last-align →
1407-1 →
armhf → 2022-08-26 23:41:44
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-02
+==============================================================================+
| last-align 1407-1 (armhf) Fri, 26 Aug 2022 23:33:46 +0000 |
+==============================================================================+
Package: last-align
Version: 1407-1
Source Version: 1407-1
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bookworm-staging-armhf-sbuild-b535cae1-2e7b-4c3b-b08d-42fee3887237' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private bookworm-staging/main Sources [13.2 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf Packages [14.1 MB]
Fetched 27.4 MB in 10s (2731 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
W: http://172.17.4.1/private/dists/bookworm-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'last-align' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/last-align.git
Please use:
git clone https://salsa.debian.org/med-team/last-align.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 1352 kB of source archives.
Get:1 http://172.17.4.1/private bookworm-staging/main last-align 1407-1 (dsc) [2139 B]
Get:2 http://172.17.4.1/private bookworm-staging/main last-align 1407-1 (tar) [1332 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main last-align 1407-1 (diff) [17.4 kB]
Fetched 1352 kB in 0s (7982 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/last-align-vV1LXW/last-align-1407' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/last-align-vV1LXW' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-fAa7iO/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-fAa7iO/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-fAa7iO/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-fAa7iO/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-fAa7iO/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-fAa7iO/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-fAa7iO/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-fAa7iO/apt_archive ./ Packages [433 B]
Fetched 2109 B in 0s (8568 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libpam-cap netbase sensible-utils
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 1 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-fAa7iO/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (68.3 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12802 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), help2man, python3-pil, zlib1g-dev, libsimde-dev, debhelper
Filtered Build-Depends: debhelper-compat (= 13), help2man, python3-pil, zlib1g-dev, libsimde-dev, debhelper
dpkg-deb: building package 'sbuild-build-depends-last-align-dummy' in '/<<BUILDDIR>>/resolver-fAa7iO/apt_archive/sbuild-build-depends-last-align-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-last-align-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-fAa7iO/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-fAa7iO/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-fAa7iO/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-fAa7iO/apt_archive ./ Sources [530 B]
Get:5 copy:/<<BUILDDIR>>/resolver-fAa7iO/apt_archive ./ Packages [610 B]
Fetched 2473 B in 0s (11.2 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install last-align build dependencies (apt-based resolver)
----------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libpam-cap netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils debhelper
dh-autoreconf dh-strip-nondeterminism dmsetup dwz file gettext gettext-base
groff-base help2man intltool-debian libapparmor1 libarchive-zip-perl
libargon2-1 libbrotli1 libbsd0 libcryptsetup12 libdebhelper-perl libdeflate0
libdevmapper1.02.1 libelf1 libexpat1 libfdisk1
libfile-stripnondeterminism-perl libfreetype6 libfribidi0 libglib2.0-0
libgraphite2-3 libharfbuzz0b libicu71 libimagequant0 libip4tc2 libjbig0
libjpeg62-turbo libjson-c5 libkmod2 liblcms2-2 liblerc4
liblocale-gettext-perl libmagic-mgc libmagic1 libmd0 libmpdec3 libopenjp2-7
libpipeline1 libpng16-16 libpython3-stdlib libpython3.10-minimal
libpython3.10-stdlib libraqm0 libsimde-dev libsub-override-perl
libsystemd-shared libtiff5 libtool libuchardet0 libwebp7 libwebpdemux2
libwebpmux3 libxau6 libxcb1 libxdmcp6 libxml2 m4 mailcap man-db media-types
mime-support po-debconf python3 python3-minimal python3-pil python3.10
python3.10-minimal systemd zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc
libasprintf-dev libgettextpo-dev groff liblcms2-utils libtool-doc gfortran
| fortran95-compiler gcj-jdk m4-doc apparmor less www-browser
libmail-box-perl python3-doc python3-tk python3-venv python-pil-doc
python3.10-venv python3.10-doc binfmt-support systemd-container
systemd-homed systemd-userdbd systemd-boot libfido2-1 libtss2-esys-3.0.2-0
libtss2-mu0 libtss2-rc0 policykit-1
Recommended packages:
curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs libltdl-dev libmail-sendmail-perl python3-olefile
default-dbus-system-bus | dbus-system-bus systemd-timesyncd | time-daemon
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils debhelper
dh-autoreconf dh-strip-nondeterminism dmsetup dwz file gettext gettext-base
groff-base help2man intltool-debian libapparmor1 libarchive-zip-perl
libargon2-1 libbrotli1 libbsd0 libcryptsetup12 libdebhelper-perl libdeflate0
libdevmapper1.02.1 libelf1 libexpat1 libfdisk1
libfile-stripnondeterminism-perl libfreetype6 libfribidi0 libglib2.0-0
libgraphite2-3 libharfbuzz0b libicu71 libimagequant0 libip4tc2 libjbig0
libjpeg62-turbo libjson-c5 libkmod2 liblcms2-2 liblerc4
liblocale-gettext-perl libmagic-mgc libmagic1 libmd0 libmpdec3 libopenjp2-7
libpipeline1 libpng16-16 libpython3-stdlib libpython3.10-minimal
libpython3.10-stdlib libraqm0 libsimde-dev libsub-override-perl
libsystemd-shared libtiff5 libtool libuchardet0 libwebp7 libwebpdemux2
libwebpmux3 libxau6 libxcb1 libxdmcp6 libxml2 m4 mailcap man-db media-types
mime-support po-debconf python3 python3-minimal python3-pil python3.10
python3.10-minimal sbuild-build-depends-last-align-dummy systemd zlib1g-dev
0 upgraded, 82 newly installed, 0 to remove and 1 not upgraded.
Need to get 34.9 MB of archives.
