.d.o' -c ../bio/sam/reader.d
[73/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_bam_reference.d.o' -c ../bio/bam/reference.d
[74/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -relocation-model=pic -of 'biod@sha/bio_sam_utils_fastrecordparser.d.o' -c ../bio/sam/utils/fastrecordparser.d
[75/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_bam_md_core.d.o' -c ../bio/bam/md/core.d
[76/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -relocation-model=pic -of 'biod@sha/bio_sam_header.d.o' -c ../bio/sam/header.d
[77/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_bam_md_reconstruct.d.o' -c ../bio/bam/md/reconstruct.d
[78/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_bam_md_operation.d.o' -c ../bio/bam/md/operation.d
[79/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_bam_md_parse.d.o' -c ../bio/bam/md/parse.d
[80/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_bam_utils_value.d.o' -c ../bio/bam/utils/value.d
[81/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_bam_tagvalue.d.o' -c ../bio/bam/tagvalue.d
[82/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_bam_utils_array.d.o' -c ../bio/bam/utils/array.d
[83/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_bam_utils_graph.d.o' -c ../bio/bam/utils/graph.d
[84/149] ldc2 -of libbiod.so.0.1.0 'biod@sha/bio_bam_utils_value.d.o' 'biod@sha/bio_bam_utils_samheadermerger.d.o' 'biod@sha/bio_bam_utils_array.d.o' 'biod@sha/bio_bam_utils_graph.d.o' 'biod@sha/bio_bam_pileup.d.o' 'biod@sha/bio_bam_readrange.d.o' 'biod@sha/bio_bam_reader.d.o' 'biod@sha/bio_bam_thirdparty_msgpack.d.o' 'biod@sha/bio_bam_baifile.d.o' 'biod@sha/bio_bam_iontorrent_flowcall.d.o' 'biod@sha/bio_bam_iontorrent_flowindex.d.o' 'biod@sha/bio_bam_splitter.d.o' 'biod@sha/bio_bam_abstractreader.d.o' 'biod@sha/bio_bam_bai_indexing.d.o' 'biod@sha/bio_bam_bai_bin.d.o' 'biod@sha/bio_bam_multireader.d.o' 'biod@sha/bio_bam_reference.d.o' 'biod@sha/bio_bam_md_operation.d.o' 'biod@sha/bio_bam_md_core.d.o' 'biod@sha/bio_bam_md_parse.d.o' 'biod@sha/bio_bam_md_reconstruct.d.o' 'biod@sha/bio_bam_tagvalue.d.o' 'biod@sha/bio_bam_validation_alignment.d.o' 'biod@sha/bio_bam_validation_samheader.d.o' 'biod@sha/bio_bam_region.d.o' 'biod@sha/bio_bam_randomaccessmanager.d.o' 'biod@sha/bio_bam_referenceinfo.d.o' 'biod@sha/bio_bam_constants.d.o' 'biod@sha/bio_bam_snpcallers_maq.d.o' 'biod@sha/bio_bam_snpcallers_simple.d.o' 'biod@sha/bio_bam_read.d.o' 'biod@sha/bio_bam_writer.d.o' 'biod@sha/bio_bam_baseinfo.d.o' 'biod@sha/bio_maf_reader.d.o' 'biod@sha/bio_maf_parser.d.o' 'biod@sha/bio_maf_block.d.o' 'biod@sha/bio_core_utils_memoize.d.o' 'biod@sha/bio_core_utils_algo.d.o' 'biod@sha/bio_core_utils_stream.d.o' 'biod@sha/bio_core_utils_zlib.d.o' 'biod@sha/bio_core_utils_tmpfile.d.o' 'biod@sha/bio_core_utils_roundbuf.d.o' 'biod@sha/bio_core_utils_format.d.o' 'biod@sha/bio_core_utils_bylinefast.d.o' 'biod@sha/bio_core_utils_range.d.o' 'biod@sha/bio_core_utils_switchendianness.d.o' 'biod@sha/bio_core_utils_outbuffer.d.o' 'biod@sha/bio_core_genotype.d.o' 'biod@sha/bio_core_fasta.d.o' 'biod@sha/bio_core_base.d.o' 'biod@sha/bio_core_kmer.d.o' 'biod@sha/bio_core_region.d.o' 'biod@sha/bio_core_tinymap.d.o' 'biod@sha/bio_core_sequence.d.o' 'biod@sha/bio_core_bgzf_outputstream.d.o' 'biod@sha/bio_core_bgzf_chunk.d.o' 'biod@sha/bio_core_bgzf_inputstream.d.o' 'biod@sha/bio_core_bgzf_constants.d.o' 'biod@sha/bio_core_bgzf_block.d.o' 'biod@sha/bio_core_bgzf_virtualoffset.d.o' 'biod@sha/bio_core_bgzf_compress.d.o' 'biod@sha/bio_core_call.d.o' 'biod@sha/bio_sff_utils_roundup.d.o' 'biod@sha/bio_sff_index.d.o' 'biod@sha/bio_sff_readrange.d.o' 'biod@sha/bio_sff_reader.d.o' 'biod@sha/bio_sff_constants.d.o' 'biod@sha/bio_sff_read.d.o' 'biod@sha/bio_sff_writer.d.o' 'biod@sha/bio_sam_utils_fastrecordparser.d.o' 'biod@sha/bio_sam_utils_recordparser.d.o' 'biod@sha/bio_sam_reader.d.o' 'biod@sha/bio_sam_header.d.o' -shared -relocation-model=pic -L-soname -Llibbiod.so.0 -O -g -release -L-z -Lrelro -L-z -Lnow -L-lundead -L-lz
