last-align →
712-1 →
armhf → 2016-01-10 13:09:31
sbuild (Debian sbuild) 0.65.2 (24 Mar 2015) on bm-wb-03
╔══════════════════════════════════════════════════════════════════════════════╗
║ last-align 712-1 (armhf) 10 Jan 2016 12:48 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: last-align
Version: 712-1
Source Version: 712-1
Distribution: stretch-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'build/last-align-dtmPiQ/last-align-712' with '«PKGBUILDDIR»'
I: NOTICE: Log filtering will replace 'build/last-align-dtmPiQ' with '«BUILDDIR»'
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/stretch-staging-armhf-sbuild-88e9560c-6586-4645-ba2c-a10fdb0c8007' with '«CHROOT»'
┌──────────────────────────────────────────────────────────────────────────────┐
│ Update chroot │
└──────────────────────────────────────────────────────────────────────────────┘
Get:1 http://172.17.0.1/private stretch-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private stretch-staging/main Sources [8594 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf Packages [10.6 MB]
Fetched 19.2 MB in 21s (901 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
┌──────────────────────────────────────────────────────────────────────────────┐
│ Fetch source files │
└──────────────────────────────────────────────────────────────────────────────┘
Check APT
─────────
Checking available source versions...
Download source files with APT
──────────────────────────────
Reading package lists...
Building dependency tree...
Reading state information...
NOTICE: 'last-align' packaging is maintained in the 'Git' version control system at:
git://anonscm.debian.org/debian-med/last-align.git
Please use:
git clone git://anonscm.debian.org/debian-med/last-align.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 375 kB of source archives.
Get:1 http://172.17.0.1/private stretch-staging/main last-align 712-1 (dsc) [1961 B]
Get:2 http://172.17.0.1/private stretch-staging/main last-align 712-1 (tar) [365 kB]
Get:3 http://172.17.0.1/private stretch-staging/main last-align 712-1 (diff) [8344 B]
Fetched 375 kB in 0s (4744 kB/s)
Download complete and in download only mode
Check architectures
───────────────────
Check dependencies
──────────────────
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/«BUILDDIR»/resolver-p9jCY4/apt_archive/sbuild-build-depends-core-dummy.deb'.
OK
Get:1 file:/«BUILDDIR»/resolver-p9jCY4/apt_archive ./ InRelease
Ign:1 file:/«BUILDDIR»/resolver-p9jCY4/apt_archive ./ InRelease
Get:2 file:/«BUILDDIR»/resolver-p9jCY4/apt_archive ./ Release [2119 B]
Get:2 file:/«BUILDDIR»/resolver-p9jCY4/apt_archive ./ Release [2119 B]
Get:3 file:/«BUILDDIR»/resolver-p9jCY4/apt_archive ./ Release.gpg [299 B]
Get:3 file:/«BUILDDIR»/resolver-p9jCY4/apt_archive ./ Release.gpg [299 B]
Get:4 file:/«BUILDDIR»/resolver-p9jCY4/apt_archive ./ Sources [208 B]
Get:5 file:/«BUILDDIR»/resolver-p9jCY4/apt_archive ./ Packages [525 B]
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install core build dependencies (apt-based resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 19 not upgraded.
Need to get 0 B/762 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 file:/«BUILDDIR»/resolver-p9jCY4/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [762 B]
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 12701 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
Merged Build-Depends: libc6-dev | libc-dev, gcc (>= 4:4.9.1), g++ (>= 4:4.9.1), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), help2man, python-imaging
Filtered Build-Depends: libc6-dev, gcc (>= 4:4.9.1), g++ (>= 4:4.9.1), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), help2man, python-imaging
dpkg-deb: building package 'sbuild-build-depends-last-align-dummy' in '/«BUILDDIR»/resolver-_hyRVg/apt_archive/sbuild-build-depends-last-align-dummy.deb'.
OK
Get:1 file:/«BUILDDIR»/resolver-_hyRVg/apt_archive ./ InRelease
Ign:1 file:/«BUILDDIR»/resolver-_hyRVg/apt_archive ./ InRelease
Get:2 file:/«BUILDDIR»/resolver-_hyRVg/apt_archive ./ Release [2119 B]
Get:2 file:/«BUILDDIR»/resolver-_hyRVg/apt_archive ./ Release [2119 B]
Get:3 file:/«BUILDDIR»/resolver-_hyRVg/apt_archive ./ Release.gpg [299 B]
Get:3 file:/«BUILDDIR»/resolver-_hyRVg/apt_archive ./ Release.gpg [299 B]
Get:4 file:/«BUILDDIR»/resolver-_hyRVg/apt_archive ./ Sources [331 B]
Get:5 file:/«BUILDDIR»/resolver-_hyRVg/apt_archive ./ Packages [589 B]
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install last-align build dependencies (apt-based resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
bsdmainutils debhelper dh-strip-nondeterminism file gettext gettext-base
groff-base help2man intltool-debian libarchive-zip-perl libcroco3 libexpat1
libffi6 libfile-stripnondeterminism-perl libfreetype6 libglib2.0-0 libicu55
libjbig0 libjpeg62-turbo liblcms2-2 liblocale-gettext-perl libmagic1
libpipeline1 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib
libsqlite3-0 libssl1.0.2 libtiff5 libtimedate-perl libunistring0 libwebp5
libwebpdemux1 libwebpmux1 libxml2 man-db mime-support po-debconf python
python-imaging python-minimal python-pil python2.7 python2.7-minimal
Suggested packages:
wamerican | wordlist whois vacation dh-make gettext-doc autopoint
libasprintf-dev libgettextpo-dev groff liblcms2-utils less www-browser
libmail-box-perl python-doc python-tk python-pil-doc python-pil-dbg
python2.7-doc binfmt-support
Recommended packages:
curl | wget | lynx-cur libglib2.0-data shared-mime-info xdg-user-dirs
xml-core libmail-sendmail-perl
The following NEW packages will be installed:
bsdmainutils debhelper dh-strip-nondeterminism file gettext gettext-base
groff-base help2man intltool-debian libarchive-zip-perl libcroco3 libexpat1
libffi6 libfile-stripnondeterminism-perl libfreetype6 libglib2.0-0 libicu55
libjbig0 libjpeg62-turbo liblcms2-2 liblocale-gettext-perl libmagic1
libpipeline1 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib
libsqlite3-0 libssl1.0.2 libtiff5 libtimedate-perl libunistring0 libwebp5
libwebpdemux1 libwebpmux1 libxml2 man-db mime-support po-debconf python
python-imaging python-minimal python-pil python2.7 python2.7-minimal
sbuild-build-depends-last-align-dummy
0 upgraded, 45 newly installed, 0 to remove and 19 not upgraded.
Need to get 23.2 MB/23.2 MB of archives.
After this operation, 81.2 MB of additional disk space will be used.