After this operation, 131 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-fAa7iO/apt_archive ./ sbuild-build-depends-last-align-dummy 0.invalid.0 [896 B]
Get:2 http://172.17.4.1/private bookworm-staging/main armhf liblocale-gettext-perl armhf 1.07-4+b2 [18.3 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf libargon2-1 armhf 0~20171227-0.3 [19.6 kB]
Get:4 http://172.17.4.1/private bookworm-staging/main armhf dmsetup armhf 2:1.02.185-1 [91.8 kB]
Get:5 http://172.17.4.1/private bookworm-staging/main armhf libdevmapper1.02.1 armhf 2:1.02.185-1 [134 kB]
Get:6 http://172.17.4.1/private bookworm-staging/main armhf libjson-c5 armhf 0.16-1 [40.0 kB]
Get:7 http://172.17.4.1/private bookworm-staging/main armhf libcryptsetup12 armhf 2:2.5.0-2 [225 kB]
Get:8 http://172.17.4.1/private bookworm-staging/main armhf libfdisk1 armhf 2.38.1-1 [237 kB]
Get:9 http://172.17.4.1/private bookworm-staging/main armhf libkmod2 armhf 30+20220630-3 [51.8 kB]
Get:10 http://172.17.4.1/private bookworm-staging/main armhf libapparmor1 armhf 3.0.7-1 [98.9 kB]
Get:11 http://172.17.4.1/private bookworm-staging/main armhf libip4tc2 armhf 1.8.8-1 [32.9 kB]
Get:12 http://172.17.4.1/private bookworm-staging/main armhf libsystemd-shared armhf 251.3-1+rpi1 [1526 kB]
Get:13 http://172.17.4.1/private bookworm-staging/main armhf systemd armhf 251.3-1+rpi1 [2985 kB]
Get:14 http://172.17.4.1/private bookworm-staging/main armhf libpython3.10-minimal armhf 3.10.6-1 [813 kB]
Get:15 http://172.17.4.1/private bookworm-staging/main armhf libexpat1 armhf 2.4.8-1 [84.1 kB]
Get:16 http://172.17.4.1/private bookworm-staging/main armhf python3.10-minimal armhf 3.10.6-1 [1520 kB]
Get:17 http://172.17.4.1/private bookworm-staging/main armhf python3-minimal armhf 3.10.6-1 [38.7 kB]
Get:18 http://172.17.4.1/private bookworm-staging/main armhf media-types all 8.0.0 [33.4 kB]
Get:19 http://172.17.4.1/private bookworm-staging/main armhf mailcap all 3.70+nmu1 [32.0 kB]
Get:20 http://172.17.4.1/private bookworm-staging/main armhf mime-support all 3.66 [10.9 kB]
Get:21 http://172.17.4.1/private bookworm-staging/main armhf libmpdec3 armhf 2.5.1-2+rpi1 [73.5 kB]
Get:22 http://172.17.4.1/private bookworm-staging/main armhf libpython3.10-stdlib armhf 3.10.6-1 [1596 kB]
Get:23 http://172.17.4.1/private bookworm-staging/main armhf python3.10 armhf 3.10.6-1 [545 kB]
Get:24 http://172.17.4.1/private bookworm-staging/main armhf libpython3-stdlib armhf 3.10.6-1 [21.7 kB]
Get:25 http://172.17.4.1/private bookworm-staging/main armhf python3 armhf 3.10.6-1 [38.2 kB]
Get:26 http://172.17.4.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:27 http://172.17.4.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-8 [793 kB]
Get:28 http://172.17.4.1/private bookworm-staging/main armhf bsdextrautils armhf 2.38.1-1 [137 kB]
Get:29 http://172.17.4.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.6-2 [34.2 kB]
Get:30 http://172.17.4.1/private bookworm-staging/main armhf man-db armhf 2.10.2-2 [1364 kB]
Get:31 http://172.17.4.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.41-4 [295 kB]
Get:32 http://172.17.4.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.41-4 [120 kB]
Get:33 http://172.17.4.1/private bookworm-staging/main armhf file armhf 1:5.41-4 [65.8 kB]
Get:34 http://172.17.4.1/private bookworm-staging/main armhf gettext-base armhf 0.21-8 [171 kB]
Get:35 http://172.17.4.1/private bookworm-staging/main armhf m4 armhf 1.4.19-1 [260 kB]
Get:36 http://172.17.4.1/private bookworm-staging/main armhf autoconf all 2.71-2 [343 kB]
Get:37 http://172.17.4.1/private bookworm-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:38 http://172.17.4.1/private bookworm-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get:39 http://172.17.4.1/private bookworm-staging/main armhf autopoint all 0.21-8 [510 kB]
Get:40 http://172.17.4.1/private bookworm-staging/main armhf libdebhelper-perl all 13.9 [195 kB]
Get:41 http://172.17.4.1/private bookworm-staging/main armhf libtool all 2.4.7-4 [526 kB]
Get:42 http://172.17.4.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:43 http://172.17.4.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:44 http://172.17.4.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-3 [10.4 kB]
Get:45 http://172.17.4.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.13.0-1 [26.6 kB]
Get:46 http://172.17.4.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.13.0-1 [15.8 kB]
Get:47 http://172.17.4.1/private bookworm-staging/main armhf libelf1 armhf 0.187-1 [175 kB]
Get:48 http://172.17.4.1/private bookworm-staging/main armhf dwz armhf 0.14-1 [83.0 kB]
Get:49 http://172.17.4.1/private bookworm-staging/main armhf libicu71 armhf 71.1-3 [8855 kB]
Get:50 http://172.17.4.1/private bookworm-staging/main armhf libxml2 armhf 2.9.14+dfsg-1 [591 kB]
Get:51 http://172.17.4.1/private bookworm-staging/main armhf gettext armhf 0.21-8 [1219 kB]
Get:52 http://172.17.4.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:53 http://172.17.4.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:54 http://172.17.4.1/private bookworm-staging/main armhf debhelper all 13.9 [1070 kB]
Get:55 http://172.17.4.1/private bookworm-staging/main armhf help2man armhf 1.49.2 [202 kB]
Get:56 http://172.17.4.1/private bookworm-staging/main armhf libbrotli1 armhf 1.0.9-2+b2 [260 kB]
Get:57 http://172.17.4.1/private bookworm-staging/main armhf libmd0 armhf 1.0.4-2 [28.6 kB]
Get:58 http://172.17.4.1/private bookworm-staging/main armhf libbsd0 armhf 0.11.6-1 [109 kB]
Get:59 http://172.17.4.1/private bookworm-staging/main armhf libdeflate0 armhf 1.12-1 [60.5 kB]
Get:60 http://172.17.4.1/private bookworm-staging/main armhf libpng16-16 armhf 1.6.37-5 [272 kB]
Get:61 http://172.17.4.1/private bookworm-staging/main armhf libfreetype6 armhf 2.12.1+dfsg-3 [352 kB]
Get:62 http://172.17.4.1/private bookworm-staging/main armhf libfribidi0 armhf 1.0.8-2.1 [63.7 kB]
Get:63 http://172.17.4.1/private bookworm-staging/main armhf libglib2.0-0 armhf 2.72.3-1 [1233 kB]
Get:64 http://172.17.4.1/private bookworm-staging/main armhf libgraphite2-3 armhf 1.3.14-1 [70.3 kB]
Get:65 http://172.17.4.1/private bookworm-staging/main armhf libharfbuzz0b armhf 2.7.4-1+b1 [1420 kB]