[85/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_bam_utils_samheadermerger.d.o' -c ../bio/bam/utils/samheadermerger.d
[86/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_bam_readrange.d.o' -c ../bio/bam/readrange.d
[87/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_bam_pileup.d.o' -c ../bio/bam/pileup.d
[88/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_bam_baifile.d.o' -c ../bio/bam/baifile.d
[89/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_bam_reader.d.o' -c ../bio/bam/reader.d
[90/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_bam_iontorrent_flowindex.d.o' -c ../bio/bam/iontorrent/flowindex.d
[91/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_bam_splitter.d.o' -c ../bio/bam/splitter.d
[92/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_bam_thirdparty_msgpack.d.o' -c ../bio/bam/thirdparty/msgpack.d
[93/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_bam_iontorrent_flowcall.d.o' -c ../bio/bam/iontorrent/flowcall.d
[94/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_bam_bai_bin.d.o' -c ../bio/bam/bai/bin.d
[95/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_bam_abstractreader.d.o' -c ../bio/bam/abstractreader.d
[96/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_bam_validation_samheader.d.o' -c ../bio/bam/validation/samheader.d
[97/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_bam_region.d.o' -c ../bio/bam/region.d
[98/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_bam_bai_indexing.d.o' -c ../bio/bam/bai/indexing.d
[99/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_bam_referenceinfo.d.o' -c ../bio/bam/referenceinfo.d
[100/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_bam_constants.d.o' -c ../bio/bam/constants.d
[101/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/test_unittests.d.o' -c ../test/unittests.d
[102/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_bam_snpcallers_maq.d.o' -c ../bio/bam/snpcallers/maq.d
[103/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_bam_snpcallers_simple.d.o' -c ../bio/bam/snpcallers/simple.d
[104/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_bam_randomaccessmanager.d.o' -c ../bio/bam/randomaccessmanager.d
[105/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_bam_writer.d.o' -c ../bio/bam/writer.d
[106/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_maf_reader.d.o' -c ../bio/maf/reader.d
[107/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_bam_baseinfo.d.o' -c ../bio/bam/baseinfo.d
[108/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_maf_block.d.o' -c ../bio/maf/block.d
[109/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_maf_parser.d.o' -c ../bio/maf/parser.d
[110/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_core_utils_algo.d.o' -c ../bio/core/utils/algo.d
[111/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_core_utils_memoize.d.o' -c ../bio/core/utils/memoize.d
[112/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_core_utils_zlib.d.o' -c ../bio/core/utils/zlib.d