Get:1 file:/«BUILDDIR»/resolver-_hyRVg/apt_archive ./ sbuild-build-depends-last-align-dummy 0.invalid.0 [824 B]
Get:2 http://172.17.0.1/private stretch-staging/main armhf liblocale-gettext-perl armhf 1.07-1+b1 [18.0 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf groff-base armhf 1.22.3-5 [1083 kB]
Get:4 http://172.17.0.1/private stretch-staging/main armhf bsdmainutils armhf 9.0.6 [177 kB]
Get:5 http://172.17.0.1/private stretch-staging/main armhf libpipeline1 armhf 1.4.1-2 [23.7 kB]
Get:6 http://172.17.0.1/private stretch-staging/main armhf man-db armhf 2.7.5-1 [975 kB]
Get:7 http://172.17.0.1/private stretch-staging/main armhf libpython2.7-minimal armhf 2.7.11-2 [380 kB]
Get:8 http://172.17.0.1/private stretch-staging/main armhf python2.7-minimal armhf 2.7.11-2 [1081 kB]
Get:9 http://172.17.0.1/private stretch-staging/main armhf python-minimal armhf 2.7.11-1 [40.0 kB]
Get:10 http://172.17.0.1/private stretch-staging/main armhf mime-support all 3.59 [36.4 kB]
Get:11 http://172.17.0.1/private stretch-staging/main armhf libexpat1 armhf 2.1.0-7 [59.8 kB]
Get:12 http://172.17.0.1/private stretch-staging/main armhf libffi6 armhf 3.2.1-4 [18.5 kB]
Get:13 http://172.17.0.1/private stretch-staging/main armhf libsqlite3-0 armhf 3.9.2-1 [404 kB]
Get:14 http://172.17.0.1/private stretch-staging/main armhf libssl1.0.2 armhf 1.0.2e-1 [883 kB]
Get:15 http://172.17.0.1/private stretch-staging/main armhf libpython2.7-stdlib armhf 2.7.11-2 [1836 kB]
Get:16 http://172.17.0.1/private stretch-staging/main armhf python2.7 armhf 2.7.11-2 [266 kB]
Get:17 http://172.17.0.1/private stretch-staging/main armhf libpython-stdlib armhf 2.7.11-1 [19.5 kB]
Get:18 http://172.17.0.1/private stretch-staging/main armhf python armhf 2.7.11-1 [150 kB]
Get:19 http://172.17.0.1/private stretch-staging/main armhf libjbig0 armhf 2.1-3.1 [27.5 kB]
Get:20 http://172.17.0.1/private stretch-staging/main armhf liblcms2-2 armhf 2.6-3 [113 kB]
Get:21 http://172.17.0.1/private stretch-staging/main armhf libunistring0 armhf 0.9.3-5.2 [253 kB]
Get:22 http://172.17.0.1/private stretch-staging/main armhf libmagic1 armhf 1:5.25-2 [250 kB]
Get:23 http://172.17.0.1/private stretch-staging/main armhf file armhf 1:5.25-2 [61.2 kB]
Get:24 http://172.17.0.1/private stretch-staging/main armhf gettext-base armhf 0.19.7-2 [111 kB]
Get:25 http://172.17.0.1/private stretch-staging/main armhf libicu55 armhf 55.1-7 [7380 kB]
Get:26 http://172.17.0.1/private stretch-staging/main armhf libxml2 armhf 2.9.3+dfsg1-1 [800 kB]
Get:27 http://172.17.0.1/private stretch-staging/main armhf libglib2.0-0 armhf 2.46.2-3 [2482 kB]
Get:28 http://172.17.0.1/private stretch-staging/main armhf libcroco3 armhf 0.6.11-1 [131 kB]
Get:29 http://172.17.0.1/private stretch-staging/main armhf gettext armhf 0.19.7-2 [1400 kB]
Get:30 http://172.17.0.1/private stretch-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:31 http://172.17.0.1/private stretch-staging/main armhf po-debconf all 1.0.18 [248 kB]
Get:32 http://172.17.0.1/private stretch-staging/main armhf libarchive-zip-perl all 1.56-2 [94.9 kB]
Get:33 http://172.17.0.1/private stretch-staging/main armhf libfile-stripnondeterminism-perl all 0.014-1 [10.6 kB]
Get:34 http://172.17.0.1/private stretch-staging/main armhf libtimedate-perl all 2.3000-2 [42.2 kB]
Get:35 http://172.17.0.1/private stretch-staging/main armhf dh-strip-nondeterminism all 0.014-1 [7472 B]
Get:36 http://172.17.0.1/private stretch-staging/main armhf debhelper all 9.20151225 [830 kB]
Get:37 http://172.17.0.1/private stretch-staging/main armhf help2man armhf 1.47.3 [154 kB]
Get:38 http://172.17.0.1/private stretch-staging/main armhf libfreetype6 armhf 2.6.1-0.1 [411 kB]
Get:39 http://172.17.0.1/private stretch-staging/main armhf libjpeg62-turbo armhf 1:1.4.1-2 [103 kB]
Get:40 http://172.17.0.1/private stretch-staging/main armhf libtiff5 armhf 4.0.6-1 [201 kB]
Get:41 http://172.17.0.1/private stretch-staging/main armhf libwebp5 armhf 0.4.4-1+b1 [175 kB]
Get:42 http://172.17.0.1/private stretch-staging/main armhf libwebpdemux1 armhf 0.4.4-1+b1 [52.8 kB]
Get:43 http://172.17.0.1/private stretch-staging/main armhf libwebpmux1 armhf 0.4.4-1+b1 [58.2 kB]
Get:44 http://172.17.0.1/private stretch-staging/main armhf python-pil armhf 3.0.0-1 [291 kB]
Get:45 http://172.17.0.1/private stretch-staging/main armhf python-imaging all 3.0.0-1 [9714 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 23.2 MB in 2s (7917 kB/s)
Selecting previously unselected package liblocale-gettext-perl.
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 12701 files and directories currently installed.)
Preparing to unpack .../liblocale-gettext-perl_1.07-1+b1_armhf.deb ...
Unpacking liblocale-gettext-perl (1.07-1+b1) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../groff-base_1.22.3-5_armhf.deb ...
Unpacking groff-base (1.22.3-5) ...
Selecting previously unselected package bsdmainutils.
Preparing to unpack .../bsdmainutils_9.0.6_armhf.deb ...
Unpacking bsdmainutils (9.0.6) ...
Selecting previously unselected package libpipeline1:armhf.
Preparing to unpack .../libpipeline1_1.4.1-2_armhf.deb ...
Unpacking libpipeline1:armhf (1.4.1-2) ...
Selecting previously unselected package man-db.
Preparing to unpack .../man-db_2.7.5-1_armhf.deb ...
Unpacking man-db (2.7.5-1) ...
Selecting previously unselected package libpython2.7-minimal:armhf.
Preparing to unpack .../libpython2.7-minimal_2.7.11-2_armhf.deb ...
Unpacking libpython2.7-minimal:armhf (2.7.11-2) ...
Selecting previously unselected package python2.7-minimal.
Preparing to unpack .../python2.7-minimal_2.7.11-2_armhf.deb ...
Unpacking python2.7-minimal (2.7.11-2) ...
Selecting previously unselected package python-minimal.
Preparing to unpack .../python-minimal_2.7.11-1_armhf.deb ...
Unpacking python-minimal (2.7.11-1) ...
Selecting previously unselected package mime-support.
Preparing to unpack .../mime-support_3.59_all.deb ...
Unpacking mime-support (3.59) ...
Selecting previously unselected package libexpat1:armhf.
Preparing to unpack .../libexpat1_2.1.0-7_armhf.deb ...
Unpacking libexpat1:armhf (2.1.0-7) ...
Selecting previously unselected package libffi6:armhf.
Preparing to unpack .../libffi6_3.2.1-4_armhf.deb ...
Unpacking libffi6:armhf (3.2.1-4) ...
Selecting previously unselected package libsqlite3-0:armhf.
Preparing to unpack .../libsqlite3-0_3.9.2-1_armhf.deb ...
Unpacking libsqlite3-0:armhf (3.9.2-1) ...
Selecting previously unselected package libssl1.0.2:armhf.
Preparing to unpack .../libssl1.0.2_1.0.2e-1_armhf.deb ...
Unpacking libssl1.0.2:armhf (1.0.2e-1) ...
Selecting previously unselected package libpython2.7-stdlib:armhf.
Preparing to unpack .../libpython2.7-stdlib_2.7.11-2_armhf.deb ...
Unpacking libpython2.7-stdlib:armhf (2.7.11-2) ...
Selecting previously unselected package python2.7.
Preparing to unpack .../python2.7_2.7.11-2_armhf.deb ...
Unpacking python2.7 (2.7.11-2) ...
Selecting previously unselected package libpython-stdlib:armhf.
Preparing to unpack .../libpython-stdlib_2.7.11-1_armhf.deb ...
Unpacking libpython-stdlib:armhf (2.7.11-1) ...
Processing triggers for libc-bin (2.21-6) ...
Setting up libpython2.7-minimal:armhf (2.7.11-2) ...
Setting up python2.7-minimal (2.7.11-2) ...
Setting up python-minimal (2.7.11-1) ...
Selecting previously unselected package python.
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 14079 files and directories currently installed.)
Preparing to unpack .../python_2.7.11-1_armhf.deb ...
Unpacking python (2.7.11-1) ...
Selecting previously unselected package libjbig0:armhf.
Preparing to unpack .../libjbig0_2.1-3.1_armhf.deb ...
Unpacking libjbig0:armhf (2.1-3.1) ...
Selecting previously unselected package liblcms2-2:armhf.
Preparing to unpack .../liblcms2-2_2.6-3_armhf.deb ...
Unpacking liblcms2-2:armhf (2.6-3) ...
Selecting previously unselected package libunistring0:armhf.
Preparing to unpack .../libunistring0_0.9.3-5.2_armhf.deb ...
Unpacking libunistring0:armhf (0.9.3-5.2) ...
Selecting previously unselected package libmagic1:armhf.
Preparing to unpack .../libmagic1_1%3a5.25-2_armhf.deb ...
Unpacking libmagic1:armhf (1:5.25-2) ...
Selecting previously unselected package file.
Preparing to unpack .../file_1%3a5.25-2_armhf.deb ...
Unpacking file (1:5.25-2) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../gettext-base_0.19.7-2_armhf.deb ...
Unpacking gettext-base (0.19.7-2) ...
Selecting previously unselected package libicu55:armhf.