Get:66 http://172.17.4.1/private bookworm-staging/main armhf libimagequant0 armhf 2.17.0-1 [28.0 kB]
Get:67 http://172.17.4.1/private bookworm-staging/main armhf libjbig0 armhf 2.1-3.1+b2 [27.6 kB]
Get:68 http://172.17.4.1/private bookworm-staging/main armhf libjpeg62-turbo armhf 1:2.1.2-1 [144 kB]
Get:69 http://172.17.4.1/private bookworm-staging/main armhf liblcms2-2 armhf 2.13.1-1 [125 kB]
Get:70 http://172.17.4.1/private bookworm-staging/main armhf liblerc4 armhf 4.0.0+ds-1 [121 kB]
Get:71 http://172.17.4.1/private bookworm-staging/main armhf libopenjp2-7 armhf 2.5.0-1 [165 kB]
Get:72 http://172.17.4.1/private bookworm-staging/main armhf libraqm0 armhf 0.7.0-4 [9388 B]
Get:73 http://172.17.4.1/private bookworm-staging/main armhf libsimde-dev all 0.7.2-6 [259 kB]
Get:74 http://172.17.4.1/private bookworm-staging/main armhf libwebp7 armhf 1.2.2-2 [237 kB]
Get:75 http://172.17.4.1/private bookworm-staging/main armhf libtiff5 armhf 4.4.0-4 [290 kB]
Get:76 http://172.17.4.1/private bookworm-staging/main armhf libwebpdemux2 armhf 1.2.2-2 [97.1 kB]
Get:77 http://172.17.4.1/private bookworm-staging/main armhf libwebpmux3 armhf 1.2.2-2 [105 kB]
Get:78 http://172.17.4.1/private bookworm-staging/main armhf libxau6 armhf 1:1.0.9-1 [19.1 kB]
Get:79 http://172.17.4.1/private bookworm-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:80 http://172.17.4.1/private bookworm-staging/main armhf libxcb1 armhf 1.15-1 [139 kB]
Get:81 http://172.17.4.1/private bookworm-staging/main armhf python3-pil armhf 9.2.0-1 [430 kB]
Get:82 http://172.17.4.1/private bookworm-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-4.1 [183 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Selecting previously unselected package liblocale-gettext-perl.
(Reading database ... 12802 files and directories currently installed.)
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Created symlink /etc/systemd/system/multi-user.target.wants/remote-fs.target -> /lib/systemd/system/remote-fs.target.
Created symlink /etc/systemd/system/sysinit.target.wants/systemd-pstore.service -> /lib/systemd/system/systemd-pstore.service.
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+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.15.0-187-generic armhf (armv8l)
Toolchain package versions: binutils_2.38.90.20220713-2+rpi1 dpkg-dev_1.21.9+rpi1 g++-12_12.1.0-7+rpi1 gcc-12_12.1.0-7+rpi1 libc6-dev_2.33-8+rpi1 libstdc++-12-dev_12.1.0-7+rpi1 libstdc++6_12.1.0-7+rpi1 linux-libc-dev_5.18.14-1+rpi1
Package versions: adduser_3.123 apt_2.5.2 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-8 autotools-dev_20220109.1 base-files_12.2+rpi1 base-passwd_3.6.0 bash_5.1-6.1 binutils_2.38.90.20220713-2+rpi1 binutils-arm-linux-gnueabihf_2.38.90.20220713-2+rpi1 binutils-common_2.38.90.20220713-2+rpi1 bsdextrautils_2.38.1-1 bsdutils_1:2.38.1-1 build-essential_12.9 bzip2_1.0.8-5+b2 coreutils_8.32-4.1 cpp_4:12.1.0-3+rpi1 cpp-12_12.1.0-7+rpi1 dash_0.5.11+git20210903+057cd650a4ed-8 debconf_1.5.79 debhelper_13.9 debianutils_5.7-0.3 dh-autoreconf_20 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.8-1 dirmngr_2.2.35-3 dmsetup_2:1.02.185-1 dpkg_1.21.9+rpi1 dpkg-dev_1.21.9+rpi1 dwz_0.14-1 e2fsprogs_1.46.5-2 fakeroot_1.29-1 file_1:5.41-4 findutils_4.9.0-3 g++_4:12.1.0-3+rpi1 g++-12_12.1.0-7+rpi1 gcc_4:12.1.0-3+rpi1 gcc-12_12.1.0-7+rpi1 gcc-12-base_12.1.0-7+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-8 gettext-base_0.21-8 gnupg_2.2.35-3 gnupg-l10n_2.2.35-3 gnupg-utils_2.2.35-3 gpg_2.2.35-3 gpg-agent_2.2.35-3 gpg-wks-client_2.2.35-3 gpg-wks-server_2.2.35-3 gpgconf_2.2.35-3 gpgsm_2.2.35-3 gpgv_2.2.35-3 grep_3.7-1 groff-base_1.22.4-8 gzip_1.12-1 help2man_1.49.2 hostname_3.23 init-system-helpers_1.64 intltool-debian_0.35.0+20060710.5 iputils-ping_3:20211215-1 krb5-locales_1.20-1 libacl1_2.3.1-1 libapparmor1_3.0.7-1 libapt-pkg6.0_2.5.2 libarchive-zip-perl_1.68-1 libargon2-1_0~20171227-0.3 libasan8_12.1.0-7+rpi1 libassuan0_2.5.5-4 libatomic1_12.1.0-7+rpi1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.7-1 libaudit1_1:3.0.7-1+b1 libbinutils_2.38.90.20220713-2+rpi1 libblkid1_2.38.1-1 libbrotli1_1.0.9-2+b2 libbsd0_0.11.6-1 libbz2-1.0_1.0.8-5+b2 libc-bin_2.33-8+rpi1 libc-dev-bin_2.33-8+rpi1 libc6_2.33-8+rpi1 libc6-dev_2.33-8+rpi1 libcap-ng0_0.8.3-1 libcap2_1:2.44-1 libcap2-bin_1:2.44-1 libcc1-0_12.1.0-7+rpi1 libcom-err2_1.46.5-2 libcrypt-dev_1:4.4.28-2 libcrypt1_1:4.4.28-2 libcryptsetup12_2:2.5.0-2 libctf-nobfd0_2.38.90.20220713-2+rpi1 libctf0_2.38.90.20220713-2+rpi1 libdb5.3_5.3.28+dfsg1-0.10 libdebconfclient0_0.263 libdebhelper-perl_13.9 libdeflate0_1.12-1 libdevmapper1.02.1_2:1.02.185-1 libdpkg-perl_1.21.9+rpi1 libelf1_0.187-1 libexpat1_2.4.8-1 libext2fs2_1.46.5-2 libfakeroot_1.29-1 libfdisk1_2.38.1-1 libffi8_3.4.2-4 libfile-stripnondeterminism-perl_1.13.0-1 libfreetype6_2.12.1+dfsg-3 libfribidi0_1.0.8-2.1 libgcc-12-dev_12.1.0-7+rpi1 libgcc-s1_12.1.0-7+rpi1 libgcrypt20_1.10.1-2+b2 libgdbm-compat4_1.23-1 libgdbm6_1.23-1 libglib2.0-0_2.72.3-1 libgmp10_2:6.2.1+dfsg1-1 libgnutls30_3.7.7-2 libgomp1_12.1.0-7+rpi1 libgpg-error0_1.45-2 libgraphite2-3_1.3.14-1 libgssapi-krb5-2_1.20-1 libharfbuzz0b_2.7.4-1+b1 libhogweed6_3.8.1-2 libicu71_71.1-3 libidn2-0_2.3.3-1 libimagequant0_2.17.0-1 libip4tc2_1.8.8-1 libisl23_0.25-1 libjbig0_2.1-3.1+b2 libjpeg62-turbo_1:2.1.2-1 libjson-c5_0.16-1 libk5crypto3_1.20-1 libkeyutils1_1.6.3-1 libkmod2_30+20220630-3 libkrb5-3_1.20-1 libkrb5support0_1.20-1 libksba8_1.6.0-3 liblcms2-2_2.13.1-1 libldap-2.5-0_2.5.12+dfsg-2 liblerc4_4.0.0+ds-1 liblocale-gettext-perl_1.07-4+b2 liblz4-1_1.9.3-2 liblzma5_5.2.5-2.1 libmagic-mgc_1:5.41-4 libmagic1_1:5.41-4 libmd0_1.0.4-2 libmount1_2.38.1-1 libmpc3_1.2.1-2 libmpdec3_2.5.1-2+rpi1 libmpfr6_4.1.0-3 libncursesw6_6.3+20220423-2 libnettle8_3.8.1-2 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libopenjp2-7_2.5.0-1 libp11-kit0_0.24.1-1 libpam-cap_1:2.44-1 libpam-modules_1.5.2-2 libpam-modules-bin_1.5.2-2 libpam-runtime_1.5.2-2 libpam0g_1.5.2-2 libpcre2-8-0_10.40-1+b2 libpcre3_2:8.39-14 libperl5.34_5.34.0-5 libpipeline1_1.5.6-2 libpng16-16_1.6.37-5 libpython3-stdlib_3.10.6-1 libpython3.10-minimal_3.10.6-1 libpython3.10-stdlib_3.10.6-1 libraqm0_0.7.0-4 libreadline8_8.1.2-1.2 libsasl2-2_2.1.28+dfsg-7 libsasl2-modules-db_2.1.28+dfsg-7 libseccomp2_2.5.4-1+rpi1 