[113/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_bam_read.d.o' -c ../bio/bam/read.d
[114/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_bam_multireader.d.o' -c ../bio/bam/multireader.d
[115/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_core_utils_roundbuf.d.o' -c ../bio/core/utils/roundbuf.d
[116/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_core_utils_format.d.o' -c ../bio/core/utils/format.d
[117/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_core_utils_stream.d.o' -c ../bio/core/utils/stream.d
[118/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_core_utils_switchendianness.d.o' -c ../bio/core/utils/switchendianness.d
[119/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_core_utils_bylinefast.d.o' -c ../bio/core/utils/bylinefast.d
[120/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_core_utils_outbuffer.d.o' -c ../bio/core/utils/outbuffer.d
[121/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_core_utils_tmpfile.d.o' -c ../bio/core/utils/tmpfile.d
[122/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_core_genotype.d.o' -c ../bio/core/genotype.d
[123/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_core_base.d.o' -c ../bio/core/base.d
[124/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_core_region.d.o' -c ../bio/core/region.d
[125/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_core_kmer.d.o' -c ../bio/core/kmer.d
[126/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_core_utils_range.d.o' -c ../bio/core/utils/range.d
[127/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_core_sequence.d.o' -c ../bio/core/sequence.d
[128/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_core_bgzf_chunk.d.o' -c ../bio/core/bgzf/chunk.d
[129/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_core_fasta.d.o' -c ../bio/core/fasta.d
[130/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_core_bgzf_constants.d.o' -c ../bio/core/bgzf/constants.d
[131/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_core_bgzf_block.d.o' -c ../bio/core/bgzf/block.d
[132/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_core_bgzf_inputstream.d.o' -c ../bio/core/bgzf/inputstream.d
[133/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_core_bgzf_outputstream.d.o' -c ../bio/core/bgzf/outputstream.d
[134/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_core_bgzf_virtualoffset.d.o' -c ../bio/core/bgzf/virtualoffset.d
[135/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_core_tinymap.d.o' -c ../bio/core/tinymap.d
[136/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_sff_index.d.o' -c ../bio/sff/index.d
[137/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_sff_utils_roundup.d.o' -c ../bio/sff/utils/roundup.d
[138/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_core_bgzf_compress.d.o' -c ../bio/core/bgzf/compress.d
[139/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_sff_constants.d.o' -c ../bio/sff/constants.d
[140/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_sff_read.d.o' -c ../bio/sff/read.d
[141/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_core_call.d.o' -c ../bio/core/call.d
[142/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_sff_readrange.d.o' -c ../bio/sff/readrange.d
[143/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_sff_reader.d.o' -c ../bio/sff/reader.d
[144/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_sff_writer.d.o' -c ../bio/sff/writer.d
[145/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_sam_utils_recordparser.d.o' -c ../bio/sam/utils/recordparser.d