Preparing to unpack .../libicu55_55.1-7_armhf.deb ...
Unpacking libicu55:armhf (55.1-7) ...
Selecting previously unselected package libxml2:armhf.
Preparing to unpack .../libxml2_2.9.3+dfsg1-1_armhf.deb ...
Unpacking libxml2:armhf (2.9.3+dfsg1-1) ...
Selecting previously unselected package libglib2.0-0:armhf.
Preparing to unpack .../libglib2.0-0_2.46.2-3_armhf.deb ...
Unpacking libglib2.0-0:armhf (2.46.2-3) ...
Selecting previously unselected package libcroco3:armhf.
Preparing to unpack .../libcroco3_0.6.11-1_armhf.deb ...
Unpacking libcroco3:armhf (0.6.11-1) ...
Selecting previously unselected package gettext.
Preparing to unpack .../gettext_0.19.7-2_armhf.deb ...
Unpacking gettext (0.19.7-2) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../intltool-debian_0.35.0+20060710.4_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.4) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../po-debconf_1.0.18_all.deb ...
Unpacking po-debconf (1.0.18) ...
Selecting previously unselected package libarchive-zip-perl.
Preparing to unpack .../libarchive-zip-perl_1.56-2_all.deb ...
Unpacking libarchive-zip-perl (1.56-2) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
Preparing to unpack .../libfile-stripnondeterminism-perl_0.014-1_all.deb ...
Unpacking libfile-stripnondeterminism-perl (0.014-1) ...
Selecting previously unselected package libtimedate-perl.
Preparing to unpack .../libtimedate-perl_2.3000-2_all.deb ...
Unpacking libtimedate-perl (2.3000-2) ...
Selecting previously unselected package dh-strip-nondeterminism.
Preparing to unpack .../dh-strip-nondeterminism_0.014-1_all.deb ...
Unpacking dh-strip-nondeterminism (0.014-1) ...
Selecting previously unselected package debhelper.
Preparing to unpack .../debhelper_9.20151225_all.deb ...
Unpacking debhelper (9.20151225) ...
Selecting previously unselected package help2man.
Preparing to unpack .../help2man_1.47.3_armhf.deb ...
Unpacking help2man (1.47.3) ...
Selecting previously unselected package libfreetype6:armhf.
Preparing to unpack .../libfreetype6_2.6.1-0.1_armhf.deb ...
Unpacking libfreetype6:armhf (2.6.1-0.1) ...
Selecting previously unselected package libjpeg62-turbo:armhf.
Preparing to unpack .../libjpeg62-turbo_1%3a1.4.1-2_armhf.deb ...
Unpacking libjpeg62-turbo:armhf (1:1.4.1-2) ...
Selecting previously unselected package libtiff5:armhf.
Preparing to unpack .../libtiff5_4.0.6-1_armhf.deb ...
Unpacking libtiff5:armhf (4.0.6-1) ...
Selecting previously unselected package libwebp5:armhf.
Preparing to unpack .../libwebp5_0.4.4-1+b1_armhf.deb ...
Unpacking libwebp5:armhf (0.4.4-1+b1) ...
Selecting previously unselected package libwebpdemux1:armhf.
Preparing to unpack .../libwebpdemux1_0.4.4-1+b1_armhf.deb ...
Unpacking libwebpdemux1:armhf (0.4.4-1+b1) ...
Selecting previously unselected package libwebpmux1:armhf.
Preparing to unpack .../libwebpmux1_0.4.4-1+b1_armhf.deb ...
Unpacking libwebpmux1:armhf (0.4.4-1+b1) ...
Selecting previously unselected package python-pil:armhf.
Preparing to unpack .../python-pil_3.0.0-1_armhf.deb ...
Unpacking python-pil:armhf (3.0.0-1) ...
Selecting previously unselected package python-imaging.
Preparing to unpack .../python-imaging_3.0.0-1_all.deb ...
Unpacking python-imaging (3.0.0-1) ...
Selecting previously unselected package sbuild-build-depends-last-align-dummy.
Preparing to unpack .../sbuild-build-depends-last-align-dummy.deb ...
Unpacking sbuild-build-depends-last-align-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.21-6) ...
Setting up liblocale-gettext-perl (1.07-1+b1) ...
Setting up groff-base (1.22.3-5) ...
Setting up bsdmainutils (9.0.6) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up libpipeline1:armhf (1.4.1-2) ...
Setting up man-db (2.7.5-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up mime-support (3.59) ...
Setting up libexpat1:armhf (2.1.0-7) ...
Setting up libffi6:armhf (3.2.1-4) ...
Setting up libsqlite3-0:armhf (3.9.2-1) ...
Setting up libssl1.0.2:armhf (1.0.2e-1) ...
Setting up libpython2.7-stdlib:armhf (2.7.11-2) ...
Setting up python2.7 (2.7.11-2) ...
Setting up libpython-stdlib:armhf (2.7.11-1) ...
Setting up python (2.7.11-1) ...
Setting up libjbig0:armhf (2.1-3.1) ...
Setting up liblcms2-2:armhf (2.6-3) ...
Setting up libunistring0:armhf (0.9.3-5.2) ...
Setting up libmagic1:armhf (1:5.25-2) ...
Setting up file (1:5.25-2) ...
Setting up gettext-base (0.19.7-2) ...
Setting up libicu55:armhf (55.1-7) ...
Setting up libxml2:armhf (2.9.3+dfsg1-1) ...
Setting up libglib2.0-0:armhf (2.46.2-3) ...
No schema files found: doing nothing.
Setting up libcroco3:armhf (0.6.11-1) ...
Setting up gettext (0.19.7-2) ...
Setting up intltool-debian (0.35.0+20060710.4) ...
Setting up po-debconf (1.0.18) ...
Setting up libarchive-zip-perl (1.56-2) ...
Setting up libfile-stripnondeterminism-perl (0.014-1) ...
Setting up libtimedate-perl (2.3000-2) ...
Setting up help2man (1.47.3) ...
Setting up libfreetype6:armhf (2.6.1-0.1) ...
Setting up libjpeg62-turbo:armhf (1:1.4.1-2) ...
Setting up libtiff5:armhf (4.0.6-1) ...
Setting up libwebp5:armhf (0.4.4-1+b1) ...
Setting up libwebpdemux1:armhf (0.4.4-1+b1) ...
Setting up libwebpmux1:armhf (0.4.4-1+b1) ...
Setting up python-pil:armhf (3.0.0-1) ...
Setting up python-imaging (3.0.0-1) ...
Setting up debhelper (9.20151225) ...
Setting up sbuild-build-depends-last-align-dummy (0.invalid.0) ...
Setting up dh-strip-nondeterminism (0.014-1) ...
Processing triggers for libc-bin (2.21-6) ...