libselinux1_3.4-1 libsemanage-common_3.4-1 libsemanage2_3.4-1 libsepol1_3.1-1 libsepol2_3.4-2 libsimde-dev_0.7.2-6 libsmartcols1_2.38.1-1 libsqlite3-0_3.39.2-1 libss2_1.46.5-2 libssl1.1_1.1.1o-1 libssl3_3.0.5-2 libstdc++-12-dev_12.1.0-7+rpi1 libstdc++6_12.1.0-7+rpi1 libsub-override-perl_0.09-3 libsystemd-shared_251.3-1+rpi1 libsystemd0_251.3-1+rpi1 libtasn1-6_4.18.0-4 libtiff5_4.4.0-4 libtinfo6_6.3+20220423-2 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtool_2.4.7-4 libubsan1_12.1.0-7+rpi1 libuchardet0_0.0.7-1 libudev1_251.3-1+rpi1 libunistring2_1.0-1 libuuid1_2.38.1-1 libwebp7_1.2.2-2 libwebpdemux2_1.2.2-2 libwebpmux3_1.2.2-2 libxau6_1:1.0.9-1 libxcb1_1.15-1 libxdmcp6_1:1.1.2-3 libxml2_2.9.14+dfsg-1 libxxhash0_0.8.1-1 libzstd1_1.5.2+dfsg-1 linux-libc-dev_5.18.14-1+rpi1 login_1:4.11.1+dfsg1-2 logsave_1.46.5-2 lsb-base_11.2+rpi1 m4_1.4.19-1 mailcap_3.70+nmu1 make_4.3-4.1 man-db_2.10.2-2 mawk_1.3.4.20200120-3.1 media-types_8.0.0 mime-support_3.66 mount_2.38.1-1 nano_6.4-1 ncurses-base_6.3+20220423-2 ncurses-bin_6.3+20220423-2 netbase_6.3 passwd_1:4.11.1+dfsg1-2 patch_2.7.6-7 perl_5.34.0-5 perl-base_5.34.0-5 perl-modules-5.34_5.34.0-5 pinentry-curses_1.2.0-2 po-debconf_1.0.21+nmu1 python3_3.10.6-1 python3-minimal_3.10.6-1 python3-pil_9.2.0-1 python3.10_3.10.6-1 python3.10-minimal_3.10.6-1 raspbian-archive-keyring_20120528.2 readline-common_8.1.2-1.2 rpcsvc-proto_1.4.2-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-last-align-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sgml-base_1.30 systemd_251.3-1+rpi1 sysvinit-utils_3.04-1 tar_1.34+dfsg-1 tzdata_2022c-1 util-linux_2.38.1-1 util-linux-extra_2.38.1-1 xz-utils_5.2.5-2.1 zlib1g_1:1.2.11.dfsg-4.1 zlib1g-dev_1:1.2.11.dfsg-4.1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.C1F_8eh4/trustedkeys.kbx': General error
gpgv: Signature made Tue Aug 23 15:01:55 2022 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify signature ./last-align_1407-1.dsc
dpkg-source: info: extracting last-align in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking last-align_1407.orig.tar.xz
dpkg-source: info: unpacking last-align_1407-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying helpMakefiles.patch
dpkg-source: info: applying simde
dpkg-source: info: applying fix-shebang.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-b535cae1-2e7b-4c3b-b08d-42fee3887237
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package last-align
dpkg-buildpackage: info: source version 1407-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean
make -j4 clean
make[2]: Entering directory '/<<PKGBUILDDIR>>'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src'
rm -f ../bin/lastdb ../bin/lastal ../bin/last-split ../bin/lastdb5 ../bin/lastal5 ../bin/last-split5 ../bin/last-merge-batches ../bin/last-pair-probs ../bin/lastdb8 ../bin/lastal8 ../bin/last-split8 *.o* */*.o*
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
for i in last-merge-batches last-pair-probs last-split last-split5 lastal lastal5 lastdb lastdb5; \
do \
for j in avx avx2 sse2 sse3 sse4.1 ssse3 sse3 sse2 sse ; \
do \
rm -f bin/$i-$j ; \
done ; \
done
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_clean
debian/rules binary-arch
dh binary-arch
dh_update_autotools_config -a
dh_autoreconf -a
dh_auto_configure -a
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_build
make -j4 "INSTALL=install --strip-program=true"
make[2]: Entering directory '/<<PKGBUILDDIR>>'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src'
g++ -DLAST_POS_BYTES=4 -DALPHABET_CAPACITY=66 -DHAS_CXX_THREADS -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -I. -c -o Alphabet.o Alphabet.cc
../build/seed-inc.sh ../data/*.seed > CyclicSubsetSeedData.hh
g++ -DLAST_POS_BYTES=4 -DALPHABET_CAPACITY=66 -DHAS_CXX_THREADS -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -I. -c -o LambdaCalculator.o LambdaCalculator.cc
../build/mat-inc.sh ../data/*.mat > ScoreMatrixData.hh
g++ -DLAST_POS_BYTES=4 -DALPHABET_CAPACITY=66 -DHAS_CXX_THREADS -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -I. -c -o SubsetMinimizerFinder.o SubsetMinimizerFinder.cc
g++ -DLAST_POS_BYTES=4 -DALPHABET_CAPACITY=66 -DHAS_CXX_THREADS -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -I. -c -o TantanMasker.o TantanMasker.cc
g++ -DLAST_POS_BYTES=4 -DALPHABET_CAPACITY=66 -DHAS_CXX_THREADS -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -I. -c -o dna_words_finder.o dna_words_finder.cc
g++ -DLAST_POS_BYTES=4 -DALPHABET_CAPACITY=66 -DHAS_CXX_THREADS -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -I. -c -o fileMap.o fileMap.cc
g++ -DLAST_POS_BYTES=4 -DALPHABET_CAPACITY=66 -DHAS_CXX_THREADS -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -I. -c -o cbrc_linalg.o cbrc_linalg.cc
g++ -DLAST_POS_BYTES=4 -DALPHABET_CAPACITY=66 -DHAS_CXX_THREADS -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -I. -c -o mcf_substitution_matrix_stats.o mcf_substitution_matrix_stats.cc
g++ -DLAST_POS_BYTES=4 -DALPHABET_CAPACITY=66 -DHAS_CXX_THREADS -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -I. -c -o tantan.o tantan.cc
echo \"`test -e ../.git && git describe --dirty || echo ' (HEAD -> main, tag: 1407) ' | sed -e 's/.*tag: *//' -e 's/[,) ].*//'`\" | cmp -s version.hh - || echo \"`test -e ../.git && git describe --dirty || echo ' (HEAD -> main, tag: 1407) ' | sed -e 's/.*tag: *//' -e 's/[,) ].*//'`\" > version.hh
g++ -DLAST_POS_BYTES=4 -DALPHABET_CAPACITY=66 -DHAS_CXX_THREADS -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -I. -c -o MultiSequence.o MultiSequence.cc
g++ -DLAST_POS_BYTES=4 -DALPHABET_CAPACITY=66 -DHAS_CXX_THREADS -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -I. -c -o MultiSequenceQual.o MultiSequenceQual.cc
In file included from /usr/include/c++/12/vector:70,
from mcf_substitution_matrix_stats.hh:23,
from mcf_substitution_matrix_stats.cc:4:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
523 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:64:
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘void mcf::SubstitutionMatrixStats::calcUnbiased(const char*, const int* const*, unsigned int)’ at mcf_substitution_matrix_stats.cc:127:23:
/usr/include/c++/12/bits/stl_vector.h:1435:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1435 | _M_fill_insert(begin() + __offset, __n, __x);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘void mcf::SubstitutionMatrixStats::calcUnbiased(const char*, const int* const*, unsigned int)’ at mcf_substitution_matrix_stats.cc:128:23:
/usr/include/c++/12/bits/stl_vector.h:1435:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1435 | _M_fill_insert(begin() + __offset, __n, __x);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -DLAST_POS_BYTES=4 -DALPHABET_CAPACITY=66 -DHAS_CXX_THREADS -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -I. -c -o SubsetSuffixArray.o SubsetSuffixArray.cc
g++ -DLAST_POS_BYTES=4 -DALPHABET_CAPACITY=66 -DHAS_CXX_THREADS -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -I. -c -o SubsetSuffixArraySort.o SubsetSuffixArraySort.cc
g++ -DLAST_POS_BYTES=4 -DALPHABET_CAPACITY=66 -DHAS_CXX_THREADS -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -I. -c -o lastdb.o lastdb.cc
g++ -DLAST_POS_BYTES=4 -DALPHABET_CAPACITY=66 -DHAS_CXX_THREADS -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -I. -c -o LastalArguments.o LastalArguments.cc
g++ -DLAST_POS_BYTES=4 -DALPHABET_CAPACITY=66 -DHAS_CXX_THREADS -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -I. -c -o GappedXdropAligner.o GappedXdropAligner.cc
g++ -DLAST_POS_BYTES=4 -DALPHABET_CAPACITY=66 -DHAS_CXX_THREADS -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -I. -c -o GappedXdropAlignerDna.o GappedXdropAlignerDna.cc
g++ -DLAST_POS_BYTES=4 -DALPHABET_CAPACITY=66 -DHAS_CXX_THREADS -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -I. -c -o GappedXdropAlignerPssm.o GappedXdropAlignerPssm.cc
g++ -DLAST_POS_BYTES=4 -DALPHABET_CAPACITY=66 -DHAS_CXX_THREADS -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -I. -c -o GappedXdropAligner2qual.o GappedXdropAligner2qual.cc
g++ -DLAST_POS_BYTES=4 -DALPHABET_CAPACITY=66 -DHAS_CXX_THREADS -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -I. -c -o GappedXdropAligner3frame.o GappedXdropAligner3frame.cc
g++ -DLAST_POS_BYTES=4 -DALPHABET_CAPACITY=66 -DHAS_CXX_THREADS -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -I. -c -o GappedXdropAlignerFrame.o GappedXdropAlignerFrame.cc
g++ -DLAST_POS_BYTES=4 -DALPHABET_CAPACITY=66 -DHAS_CXX_THREADS -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -I. -c -o mcf_aligment_path_adder.o mcf_aligment_path_adder.cc
g++ -DLAST_POS_BYTES=4 -DALPHABET_CAPACITY=66 -DHAS_CXX_THREADS -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -I. -c -o mcf_frameshift_xdrop_aligner.o mcf_frameshift_xdrop_aligner.cc
g++ -DLAST_POS_BYTES=4 -DALPHABET_CAPACITY=66 -DHAS_CXX_THREADS -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -I. -c -o mcf_gap_costs.o mcf_gap_costs.cc
../build/gc-inc.sh ../data/gc.prt > GeneticCodeData.hh
g++ -DLAST_POS_BYTES=4 -DALPHABET_CAPACITY=66 -DHAS_CXX_THREADS -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -I. -c -o GreedyXdropAligner.o GreedyXdropAligner.cc
g++ -DLAST_POS_BYTES=4 -DALPHABET_CAPACITY=66 -DHAS_CXX_THREADS -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -I. -c -o LastEvaluer.o LastEvaluer.cc
g++ -DLAST_POS_BYTES=4 -DALPHABET_CAPACITY=66 -DHAS_CXX_THREADS -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -I. -c -o OneQualityScoreMatrix.o OneQualityScoreMatrix.cc
g++ -DLAST_POS_BYTES=4 -DALPHABET_CAPACITY=66 -DHAS_CXX_THREADS -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -I. -c -o QualityPssmMaker.o QualityPssmMaker.cc
g++ -DLAST_POS_BYTES=4 -DALPHABET_CAPACITY=66 -DHAS_CXX_THREADS -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -I. -c -o TwoQualityScoreMatrix.o TwoQualityScoreMatrix.cc
g++ -DLAST_POS_BYTES=4 -DALPHABET_CAPACITY=66 -DHAS_CXX_THREADS -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -I. -c -o gaplessXdrop.o gaplessXdrop.cc
g++ -DLAST_POS_BYTES=4 -DALPHABET_CAPACITY=66 -DHAS_CXX_THREADS -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -I. -c -o gaplessPssmXdrop.o gaplessPssmXdrop.cc
g++ -DLAST_POS_BYTES=4 -DALPHABET_CAPACITY=66 -DHAS_CXX_THREADS -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -I. -c -o gaplessTwoQualityXdrop.o gaplessTwoQualityXdrop.cc
g++ -DLAST_POS_BYTES=4 -DALPHABET_CAPACITY=66 -DHAS_CXX_THREADS -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -I. -c -o split/cbrc_unsplit_alignment.o split/cbrc_unsplit_alignment.cc
g++ -DLAST_POS_BYTES=4 -DALPHABET_CAPACITY=66 -DHAS_CXX_THREADS -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -I. -c -o split/last_split_options.o split/last_split_options.cc
In file included from /usr/include/c++/12/vector:70,
from mcf_gap_costs.hh:20,
from mcf_frameshift_xdrop_aligner.hh:21,
from LastEvaluer.hh:21,
from LastEvaluer.cc:3:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:64:
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘std::back_insert_iterator<_Container>& std::back_insert_iterator<_Container>::operator=(const typename _Container::value_type&) [with _Container = std::vector<double>]’ at /usr/include/c++/12/bits/stl_iterator.h:735:22,
inlined from ‘_OutputIterator std::partial_sum(_InputIterator, _InputIterator, _OutputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _OutputIterator = back_insert_iterator<vector<double> >]’ at /usr/include/c++/12/bits/stl_numeric.h:270:17,
inlined from ‘void std::discrete_distribution<_IntType>::param_type::_M_initialize() [with _IntType = int]’ at /usr/include/c++/12/bits/random.tcc:2679:23:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘std::back_insert_iterator<_Container>& std::back_insert_iterator<_Container>::operator=(const typename _Container::value_type&) [with _Container = std::vector<double>]’ at /usr/include/c++/12/bits/stl_iterator.h:735:22,
inlined from ‘_OutputIterator std::partial_sum(_InputIterator, _InputIterator, _OutputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _OutputIterator = back_insert_iterator<vector<double> >]’ at /usr/include/c++/12/bits/stl_numeric.h:274:16,