[146/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_sam_reader.d.o' -c ../bio/sam/reader.d
[147/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_sam_header.d.o' -c ../bio/sam/header.d
[148/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_sam_utils_fastrecordparser.d.o' -c ../bio/sam/utils/fastrecordparser.d
[149/149] ldc2 -of biod_test 'biod_test@exe/test_unittests.d.o' 'biod_test@exe/bio_bam_utils_value.d.o' 'biod_test@exe/bio_bam_utils_samheadermerger.d.o' 'biod_test@exe/bio_bam_utils_array.d.o' 'biod_test@exe/bio_bam_utils_graph.d.o' 'biod_test@exe/bio_bam_pileup.d.o' 'biod_test@exe/bio_bam_readrange.d.o' 'biod_test@exe/bio_bam_reader.d.o' 'biod_test@exe/bio_bam_thirdparty_msgpack.d.o' 'biod_test@exe/bio_bam_baifile.d.o' 'biod_test@exe/bio_bam_iontorrent_flowcall.d.o' 'biod_test@exe/bio_bam_iontorrent_flowindex.d.o' 'biod_test@exe/bio_bam_splitter.d.o' 'biod_test@exe/bio_bam_abstractreader.d.o' 'biod_test@exe/bio_bam_bai_indexing.d.o' 'biod_test@exe/bio_bam_bai_bin.d.o' 'biod_test@exe/bio_bam_multireader.d.o' 'biod_test@exe/bio_bam_reference.d.o' 'biod_test@exe/bio_bam_md_operation.d.o' 'biod_test@exe/bio_bam_md_core.d.o' 'biod_test@exe/bio_bam_md_parse.d.o' 'biod_test@exe/bio_bam_md_reconstruct.d.o' 'biod_test@exe/bio_bam_tagvalue.d.o' 'biod_test@exe/bio_bam_validation_alignment.d.o' 'biod_test@exe/bio_bam_validation_samheader.d.o' 'biod_test@exe/bio_bam_region.d.o' 'biod_test@exe/bio_bam_randomaccessmanager.d.o' 'biod_test@exe/bio_bam_referenceinfo.d.o' 'biod_test@exe/bio_bam_constants.d.o' 'biod_test@exe/bio_bam_snpcallers_maq.d.o' 'biod_test@exe/bio_bam_snpcallers_simple.d.o' 'biod_test@exe/bio_bam_read.d.o' 'biod_test@exe/bio_bam_writer.d.o' 'biod_test@exe/bio_bam_baseinfo.d.o' 'biod_test@exe/bio_maf_reader.d.o' 'biod_test@exe/bio_maf_parser.d.o' 'biod_test@exe/bio_maf_block.d.o' 'biod_test@exe/bio_core_utils_memoize.d.o' 'biod_test@exe/bio_core_utils_algo.d.o' 'biod_test@exe/bio_core_utils_stream.d.o' 'biod_test@exe/bio_core_utils_zlib.d.o' 'biod_test@exe/bio_core_utils_tmpfile.d.o' 'biod_test@exe/bio_core_utils_roundbuf.d.o' 'biod_test@exe/bio_core_utils_format.d.o' 'biod_test@exe/bio_core_utils_bylinefast.d.o' 'biod_test@exe/bio_core_utils_range.d.o' 'biod_test@exe/bio_core_utils_switchendianness.d.o' 'biod_test@exe/bio_core_utils_outbuffer.d.o' 'biod_test@exe/bio_core_genotype.d.o' 'biod_test@exe/bio_core_fasta.d.o' 'biod_test@exe/bio_core_base.d.o' 'biod_test@exe/bio_core_kmer.d.o' 'biod_test@exe/bio_core_region.d.o' 'biod_test@exe/bio_core_tinymap.d.o' 'biod_test@exe/bio_core_sequence.d.o' 'biod_test@exe/bio_core_bgzf_outputstream.d.o' 'biod_test@exe/bio_core_bgzf_chunk.d.o' 'biod_test@exe/bio_core_bgzf_inputstream.d.o' 'biod_test@exe/bio_core_bgzf_constants.d.o' 'biod_test@exe/bio_core_bgzf_block.d.o' 'biod_test@exe/bio_core_bgzf_virtualoffset.d.o' 'biod_test@exe/bio_core_bgzf_compress.d.o' 'biod_test@exe/bio_core_call.d.o' 'biod_test@exe/bio_sff_utils_roundup.d.o' 'biod_test@exe/bio_sff_index.d.o' 'biod_test@exe/bio_sff_readrange.d.o' 'biod_test@exe/bio_sff_reader.d.o' 'biod_test@exe/bio_sff_constants.d.o' 'biod_test@exe/bio_sff_read.d.o' 'biod_test@exe/bio_sff_writer.d.o' 'biod_test@exe/bio_sam_utils_fastrecordparser.d.o' 'biod_test@exe/bio_sam_utils_recordparser.d.o' 'biod_test@exe/bio_sam_reader.d.o' 'biod_test@exe/bio_sam_header.d.o' -O -g -release -L-z -Lrelro -L-z -Lnow -L-lundead -L-lz
dh_auto_test -a
cd obj-arm-linux-gnueabihf && LC_ALL=C.UTF-8 MESON_TESTTHREADS=4 ninja test
[0/1] Running all tests.