W: No sandbox user '_apt' on the system, can not drop privileges
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build environment │
└──────────────────────────────────────────────────────────────────────────────┘
Kernel: Linux 3.19.0-trunk-armmp armhf (armv7l)
Toolchain package versions: binutils_2.25.90.20151209-1 dpkg-dev_1.18.4 g++-5_5.3.1-4+rpi1 gcc-5_5.3.1-4+rpi1 libc6-dev_2.21-6 libstdc++-5-dev_5.3.1-4+rpi1 libstdc++6_5.3.1-4+rpi1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch
Package versions: adduser_3.113+nmu3 apt_1.1.5 base-files_9.4+rpi1 base-passwd_3.5.38 bash_4.3-14 binutils_2.25.90.20151209-1 bsdmainutils_9.0.6 bsdutils_1:2.27.1-1 build-essential_11.7 bzip2_1.0.6-8 coreutils_8.23-4 cpio_2.11+dfsg-4.1 cpp_4:5.3.1-1+rpi1 cpp-5_5.3.1-4+rpi1 dash_0.5.7-4 debconf_1.5.58 debfoster_2.7-2 debhelper_9.20151225 debianutils_4.5.1 dh-strip-nondeterminism_0.014-1 diffutils_1:3.3-3 dmsetup_2:1.02.114-1 dpkg_1.18.4 dpkg-dev_1.18.4 e2fslibs_1.42.13-1 e2fsprogs_1.42.13-1 fakeroot_1.20.2-1 file_1:5.25-2 findutils_4.4.2-10 g++_4:5.3.1-1+rpi1 g++-5_5.3.1-4+rpi1 gcc_4:5.3.1-1+rpi1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-3 gcc-4.9-base_4.9.3-10 gcc-5_5.3.1-4+rpi1 gcc-5-base_5.3.1-4+rpi1 gettext_0.19.7-2 gettext-base_0.19.7-2 gnupg_1.4.20-1 gpgv_1.4.20-1 grep_2.22-1 groff-base_1.22.3-5 gzip_1.6-4 help2man_1.47.3 hostname_3.16 init_1.24 init-system-helpers_1.24 initramfs-tools_0.120 initscripts_2.88dsf-59.2 insserv_1.14.0-5 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-4+rpi1 kmod_21-1 libacl1_2.2.52-2 libapparmor1_2.10-2+b2 libapt-pkg4.16_1.0.10.2 libapt-pkg5.0_1.1.5 libarchive-zip-perl_1.56-2 libasan2_5.3.1-4+rpi1 libatomic1_5.3.1-4+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.4.5-1 libaudit1_1:2.4.5-1 libblkid1_2.27.1-1 libbz2-1.0_1.0.6-8 libc-bin_2.21-6 libc-dev-bin_2.21-6 libc6_2.21-6 libc6-dev_2.21-6 libcap2_1:2.24-12 libcap2-bin_1:2.24-12 libcc1-0_5.3.1-4+rpi1 libcomerr2_1.42.13-1 libcroco3_0.6.11-1 libcryptsetup4_2:1.6.6-5 libdb5.3_5.3.28-11 libdbus-1-3_1.10.6-1 libdebconfclient0_0.201 libdevmapper1.02.1_2:1.02.114-1 libdpkg-perl_1.18.4 libdrm2_2.4.65-3 libexpat1_2.1.0-7 libfakeroot_1.20.2-1 libfdisk1_2.27.1-1 libffi6_3.2.1-4 libfile-stripnondeterminism-perl_0.014-1 libfreetype6_2.6.1-0.1 libgc1c2_1:7.4.2-7.3 libgcc-5-dev_5.3.1-4+rpi1 libgcc1_1:5.3.1-4+rpi1 libgcrypt20_1.6.4-4 libgdbm3_1.8.3-13.1 libglib2.0-0_2.46.2-3 libgmp10_2:6.1.0+dfsg-2 libgomp1_5.3.1-4+rpi1 libgpg-error0_1.21-1 libicu55_55.1-7 libisl13_0.14-2 libisl15_0.15-3 libjbig0_2.1-3.1 libjpeg62-turbo_1:1.4.1-2 libklibc_2.0.4-4+rpi1 libkmod2_21-1 liblcms2-2_2.6-3 liblocale-gettext-perl_1.07-1+b1 liblzma5_5.1.1alpha+20120614-2.1 libmagic1_1:5.25-2 libmount1_2.27.1-1 libmpc3_1.0.3-1 libmpfr4_3.1.3-2 libncurses5_6.0+20151024-2 libncursesw5_6.0+20151024-2 libpam-modules_1.1.8-3.1 libpam-modules-bin_1.1.8-3.1 libpam-runtime_1.1.8-3.1 libpam0g_1.1.8-3.1 libpcre3_2:8.35-8 libperl5.22_5.22.1-3 libpipeline1_1.4.1-2 libplymouth4_0.9.2-3 libpng12-0_1.2.54-1 libprocps4_2:3.3.10-2 libpython-stdlib_2.7.11-1 libpython2.7-minimal_2.7.11-2 libpython2.7-stdlib_2.7.11-2 libreadline6_6.3-8+b3 libseccomp2_2.2.3-2 libselinux1_2.4-3 libsemanage-common_2.4-3 libsemanage1_2.4-3 libsepol1_2.4-2 libsmartcols1_2.27.1-1 libsqlite3-0_3.9.2-1 libss2_1.42.13-1 libssl1.0.2_1.0.2e-1 libstdc++-5-dev_5.3.1-4+rpi1 libstdc++6_5.3.1-4+rpi1 libsystemd0_228-2 libtiff5_4.0.6-1 libtimedate-perl_2.3000-2 libtinfo5_6.0+20151024-2 libubsan0_5.3.1-4+rpi1 libudev1_228-2 libunistring0_0.9.3-5.2 libusb-0.1-4_2:0.1.12-27 libustr-1.0-1_1.0.4-5 libuuid1_2.27.1-1 libwebp5_0.4.4-1+b1 libwebpdemux1_0.4.4-1+b1 libwebpmux1_0.4.4-1+b1 libxml2_2.9.3+dfsg1-1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch login_1:4.2-3.1 lsb-base_4.1+Debian13+rpi1+nmu1 make_4.0-8.2 makedev_2.3.1-93 man-db_2.7.5-1 manpages_3.74-1 mawk_1.3.3-17 mime-support_3.59 mount_2.27.1-1 multiarch-support_2.21-6 ncurses-base_6.0+20151024-2 ncurses-bin_6.0+20151024-2 passwd_1:4.2-3.1 patch_2.7.5-1 perl_5.22.1-3 perl-base_5.22.1-3 perl-modules-5.22_5.22.1-3 plymouth_0.9.2-3 po-debconf_1.0.18 procps_2:3.3.10-2 python_2.7.11-1 python-imaging_3.0.0-1 python-minimal_2.7.11-1 python-pil_3.0.0-1 python2.7_2.7.11-2 python2.7-minimal_2.7.11-2 raspbian-archive-keyring_20120528.2 readline-common_6.3-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-last-align-dummy_0.invalid.0 sed_4.2.2-6.1 sensible-utils_0.0.9 startpar_0.59-3 systemd_228-2 systemd-sysv_228-2 sysv-rc_2.88dsf-59.2 sysvinit-utils_2.88dsf-59.2 tar_1.28-2.1 tzdata_2015g-1 udev_228-2 util-linux_2.27.1-1 xz-utils_5.1.1alpha+20120614-2.1 zlib1g_1:1.2.8.dfsg-2+b1
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
└──────────────────────────────────────────────────────────────────────────────┘
Unpack source
─────────────
gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made Thu Dec 31 08:30:43 2015 UTC using RSA key ID D1C646D1
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./last-align_712-1.dsc
dpkg-source: info: extracting last-align in last-align-712
dpkg-source: info: unpacking last-align_712.orig.tar.xz
dpkg-source: info: unpacking last-align_712-1.debian.tar.xz
Check disc space
────────────────
Sufficient free space for build
User Environment
────────────────
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LOGNAME=root
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=stretch-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=stretch-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=stretch-staging-armhf-sbuild-88e9560c-6586-4645-ba2c-a10fdb0c8007
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=xterm
USER=buildd
dpkg-buildpackage
─────────────────
dpkg-buildpackage: source package last-align
dpkg-buildpackage: source version 712-1
dpkg-buildpackage: source distribution unstable
dpkg-source --before-build last-align-712
dpkg-buildpackage: host architecture armhf
fakeroot debian/rules clean
dh clean
dh_testdir
dh_auto_clean
make -j1 clean
make[1]: Entering directory '/«PKGBUILDDIR»'
make[2]: Entering directory '/«PKGBUILDDIR»/src'
rm -f lastdb lastal last-split last-merge-batches last-pair-probs *.o */*.o
make[2]: Leaving directory '/«PKGBUILDDIR»/src'
make[1]: Leaving directory '/«PKGBUILDDIR»'
dh_clean
debian/rules build-arch
dh build-arch
dh_testdir -a
dh_auto_configure -a
debian/rules override_dh_auto_build
make[1]: Entering directory '/«PKGBUILDDIR»'
make all CXXFLAGS="-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11" CFLAGS="-g -O2 -fstack-protector-strong -Wformat -Werror=format-security" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro -lpthread"
make[2]: Entering directory '/«PKGBUILDDIR»'
make[3]: Entering directory '/«PKGBUILDDIR»/src'
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o Alphabet.o Alphabet.cc
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o MultiSequence.o MultiSequence.cc
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o CyclicSubsetSeed.o CyclicSubsetSeed.cc
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o SubsetSuffixArray.o SubsetSuffixArray.cc
if test -e ../.hg ; \
then echo \"`hg id -n`\" | cmp -s version.hh - || echo \"`hg id -n`\" > version.hh ; \
elif test -e ../.hg_archival.txt ; \
then echo \"`grep latesttagdistance ../.hg_archival.txt | cut -d' ' -f2`\" | cmp -s version.hh - || echo \"`grep latesttagdistance ../.hg_archival.txt | cut -d' ' -f2`\" > version.hh ; \
else test -e version.hh || echo \"UNKNOWN\" > version.hh ; \
fi
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o LastdbArguments.o LastdbArguments.cc
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o io.o io.cc
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o fileMap.o fileMap.cc
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o TantanMasker.o TantanMasker.cc
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o ScoreMatrix.o ScoreMatrix.cc
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o LambdaCalculator.o LambdaCalculator.cc
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o tantan.o tantan.cc
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o SubsetSuffixArraySort.o SubsetSuffixArraySort.cc
SubsetSuffixArraySort.cc: In member function 'void cbrc::SubsetSuffixArray::sortIndex(const uchar*, cbrc::SubsetSuffixArray::indexT, int)':
SubsetSuffixArraySort.cc:334:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if( end - beg <= maxUnsortedInterval && depth >= minLength ) continue;
^