inlined from ‘void std::discrete_distribution<_IntType>::param_type::_M_initialize() [with _IntType = int]’ at /usr/include/c++/12/bits/random.tcc:2679:23:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -c -o alp/sls_alignment_evaluer.o alp/sls_alignment_evaluer.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -c -o alp/sls_pvalues.o alp/sls_pvalues.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -c -o alp/sls_alp_sim.o alp/sls_alp_sim.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -c -o alp/sls_alp_regression.o alp/sls_alp_regression.cpp
In file included from /usr/include/c++/12/vector:70,
from alp/sls_pvalues.hpp:41,
from alp/sls_alignment_evaluer.hpp:39,
from alp/sls_alignment_evaluer.cpp:37:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘void Sls::AlignmentEvaluer::initParameters(const Sls::AlignmentEvaluerParametersWithErrors&)’ at alp/sls_alignment_evaluer.cpp:945:34:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘void Sls::AlignmentEvaluer::initParameters(const Sls::AlignmentEvaluerParametersWithErrors&)’ at alp/sls_alignment_evaluer.cpp:946:29:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘void Sls::AlignmentEvaluer::initParameters(const Sls::AlignmentEvaluerParametersWithErrors&)’ at alp/sls_alignment_evaluer.cpp:947:29:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘void Sls::AlignmentEvaluer::initParameters(const Sls::AlignmentEvaluerParametersWithErrors&)’ at alp/sls_alignment_evaluer.cpp:949:33:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘void Sls::AlignmentEvaluer::initParameters(const Sls::AlignmentEvaluerParametersWithErrors&)’ at alp/sls_alignment_evaluer.cpp:951:34:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘void Sls::AlignmentEvaluer::initParameters(const Sls::AlignmentEvaluerParametersWithErrors&)’ at alp/sls_alignment_evaluer.cpp:952:34:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘void Sls::AlignmentEvaluer::initParameters(const Sls::AlignmentEvaluerParametersWithErrors&)’ at alp/sls_alignment_evaluer.cpp:954:30:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘void Sls::AlignmentEvaluer::initParameters(const Sls::AlignmentEvaluerParametersWithErrors&)’ at alp/sls_alignment_evaluer.cpp:955:30:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘void Sls::AlignmentEvaluer::initParameters(const Sls::AlignmentEvaluerParametersWithErrors&)’ at alp/sls_alignment_evaluer.cpp:957:30:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘void Sls::AlignmentEvaluer::initParameters(const Sls::AlignmentEvaluerParametersWithErrors&)’ at alp/sls_alignment_evaluer.cpp:958:30:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘void Sls::AlignmentEvaluer::initParameters(const Sls::AlignmentEvaluerParametersWithErrors&)’ at alp/sls_alignment_evaluer.cpp:960:33:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘void Sls::AlignmentEvaluer::initParameters(const Sls::AlignmentEvaluerParametersWithErrors&)’ at alp/sls_alignment_evaluer.cpp:961:33:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘void Sls::AlignmentEvaluer::initParameters(const Sls::AlignmentEvaluerParametersWithErrors&)’ at alp/sls_alignment_evaluer.cpp:963:31:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/bits/stl_algo.h:60,
from /usr/include/c++/12/algorithm:61,
from alp/sls_alp_regression.hpp:46,
from alp/sls_alp_regression.cpp:36:
/usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<double, long int>*, vector<pair<double, long int> > >; _Distance = int; _Tp = pair<double, long int>; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/12/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, long int>*, std::vector<std::pair<double, long int> > >’ changed in GCC 7.1
223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/12/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1802 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1908 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<double, long int>*, vector<pair<double, long int> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, long int>*, std::vector<std::pair<double, long int> > >’ changed in GCC 7.1
1908 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, long int>*, std::vector<std::pair<double, long int> > >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, long int>*, std::vector<std::pair<double, long int> > >’ changed in GCC 7.1
1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -c -o alp/sls_alp_data.o alp/sls_alp_data.cpp
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<double, long int>*, vector<pair<double, long int> > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, long int>*, std::vector<std::pair<double, long int> > >’ changed in GCC 7.1
1802 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, long int>*, std::vector<std::pair<double, long int> > >’ changed in GCC 7.1
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -c -o alp/sls_alp.o alp/sls_alp.cpp
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<double*, vector<double> >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from ‘static double Sls::alp_reg::median(long int, double*)’ at alp/sls_alp_regression.cpp:643:6:
/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1937 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1938 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1939 | __comp);
| ~~~~~~~
In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31,
inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<double*, vector<double> >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from ‘static double Sls::alp_reg::median(long int, double*)’ at alp/sls_alp_regression.cpp:643:6:
/usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1854 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<double, long int>*, vector<pair<double, long int> > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<pair<double, long int>*, vector<pair<double, long int> > >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from ‘static double Sls::alp_reg::robust_sum(double*, long int, long int, bool*&)’ at alp/sls_alp_regression.cpp:695:7:
/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, long int>*, std::vector<std::pair<double, long int> > >’ changed in GCC 7.1
1937 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1938 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1939 | __comp);
| ~~~~~~~
In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<double, long int>*, vector<pair<double, long int> > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<double, long int>*, vector<pair<double, long int> > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31,
inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<pair<double, long int>*, vector<pair<double, long int> > >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from ‘static double Sls::alp_reg::robust_sum(double*, long int, long int, bool*&)’ at alp/sls_alp_regression.cpp:695:7:
/usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, long int>*, std::vector<std::pair<double, long int> > >’ changed in GCC 7.1
1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, long int>*, std::vector<std::pair<double, long int> > >’ changed in GCC 7.1
1854 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<double*, vector<double> >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from ‘static void Sls::alp_reg::find_tetta_general(double (*)(double, void*), void*, double, double, long int, double, std::vector<double>&)’ at alp/sls_alp_regression.cpp:109:6:
/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1937 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1938 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1939 | __comp);
| ~~~~~~~
In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31,
inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<double*, vector<double> >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from ‘static void Sls::alp_reg::find_tetta_general(double (*)(double, void*), void*, double, double, long int, double, std::vector<double>&)’ at alp/sls_alp_regression.cpp:109:6:
/usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1854 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -c -o alp/sls_basic.o alp/sls_basic.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -c -o alp/njn_localmaxstatmatrix.o alp/njn_localmaxstatmatrix.cpp
In file included from /usr/include/c++/12/bits/stl_algo.h:60,
from /usr/include/c++/12/algorithm:61,
from alp/sls_alp_regression.hpp:46,
from alp/sls_alp_data.hpp:62,
from alp/sls_alp_data.cpp:36:
/usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/12/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1802 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1908 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<double*, vector<double> >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from ‘Sls::importance_sampling::importance_sampling(Sls::alp_data*, long int, long int, double, long int, long int**, double*, double*)’ at alp/sls_alp_data.cpp:1269:8:
/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1937 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1938 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1939 | __comp);
| ~~~~~~~
In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31,
inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<double*, vector<double> >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from ‘Sls::importance_sampling::importance_sampling(Sls::alp_data*, long int, long int, double, long int, long int**, double*, double*)’ at alp/sls_alp_data.cpp:1269:8:
/usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1854 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -c -o alp/njn_localmaxstat.o alp/njn_localmaxstat.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -c -o alp/njn_localmaxstatutil.o alp/njn_localmaxstatutil.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -c -o alp/njn_dynprogprob.o alp/njn_dynprogprob.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -c -o alp/njn_dynprogprobproto.o alp/njn_dynprogprobproto.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -c -o alp/njn_dynprogproblim.o alp/njn_dynprogproblim.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -c -o alp/njn_ioutil.o alp/njn_ioutil.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -c -o alp/njn_random.o alp/njn_random.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -c -o alp/sls_falp_alignment_evaluer.o alp/sls_falp_alignment_evaluer.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -c -o alp/sls_fsa1_pvalues.o alp/sls_fsa1_pvalues.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -c -o alp/sls_fsa1_utils.o alp/sls_fsa1_utils.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -c -o alp/sls_fsa1.o alp/sls_fsa1.cpp
In file included from /usr/include/c++/12/vector:70,
from alp/sls_fsa1_pvalues.hpp:41,
from alp/sls_falp_alignment_evaluer.hpp:40,
from alp/sls_falp_alignment_evaluer.cpp:37:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘void Sls::FrameshiftAlignmentEvaluer::initParameters(const Sls::AlignmentEvaluerParametersWithErrors&)’ at alp/sls_falp_alignment_evaluer.cpp:900:34:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘void Sls::FrameshiftAlignmentEvaluer::initParameters(const Sls::AlignmentEvaluerParametersWithErrors&)’ at alp/sls_falp_alignment_evaluer.cpp:901:29:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘void Sls::FrameshiftAlignmentEvaluer::initParameters(const Sls::AlignmentEvaluerParametersWithErrors&)’ at alp/sls_falp_alignment_evaluer.cpp:902:29:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘void Sls::FrameshiftAlignmentEvaluer::initParameters(const Sls::AlignmentEvaluerParametersWithErrors&)’ at alp/sls_falp_alignment_evaluer.cpp:904:33:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘void Sls::FrameshiftAlignmentEvaluer::initParameters(const Sls::AlignmentEvaluerParametersWithErrors&)’ at alp/sls_falp_alignment_evaluer.cpp:906:34:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘void Sls::FrameshiftAlignmentEvaluer::initParameters(const Sls::AlignmentEvaluerParametersWithErrors&)’ at alp/sls_falp_alignment_evaluer.cpp:907:34:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘void Sls::FrameshiftAlignmentEvaluer::initParameters(const Sls::AlignmentEvaluerParametersWithErrors&)’ at alp/sls_falp_alignment_evaluer.cpp:909:30:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘void Sls::FrameshiftAlignmentEvaluer::initParameters(const Sls::AlignmentEvaluerParametersWithErrors&)’ at alp/sls_falp_alignment_evaluer.cpp:910:30:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘void Sls::FrameshiftAlignmentEvaluer::initParameters(const Sls::AlignmentEvaluerParametersWithErrors&)’ at