1/1 biod_tests FAIL 0.76 s
OK: 0
FAIL: 1
SKIP: 0
TIMEOUT: 0
The output from the failed tests:
1/1 biod_tests FAIL 0.76 s
--- command ---
/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/biod_test
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/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/biod_test[0x99f18]
/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/biod_test[0x99f18]
/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/biod_test[0x99f18]
/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/biod_test[0x99f18]
/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/biod_test[0x99f18]
/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/biod_test[0x99f18]
/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/biod_test[0x99f18]
/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/biod_test[0x99f18]
/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/biod_test[0x99f18]
/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/biod_test[0x99f18]
/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/biod_test[0x99f18]
/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/biod_test[0x99f18]
/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/biod_test[0x99f18]
/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/biod_test[0x99f18]
/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/biod_test[0x99f18]
/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/biod_test[0x99f18]
/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/biod_test[0x99f18]
/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/biod_test[0x99f18]
/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/biod_test[0x99f18]
/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/biod_test[0x99f18]
/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/biod_test[0x99f18]
/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/biod_test[0x99f18]
/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/biod_test[0x99f18]
/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/biod_test[0x99f18]
/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/biod_test[0x99f18]
/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/biod_test[0x99f18]
/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/biod_test[0x99f18]
/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/biod_test[0x99f18]
/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/biod_test[0x99f18]
/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/biod_test[0x99f18]
/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/biod_test[0x99f18]
/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/biod_test[0x99f18]
/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/biod_test[0x99f18]
/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/biod_test[0x99f18]
/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/biod_test[0x99f18]
/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/biod_test[0x99f18]
/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/biod_test[0x99f18]
/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/biod_test[0x99f18]
/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/biod_test[0x99f18]
/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/biod_test[0x99f18]
/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/biod_test[0x99f18]
/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/biod_test[0x99f18]
-------
Full log written to /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/meson-logs/testlog.txt
FAILED: meson-test
/usr/bin/python3 -u /usr/bin/meson test --no-rebuild --print-errorlogs
ninja: build stopped: subcommand failed.
dh_auto_test: cd obj-arm-linux-gnueabihf && LC_ALL=C.UTF-8 MESON_TESTTHREADS=4 ninja test returned exit code 1
debian/rules:8: recipe for target 'build-arch' failed
make: *** [build-arch] Error 1
dpkg-buildpackage: error: debian/rules build-arch subprocess returned exit status 2
--------------------------------------------------------------------------------
Build finished at 2018-03-17T18:36:12Z
Finished
--------
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
E: Build failure (dpkg-buildpackage died)
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 165104
Build-Time: 148
Distribution: buster-staging
Fail-Stage: build
Host Architecture: armhf
Install-Time: 159
Job: libbiod_0.1.0-4
Machine Architecture: armhf
Package: libbiod
Package-Time: 323
Source-Version: 0.1.0-4
Space: 165104
Status: attempted
Version: 0.1.0-4
--------------------------------------------------------------------------------
Finished at 2018-03-17T18:36:12Z
Build needed 00:05:23, 165104k disk space