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o MultiSequenceQual.o MultiSequenceQual.cc
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o lastdb.o lastdb.cc
g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -Wl,-z,relro -lpthread -o lastdb Alphabet.o MultiSequence.o CyclicSubsetSeed.o SubsetSuffixArray.o LastdbArguments.o io.o fileMap.o TantanMasker.o ScoreMatrix.o LambdaCalculator.o tantan.o SubsetSuffixArraySort.o MultiSequenceQual.o lastdb.o
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o LastalArguments.o LastalArguments.cc
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o DiagonalTable.o DiagonalTable.cc
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o SegmentPair.o SegmentPair.cc
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o Alignment.o Alignment.cc
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o GappedXdropAligner.o GappedXdropAligner.cc
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o SegmentPairPot.o SegmentPairPot.cc
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o AlignmentPot.o AlignmentPot.cc
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o GeneralizedAffineGapCosts.o GeneralizedAffineGapCosts.cc
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o Centroid.o Centroid.cc
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o TwoQualityScoreMatrix.o TwoQualityScoreMatrix.cc
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o OneQualityScoreMatrix.o OneQualityScoreMatrix.cc
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o QualityPssmMaker.o QualityPssmMaker.cc
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o GeneticCode.o GeneticCode.cc
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o LastEvaluer.o LastEvaluer.cc
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o gaplessXdrop.o gaplessXdrop.cc
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o gaplessPssmXdrop.o gaplessPssmXdrop.cc
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o gaplessTwoQualityXdrop.o gaplessTwoQualityXdrop.cc
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o SubsetSuffixArraySearch.o SubsetSuffixArraySearch.cc
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o AlignmentWrite.o AlignmentWrite.cc
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o GappedXdropAlignerPssm.o GappedXdropAlignerPssm.cc
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o GappedXdropAligner2qual.o GappedXdropAligner2qual.cc
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o GappedXdropAligner3frame.o GappedXdropAligner3frame.cc
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o lastal.o lastal.cc
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -c -o alp/sls_alignment_evaluer.o alp/sls_alignment_evaluer.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -c -o alp/sls_pvalues.o alp/sls_pvalues.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -c -o alp/sls_alp_sim.o alp/sls_alp_sim.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -c -o alp/sls_alp_regression.o alp/sls_alp_regression.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -c -o alp/sls_alp_data.o alp/sls_alp_data.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -c -o alp/sls_alp.o alp/sls_alp.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -c -o alp/sls_basic.o alp/sls_basic.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -c -o alp/njn_localmaxstatmatrix.o alp/njn_localmaxstatmatrix.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -c -o alp/njn_localmaxstat.o alp/njn_localmaxstat.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -c -o alp/njn_localmaxstatutil.o alp/njn_localmaxstatutil.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -c -o alp/njn_dynprogprob.o alp/njn_dynprogprob.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -c -o alp/njn_dynprogprobproto.o alp/njn_dynprogprobproto.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -c -o alp/njn_dynprogproblim.o alp/njn_dynprogproblim.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -c -o alp/njn_ioutil.o alp/njn_ioutil.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -c -o alp/njn_random.o alp/njn_random.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -c -o alp/sls_falp_alignment_evaluer.o alp/sls_falp_alignment_evaluer.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -c -o alp/sls_fsa1_pvalues.o alp/sls_fsa1_pvalues.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -c -o alp/sls_fsa1_utils.o alp/sls_fsa1_utils.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -c -o alp/sls_fsa1.o alp/sls_fsa1.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -c -o alp/sls_fsa1_parameters.o alp/sls_fsa1_parameters.cpp
g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -Wl,-z,relro -lpthread -o lastal Alphabet.o MultiSequence.o CyclicSubsetSeed.o SubsetSuffixArray.o LastalArguments.o io.o fileMap.o TantanMasker.o ScoreMatrix.o tantan.o DiagonalTable.o SegmentPair.o Alignment.o GappedXdropAligner.o SegmentPairPot.o AlignmentPot.o GeneralizedAffineGapCosts.o Centroid.o LambdaCalculator.o TwoQualityScoreMatrix.o OneQualityScoreMatrix.o QualityPssmMaker.o GeneticCode.o LastEvaluer.o gaplessXdrop.o gaplessPssmXdrop.o gaplessTwoQualityXdrop.o SubsetSuffixArraySearch.o AlignmentWrite.o MultiSequenceQual.o GappedXdropAlignerPssm.o GappedXdropAligner2qual.o GappedXdropAligner3frame.o lastal.o alp/sls_alignment_evaluer.o alp/sls_pvalues.o alp/sls_alp_sim.o alp/sls_alp_regression.o alp/sls_alp_data.o alp/sls_alp.o alp/sls_basic.o alp/njn_localmaxstatmatrix.o alp/njn_localmaxstat.o alp/njn_localmaxstatutil.o alp/njn_dynprogprob.o alp/njn_dynprogprobproto.o alp/njn_dynprogproblim.o alp/njn_ioutil.o alp/njn_random.o alp/sls_falp_alignment_evaluer.o alp/sls_fsa1_pvalues.o alp/sls_fsa1_utils.o alp/sls_fsa1.o alp/sls_fsa1_parameters.o
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o split/cbrc_linalg.o split/cbrc_linalg.cc
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o split/last-split.o split/last-split.cc
split/last-split.cc: In function 'void doOneQuery(std::vector<cbrc::UnsplitAlignment>::const_iterator, std::vector<cbrc::UnsplitAlignment>::const_iterator, cbrc::SplitAligner&, const LastSplitOptions&, bool)':
split/last-split.cc:151:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (unsigned i = 0; i < end - beg; ++i) {
^
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o split/cbrc_split_aligner.o split/cbrc_split_aligner.cc
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o split/last-split-main.o split/last-split-main.cc
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o split/cbrc_unsplit_alignment.o split/cbrc_unsplit_alignment.cc
g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -Wl,-z,relro -lpthread -o last-split Alphabet.o MultiSequence.o fileMap.o split/cbrc_linalg.o split/last-split.o split/cbrc_split_aligner.o split/last-split-main.o split/cbrc_unsplit_alignment.o
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o last-merge-batches.o last-merge-batches.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -lpthread -o last-merge-batches last-merge-batches.o
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o last-pair-probs.o last-pair-probs.cc
last-pair-probs.cc: In function 'Alignment parseMaf(const char* const*, const char* const*, char, double, const std::set<std::__cxx11::basic_string<char> >&)':
last-pair-probs.cc:430:74: warning: 'qStrand' may be used uninitialized in this function [-Wmaybe-uninitialized]
linesBeg, linesEnd, strand, scale, circularChroms);
^
last-pair-probs.cc:430:74: warning: 'rName' may be used uninitialized in this function [-Wmaybe-uninitialized]
last-pair-probs.cc:430:74: warning: 'qName' may be used uninitialized in this function [-Wmaybe-uninitialized]
last-pair-probs.cc: In function 'bool readBatch(std::istream&, char, double, const std::set<std::__cxx11::basic_string<char> >&, std::vector<char>&, std::vector<const char*>&, std::vector<Alignment>&)':
last-pair-probs.cc:453:74: warning: 'rName' may be used uninitialized in this function [-Wmaybe-uninitialized]
linesBeg, linesEnd, strand, scale, circularChroms);
^
last-pair-probs.cc:437:10: note: 'rName' was declared here
String rName, qName;
^
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -I. -c -o last-pair-probs-main.o last-pair-probs-main.cc
g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -Wl,-z,relro -lpthread -o last-pair-probs last-pair-probs.o last-pair-probs-main.o io.o
make[3]: Leaving directory '/«PKGBUILDDIR»/src'
make[2]: Leaving directory '/«PKGBUILDDIR»'
make[1]: Leaving directory '/«PKGBUILDDIR»'
dh_auto_test -a
fakeroot debian/rules binary-arch
dh binary-arch
dh_testroot -a
dh_prep -a
debian/rules override_dh_auto_install
make[1]: Entering directory '/«PKGBUILDDIR»'
make install prefix=/«PKGBUILDDIR»/debian/last-align/usr
make[2]: Entering directory '/«PKGBUILDDIR»'
make[3]: Entering directory '/«PKGBUILDDIR»/src'
if test -e ../.hg ; \
then echo \"`hg id -n`\" | cmp -s version.hh - || echo \"`hg id -n`\" > version.hh ; \
elif test -e ../.hg_archival.txt ; \
then echo \"`grep latesttagdistance ../.hg_archival.txt | cut -d' ' -f2`\" | cmp -s version.hh - || echo \"`grep latesttagdistance ../.hg_archival.txt | cut -d' ' -f2`\" > version.hh ; \
else test -e version.hh || echo \"UNKNOWN\" > version.hh ; \
fi
make[3]: Leaving directory '/«PKGBUILDDIR»/src'
mkdir -p /«PKGBUILDDIR»/debian/last-align/usr/bin
cp src/last?? src/last-split src/last-merge-batches src/last-pair-probs scripts/* /«PKGBUILDDIR»/debian/last-align/usr/bin
make[2]: Leaving directory '/«PKGBUILDDIR»'
make[1]: Leaving directory '/«PKGBUILDDIR»'
dh_installdocs -a
debian/rules override_dh_installchangelogs
make[1]: Entering directory '/«PKGBUILDDIR»'
dh_installchangelogs ChangeLog.txt
make[1]: Leaving directory '/«PKGBUILDDIR»'
dh_installexamples -a
debian/rules override_dh_installman
make[1]: Entering directory '/«PKGBUILDDIR»'
dh_installman
help2man --no-info --version-string="712" \
--name='make a dotplot, a.k.a. Oxford Grid, of alignments in LAST tabular format' \
/«PKGBUILDDIR»/scripts/last-dotplot > /«PKGBUILDDIR»/debian/last-align/usr/share/man/man1//last-dotplot.1
help2man --no-info --version-string="712" \
--name="genome-scale comparison of biological sequences" \
--help-option="-h" \
/«PKGBUILDDIR»/src/lastal > /«PKGBUILDDIR»/debian/last-align/usr/share/man/man1//lastal.1
#help2man --no-info --version-string="712" \
# --name="genome-scale comparison of biological sequences" \
# --help-option="-h" \
# /«PKGBUILDDIR»/src/lastdb > /«PKGBUILDDIR»/debian/last-align/usr/share/man/man1//lastdb.1
help2man --no-info --version-string="712" \
--name="Sort MAF-format alignments by sequence name" \
/«PKGBUILDDIR»/scripts/maf-sort > /«PKGBUILDDIR»/debian/last-align/usr/share/man/man1//maf-sort.1
help2man --no-info --version-string="712" \
--name="changes the order of the sequences in MAF-format alignments" \
/«PKGBUILDDIR»/scripts/maf-swap > /«PKGBUILDDIR»/debian/last-align/usr/share/man/man1//maf-swap.1
#help2man --no-info --version-string="712" \
# --name="Add extra column with mapping probabilities" \
# /«PKGBUILDDIR»/scripts/last-map-probs > /«PKGBUILDDIR»/debian/last-align/usr/share/man/man1//last-map-probs.1
# This script has not enough to put in a manual page.
#help2man --no-info --version-string="712" \
# --name="Read files of lastal output, merge corresponding batches, and write them." \
# /«PKGBUILDDIR»/scripts/last-merge-batches > /«PKGBUILDDIR»/debian/last-align/usr/share/man/man1//last-merge-batches.1
#help2man --no-info --version-string="712" \
# --name="Clean up MAF-format alignments" \
# /«PKGBUILDDIR»/scripts/last-reduce-alignments > /«PKGBUILDDIR»/debian/last-align/usr/share/man/man1//last-reduce-alignments.1
#help2man --no-info --version-string="712" \
# --name='Remove MAF-format alignments which are "dominated" by others' \
# /«PKGBUILDDIR»/scripts/last-remove-dominated > /«PKGBUILDDIR»/debian/last-align/usr/share/man/man1//last-remove-dominated.1
help2man --no-info --version-string="712" \
--name='Estimates "split" or "spliced" alignments.' \
/«PKGBUILDDIR»/src/last-split > /«PKGBUILDDIR»/debian/last-align/usr/share/man/man1//last-split.1
help2man --no-info --version-string="712" \
--name="Join two or more sets of MAF-format multiple alignments" \
/«PKGBUILDDIR»/scripts/maf-join > /«PKGBUILDDIR»/debian/last-align/usr/share/man/man1//maf-join.1
help2man --no-info --version-string="712" \
--name="Convert MAF-format alignments to tabular format" \
/«PKGBUILDDIR»/scripts/maf-convert > /«PKGBUILDDIR»/debian/last-align/usr/share/man/man1//maf-convert.1
help2man --no-info --version-string="712" \
--name="Read 2 fastq files, and write them interleaved" \
/«PKGBUILDDIR»/scripts/fastq-interleave > /«PKGBUILDDIR»/debian/last-align/usr/share/man/man1//fastq-interleave.1
help2man --no-info --version-string="712" \
--name="Read files of lastal output, merge corresponding batches, and write them" \
/«PKGBUILDDIR»/src/last-merge-batches > /«PKGBUILDDIR»/debian/last-align/usr/share/man/man1//last-merge-batches.1
#help2man --no-info --version-string="712" \
# --name="Read alignments of paired DNA reads to a genome, and do estimations" \
# /«PKGBUILDDIR»/src/last-pair-probs > /«PKGBUILDDIR»/debian/last-align/usr/share/man/man1//last-pair-probs.1
help2man --no-info --version-string="712" \
--name="Get alignments that have a segment with score >= threshold, with gentle masking of lowercase letters" \
/«PKGBUILDDIR»/scripts/last-postmask > /«PKGBUILDDIR»/debian/last-align/usr/share/man/man1//last-postmask.1
help2man --no-info --version-string="712" \
--name="Try to find suitable score parameters for aligning the given sequences" \
/«PKGBUILDDIR»/scripts/last-train > /«PKGBUILDDIR»/debian/last-align/usr/share/man/man1//last-train.1
make[1]: Leaving directory '/«PKGBUILDDIR»'
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
dh_fixperms -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dpkg-shlibdeps: warning: debian/last-align/usr/bin/lastdb contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/last-align/usr/bin/last-split contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/last-align/usr/bin/last-pair-probs contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/last-align/usr/bin/lastal contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/last-align/usr/bin/last-merge-batches debian/last-align/usr/bin/lastdb debian/last-align/usr/bin/last-split debian/last-align/usr/bin/last-pair-probs debian/last-align/usr/bin/lastal were not linked against ld-linux-armhf.so.3 (they use none of the library's symbols)
dh_installdeb -a
dh_gencontrol -a
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'last-align-dbgsym' in '../last-align-dbgsym_712-1_armhf.deb'.
dpkg-deb: building package 'last-align' in '../last-align_712-1_armhf.deb'.
dpkg-genchanges -B -mRaspbian wandboard test autobuilder <root@raspbian.org> >../last-align_712-1_armhf.changes
dpkg-genchanges: warning: package last-align-dbgsym listed in files list but not in control info
dpkg-genchanges: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build last-align-712
dpkg-buildpackage: binary-only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
Build finished at 20160110-1306
Finished
────────
I: Built successfully
┌──────────────────────────────────────────────────────────────────────────────┐
│ Post Build Chroot │
└──────────────────────────────────────────────────────────────────────────────┘
┌──────────────────────────────────────────────────────────────────────────────┐
│ Changes │
└──────────────────────────────────────────────────────────────────────────────┘
last-align_712-1_armhf.changes:
───────────────────────────────
Format: 1.8
Date: Thu, 31 Dec 2015 09:18:43 +0100
Source: last-align
Binary: last-align
Architecture: armhf
Version: 712-1
Distribution: stretch-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
last-align - genome-scale comparison of biological sequences
Changes:
last-align (712-1) unstable; urgency=medium
.
[ Andreas Tille ]
* New upstream version
* Moved to Git
* Add missing manpages
* Depends: parallel (instead of Suggests)
.
[ Julien Lamy ]
* debian/rules:
- Add missing build flags
- Do not try to create manpage for removed tool
Checksums-Sha1:
6feccd4a207dfc46d25b5f749f67133b04488d0a 4081110 last-align-dbgsym_712-1_armhf.deb
a6945af7a31609836d3ff6ee25a487b0142bd152 544124 last-align_712-1_armhf.deb
Checksums-Sha256:
81c497a783ec3910e6312e1233017217072a4eec10cfb5671085e4c3be59e350 4081110 last-align-dbgsym_712-1_armhf.deb
7d50a46d2bf6618ee13d21317bf96f9621a4d9d745ac2012fa621aba4cfbcb01 544124 last-align_712-1_armhf.deb
Files:
a677b792bccfd1e6fe6a8bb2e1e06309 4081110 debug extra last-align-dbgsym_712-1_armhf.deb
eb8c539c67d2f9cc6740ad8cdeb72f2e 544124 science optional last-align_712-1_armhf.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
last-align-dbgsym_712-1_armhf.deb
─────────────────────────────────
new debian package, version 2.0.
size 4081110 bytes: control archive=713 bytes.
571 bytes, 13 lines control
530 bytes, 5 lines md5sums
Package: last-align-dbgsym
Source: last-align
Version: 712-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 4210
Depends: last-align (= 712-1)
Section: debug
Priority: extra
Homepage: http://last.cbrc.jp/
Description: Debug symbols for last-align
Auto-Built-Package: debug-symbols
Build-Ids: 4ae07f1fc1f256e09b2f6d2ec0250c514969f6fe 777272cbccd07f30d25d91b0962627318604eef2 781fe7334dee9859dcf4f94f5d8fe48b97f849b8 ac74cdafb4b1fa85cb2e77f53ecae9c3a9fa513f cb00bc0730cdc1a5f16514410dca655a76dd6cd3
drwxr-xr-x root/root 0 2016-01-10 13:06 ./
drwxr-xr-x root/root 0 2016-01-10 13:06 ./usr/
drwxr-xr-x root/root 0 2016-01-10 13:06 ./usr/lib/
drwxr-xr-x root/root 0 2016-01-10 13:06 ./usr/lib/debug/
drwxr-xr-x root/root 0 2016-01-10 13:06 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2016-01-10 13:06 ./usr/lib/debug/.build-id/4a/
-rw-r--r-- root/root 572020 2016-01-10 13:06 ./usr/lib/debug/.build-id/4a/e07f1fc1f256e09b2f6d2ec0250c514969f6fe.debug
drwxr-xr-x root/root 0 2016-01-10 13:06 ./usr/lib/debug/.build-id/77/
-rw-r--r-- root/root 729364 2016-01-10 13:06 ./usr/lib/debug/.build-id/77/7272cbccd07f30d25d91b0962627318604eef2.debug
drwxr-xr-x root/root 0 2016-01-10 13:06 ./usr/lib/debug/.build-id/78/
-rw-r--r-- root/root 9704 2016-01-10 13:06 ./usr/lib/debug/.build-id/78/1fe7334dee9859dcf4f94f5d8fe48b97f849b8.debug
drwxr-xr-x root/root 0 2016-01-10 13:06 ./usr/lib/debug/.build-id/ac/
-rw-r--r-- root/root 230368 2016-01-10 13:06 ./usr/lib/debug/.build-id/ac/74cdafb4b1fa85cb2e77f53ecae9c3a9fa513f.debug
drwxr-xr-x root/root 0 2016-01-10 13:06 ./usr/lib/debug/.build-id/cb/
-rw-r--r-- root/root 2752684 2016-01-10 13:06 ./usr/lib/debug/.build-id/cb/00bc0730cdc1a5f16514410dca655a76dd6cd3.debug
drwxr-xr-x root/root 0 2016-01-10 13:06 ./usr/share/
drwxr-xr-x root/root 0 2016-01-10 13:06 ./usr/share/doc/
lrwxrwxrwx root/root 0 2016-01-10 13:06 ./usr/share/doc/last-align-dbgsym -> last-align
last-align_712-1_armhf.deb
──────────────────────────
new debian package, version 2.0.
size 544124 bytes: control archive=3484 bytes.
1165 bytes, 24 lines control
6681 bytes, 93 lines md5sums
Package: last-align
Version: 712-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1601
Depends: libc6 (>= 2.4), libgcc1 (>= 1:3.5), libstdc++6 (>= 5.2), parallel
Recommends: python, python-imaging
Section: science
Priority: optional
Homepage: http://last.cbrc.jp/
Description: genome-scale comparison of biological sequences
LAST is software for comparing and aligning sequences, typically DNA or
protein sequences. LAST is similar to BLAST, but it copes better with very
large amounts of sequence data. Here are two things LAST is good at:
.
* Comparing large (e.g. mammalian) genomes.
* Mapping lots of sequence tags onto a genome.
.
The main technical innovation is that LAST finds initial matches based on
their multiplicity, instead of using a fixed size (e.g. BLAST uses 10-mers).
This allows one to map tags to genomes without repeat-masking, without becoming
overwhelmed by repetitive hits. To find these variable-sized matches, it uses
a suffix array (inspired by Vmatch). To achieve high sensitivity, it uses a
discontiguous suffix array, analogous to spaced seeds.
drwxr-xr-x root/root 0 2016-01-10 13:06 ./
drwxr-xr-x root/root 0 2016-01-10 13:05 ./usr/
drwxr-xr-x root/root 0 2016-01-10 13:06 ./usr/bin/
-rwxr-xr-x root/root 475 2016-01-10 13:05 ./usr/bin/fastq-interleave
-rwxr-xr-x root/root 17142 2016-01-10 13:05 ./usr/bin/last-dotplot
-rwxr-xr-x root/root 4703 2016-01-10 13:05 ./usr/bin/last-map-probs
-rwxr-xr-x root/root 5704 2016-01-10 13:06 ./usr/bin/last-merge-batches
-rwxr-xr-x root/root 51204 2016-01-10 13:06 ./usr/bin/last-pair-probs
-rwxr-xr-x root/root 3931 2016-01-10 13:05 ./usr/bin/last-postmask
-rwxr-xr-x root/root 108688 2016-01-10 13:06 ./usr/bin/last-split
-rwxr-xr-x root/root 13627 2016-01-10 13:05 ./usr/bin/last-train
-rwxr-xr-x root/root 726992 2016-01-10 13:06 ./usr/bin/lastal
-rwxr-xr-x root/root 137152 2016-01-10 13:06 ./usr/bin/lastdb
-rwxr-xr-x root/root 25668 2016-01-10 13:05 ./usr/bin/maf-convert
-rwxr-xr-x root/root 8992 2016-01-10 13:05 ./usr/bin/maf-join
-rwxr-xr-x root/root 2027 2016-01-10 13:05 ./usr/bin/maf-sort
-rwxr-xr-x root/root 4762 2016-01-10 13:05 ./usr/bin/maf-swap
-rwxr-xr-x root/root 234 2016-01-10 13:05 ./usr/bin/parallel-fasta
-rwxr-xr-x root/root 295 2016-01-10 13:05 ./usr/bin/parallel-fastq
drwxr-xr-x root/root 0 2016-01-10 13:06 ./usr/share/
drwxr-xr-x root/root 0 2016-01-10 13:05 ./usr/share/doc-base/
-rw-r--r-- root/root 281 2015-12-31 08:28 ./usr/share/doc-base/last-align-manual
-rw-r--r-- root/root 291 2015-12-31 08:28 ./usr/share/doc-base/last-align-scripts
-rw-r--r-- root/root 294 2015-12-31 08:28 ./usr/share/doc-base/last-align-seeds
drwxr-xr-x root/root 0 2016-01-10 13:05 ./usr/share/doc/
drwxr-xr-x root/root 0 2016-01-10 13:06 ./usr/share/doc/last-align/
-rw-r--r-- root/root 12338 2015-12-16 18:25 ./usr/share/doc/last-align/FAQ.html
-rw-r--r-- root/root 2947 2015-12-16 18:25 ./usr/share/doc/last-align/FAQ.txt
-rw-r--r-- root/root 888 2015-12-07 16:10 ./usr/share/doc/last-align/Makefile
-rw-r--r-- root/root 201 2015-12-31 08:28 ./usr/share/doc/last-align/NEWS.Debian.gz
-rw-r--r-- root/root 9832 2015-12-07 16:11 ./usr/share/doc/last-align/bisulfite.html
-rw-r--r-- root/root 2585 2014-02-07 17:26 ./usr/share/doc/last-align/bisulfite.txt
-rw-r--r-- root/root 3981 2015-12-31 08:28 ./usr/share/doc/last-align/changelog.Debian.gz
-rw-r--r-- root/root 27654 2015-12-16 18:25 ./usr/share/doc/last-align/changelog.gz
-rw-r--r-- root/root 1016 2015-12-31 08:28 ./usr/share/doc/last-align/copyright
drwxr-xr-x root/root 0 2016-01-10 13:06 ./usr/share/doc/last-align/examples/
-rw-r--r-- root/root 5504 2013-05-23 07:23 ./usr/share/doc/last-align/examples/chickenMito.fa.gz
-rw-r--r-- root/root 5675 2013-05-23 07:23 ./usr/share/doc/last-align/examples/fuguMito.fa.gz
-rw-r--r-- root/root 5562 2013-05-23 07:23 ./usr/share/doc/last-align/examples/humanMito.fa.gz
-rwxr-xr-x root/root 1484 2014-12-10 12:37 ./usr/share/doc/last-align/examples/last-bisulfite-paired.sh
-rwxr-xr-x root/root 905 2014-04-28 16:08 ./usr/share/doc/last-align/examples/last-bisulfite.sh
-rw-r--r-- root/root 5424 2013-05-23 07:23 ./usr/share/doc/last-align/examples/mouseMito.fa.gz
-rw-r--r-- root/root 50644 2014-07-30 18:08 ./usr/share/doc/last-align/examples/multiMito.maf.gz
-rwxr-xr-x root/root 964 2014-10-07 18:04 ./usr/share/doc/last-align/examples/multiMito.sh
-rw-r--r-- root/root 9249 2015-01-30 18:22 ./usr/share/doc/last-align/examples/myalns.maf.gz
-rw-r--r-- root/root 712 2013-05-23 07:23 ./usr/share/doc/last-align/examples/titv212.mat
-rw-r--r-- root/root 408 2015-09-18 16:28 ./usr/share/doc/last-align/examples/ublast.seed
-rw-r--r-- root/root 539 2013-05-23 07:23 ./usr/share/doc/last-align/examples/vertebrateMito.gc
-rw-r--r-- root/root 260 2015-09-18 16:28 ./usr/share/doc/last-align/last-doc.css
-rw-r--r-- root/root 12011 2015-12-07 16:11 ./usr/share/doc/last-align/last-dotplot.html
-rw-r--r-- root/root 2850 2015-10-27 17:33 ./usr/share/doc/last-align/last-dotplot.txt
-rw-r--r-- root/root 12084 2015-12-07 16:11 ./usr/share/doc/last-align/last-evalues.html
-rw-r--r-- root/root 1870 2015-08-31 16:57 ./usr/share/doc/last-align/last-evalues.txt.gz
-rw-r--r-- root/root 10445 2015-12-07 16:11 ./usr/share/doc/last-align/last-map-probs.html
-rw-r--r-- root/root 2680 2015-09-18 16:28 ./usr/share/doc/last-align/last-map-probs.txt
-rw-r--r-- root/root 18722 2015-12-07 16:11 ./usr/share/doc/last-align/last-matrices.html
-rw-r--r-- root/root 3058 2015-09-18 16:29 ./usr/share/doc/last-align/last-matrices.txt.gz
-rw-r--r-- root/root 14646 2015-12-07 16:11 ./usr/share/doc/last-align/last-pair-probs.html
-rw-r--r-- root/root 2141 2015-09-18 16:28 ./usr/share/doc/last-align/last-pair-probs.txt.gz
-rw-r--r-- root/root 12217 2015-12-07 16:11 ./usr/share/doc/last-align/last-papers.html
-rw-r--r-- root/root 2093 2015-08-03 14:16 ./usr/share/doc/last-align/last-papers.txt.gz
-rw-r--r-- root/root 9819 2015-12-07 16:11 ./usr/share/doc/last-align/last-parallel.html
-rw-r--r-- root/root 2554 2015-12-02 19:06 ./usr/share/doc/last-align/last-parallel.txt
-rw-r--r-- root/root 7807 2015-12-07 16:11 ./usr/share/doc/last-align/last-postmask.html
-rw-r--r-- root/root 998 2014-10-07 18:04 ./usr/share/doc/last-align/last-postmask.txt
-rw-r--r-- root/root 9531 2015-12-07 16:11 ./usr/share/doc/last-align/last-repeats.html
-rw-r--r-- root/root 2373 2015-08-03 14:16 ./usr/share/doc/last-align/last-repeats.txt
-rw-r--r-- root/root 1472 2015-10-27 17:33 ./usr/share/doc/last-align/last-scripts.txt
-rw-r--r-- root/root 11037 2015-12-07 16:11 ./usr/share/doc/last-align/last-seeds.html
-rw-r--r-- root/root 3385 2015-09-18 16:29 ./usr/share/doc/last-align/last-seeds.txt
-rw-r--r-- root/root 21192 2015-12-07 16:11 ./usr/share/doc/last-align/last-split.html
-rw-r--r-- root/root 3553 2015-09-18 16:28 ./usr/share/doc/last-align/last-split.txt.gz
-rw-r--r-- root/root 12104 2015-12-07 16:11 ./usr/share/doc/last-align/last-train.html
-rw-r--r-- root/root 2682 2015-12-02 19:01 ./usr/share/doc/last-align/last-train.txt
-rw-r--r-- root/root 11271 2015-12-07 16:11 ./usr/share/doc/last-align/last-tuning.html
-rw-r--r-- root/root 3693 2015-10-27 17:33 ./usr/share/doc/last-align/last-tuning.txt
-rw-r--r-- root/root 21040 2015-12-07 16:11 ./usr/share/doc/last-align/last-tutorial.html
-rw-r--r-- root/root 3938 2015-12-02 19:01 ./usr/share/doc/last-align/last-tutorial.txt.gz
-rw-r--r-- root/root 10415 2015-12-07 16:11 ./usr/share/doc/last-align/last.html
-rw-r--r-- root/root 2858 2015-08-31 16:57 ./usr/share/doc/last-align/last.txt
-rw-r--r-- root/root 32394 2015-12-07 16:11 ./usr/share/doc/last-align/lastal.html
-rw-r--r-- root/root 7257 2015-12-07 16:10 ./usr/share/doc/last-align/lastal.txt.gz
-rw-r--r-- root/root 15988 2015-12-07 16:11 ./usr/share/doc/last-align/lastdb.html
-rw-r--r-- root/root 2856 2015-09-18 16:28 ./usr/share/doc/last-align/lastdb.txt.gz
-rw-r--r-- root/root 11825 2015-12-07 16:11 ./usr/share/doc/last-align/maf-convert.html
-rw-r--r-- root/root 3594 2015-05-11 16:14 ./usr/share/doc/last-align/maf-convert.txt
-rw-r--r-- root/root 2356 2014-11-17 16:17 ./usr/share/doc/last-align/tag-seeds.txt.gz
drwxr-xr-x root/root 0 2016-01-10 13:06 ./usr/share/man/
drwxr-xr-x root/root 0 2016-01-10 13:06 ./usr/share/man/man1/
-rw-r--r-- root/root 269 2016-01-10 13:06 ./usr/share/man/man1/fastq-interleave.1.gz
-rw-r--r-- root/root 698 2016-01-10 13:06 ./usr/share/man/man1/last-dotplot.1.gz
-rw-r--r-- root/root 429 2016-01-10 13:06 ./usr/share/man/man1/last-map-probs.1.gz
-rw-r--r-- root/root 322 2016-01-10 13:06 ./usr/share/man/man1/last-merge-batches.1.gz
-rw-r--r-- root/root 637 2016-01-10 13:06 ./usr/share/man/man1/last-pair-probs.1.gz
-rw-r--r-- root/root 323 2016-01-10 13:06 ./usr/share/man/man1/last-postmask.1.gz
-rw-r--r-- root/root 694 2016-01-10 13:06 ./usr/share/man/man1/last-split.1.gz
-rw-r--r-- root/root 822 2016-01-10 13:06 ./usr/share/man/man1/last-train.1.gz
-rw-r--r-- root/root 1531 2016-01-10 13:06 ./usr/share/man/man1/lastal.1.gz
-rw-r--r-- root/root 795 2016-01-10 13:06 ./usr/share/man/man1/lastdb.1.gz
-rw-r--r-- root/root 562 2016-01-10 13:06 ./usr/share/man/man1/maf-convert.1.gz
-rw-r--r-- root/root 277 2016-01-10 13:06 ./usr/share/man/man1/maf-join.1.gz
-rw-r--r-- root/root 309 2016-01-10 13:06 ./usr/share/man/man1/maf-sort.1.gz
-rw-r--r-- root/root 333 2016-01-10 13:06 ./usr/share/man/man1/maf-swap.1.gz
┌──────────────────────────────────────────────────────────────────────────────┐
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
┌──────────────────────────────────────────────────────────────────────────────┐
│ Cleanup │
└──────────────────────────────────────────────────────────────────────────────┘
Purging /«BUILDDIR»
Not cleaning session: cloned chroot in use
┌──────────────────────────────────────────────────────────────────────────────┐
│ Summary │
└──────────────────────────────────────────────────────────────────────────────┘
Build Architecture: armhf
Build-Space: 45452
Build-Time: 794
Distribution: stretch-staging
Host Architecture: armhf
Install-Time: 270
Job: last-align_712-1
Machine Architecture: armhf
Package: last-align
Package-Time: 1109
Source-Version: 712-1
Space: 45452
Status: successful
Version: 712-1
────────────────────────────────────────────────────────────────────────────────
Finished at 20160110-1306
Build needed 00:18:29, 45452k disc space