alp/sls_falp_alignment_evaluer.cpp:912:30:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘void Sls::FrameshiftAlignmentEvaluer::initParameters(const Sls::AlignmentEvaluerParametersWithErrors&)’ at alp/sls_falp_alignment_evaluer.cpp:913:30:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘void Sls::FrameshiftAlignmentEvaluer::initParameters(const Sls::AlignmentEvaluerParametersWithErrors&)’ at alp/sls_falp_alignment_evaluer.cpp:915:33:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘void Sls::FrameshiftAlignmentEvaluer::initParameters(const Sls::AlignmentEvaluerParametersWithErrors&)’ at alp/sls_falp_alignment_evaluer.cpp:916:33:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘void Sls::FrameshiftAlignmentEvaluer::initParameters(const Sls::AlignmentEvaluerParametersWithErrors&)’ at alp/sls_falp_alignment_evaluer.cpp:918:31:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -c -o alp/sls_fsa1_parameters.o alp/sls_fsa1_parameters.cpp
g++ -DLAST_POS_BYTES=4 -DALPHABET_CAPACITY=66 -DHAS_CXX_THREADS -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -I. -c -o Alignment.o Alignment.cc
In file included from /usr/include/c++/12/bits/stl_algo.h:60,
from /usr/include/c++/12/algorithm:61,
from alp/sls_alp_regression.hpp:46,
from alp/sls_fsa1.hpp:39,
from alp/sls_fsa1.cpp:36:
/usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/12/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1802 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1908 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -DLAST_POS_BYTES=4 -DALPHABET_CAPACITY=66 -DHAS_CXX_THREADS -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -I. -c -o AlignmentPot.o AlignmentPot.cc
In file included from /usr/include/c++/12/vector:70,
from alp/sls_fsa1_utils.hpp:40,
from alp/sls_fsa1_utils.cpp:36:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
523 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:64:
In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘static void Sls::FSA_utils::multiply_matrix_and_vector(const std::vector<std::vector<double> >&, const std::vector<double>&, std::vector<double>&)’ at alp/sls_fsa1_utils.cpp:1805:13:
/usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1032 | _M_fill_insert(end(), __new_size - size(), __x);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘static void Sls::FSA_utils::multiply_matrices(const std::vector<std::vector<double> >&, const std::vector<std::vector<double> >&, std::vector<std::vector<double> >&)’ at alp/sls_fsa1_utils.cpp:1758:17:
/usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1032 | _M_fill_insert(end(), __new_size - size(), __x);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -DLAST_POS_BYTES=4 -DALPHABET_CAPACITY=66 -DHAS_CXX_THREADS -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -I. -c -o AlignmentWrite.o AlignmentWrite.cc
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<double*, vector<double> >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from ‘static void Sls::test::calculate_ungapped_lambda(long int, double*, double*, long int**, double&)’ at alp/sls_fsa1.cpp:10745:6:
/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1937 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1938 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1939 | __comp);
| ~~~~~~~
In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31,
inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<double*, vector<double> >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from ‘static void Sls::test::calculate_ungapped_lambda(long int, double*, double*, long int**, double&)’ at alp/sls_fsa1.cpp:10745:6:
/usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1854 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/algorithm:61,
from Centroid.hh:15,
from Alignment.hh:8,
from AlignmentPot.hh:8,
from AlignmentPot.cc:3:
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<cbrc::Alignment*, vector<cbrc::Alignment> >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const cbrc::Alignment&, const cbrc::Alignment&)>]’:
/usr/include/c++/12/bits/stl_algo.h:1782:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::Alignment*, std::vector<cbrc::Alignment> >’ changed in GCC 7.1
1782 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<cbrc::Alignment*, vector<cbrc::Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const cbrc::Alignment&, const cbrc::Alignment&)>]’:
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::Alignment*, std::vector<cbrc::Alignment> >’ changed in GCC 7.1
1802 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::Alignment*, std::vector<cbrc::Alignment> >’ changed in GCC 7.1
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<double*, vector<double> >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from ‘static void Sls::test::calculate_ungapped_lambda_general(double (*)(double, void*), void*, double&)’ at alp/sls_fsa1.cpp:10819:6:
/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1937 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1938 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1939 | __comp);
| ~~~~~~~
In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31,
inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<double*, vector<double> >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from ‘static void Sls::test::calculate_ungapped_lambda_general(double (*)(double, void*), void*, double&)’ at alp/sls_fsa1.cpp:10819:6:
/usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1854 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/bits/stl_algo.h:60:
/usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<cbrc::Alignment*, vector<cbrc::Alignment> >; _Distance = int; _Tp = cbrc::Alignment; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const cbrc::Alignment&, const cbrc::Alignment&)>]’:
/usr/include/c++/12/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::Alignment*, std::vector<cbrc::Alignment> >’ changed in GCC 7.1
223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<cbrc::Alignment*, vector<cbrc::Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const cbrc::Alignment&, const cbrc::Alignment&)>]’:
/usr/include/c++/12/bits/stl_heap.h:339:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::Alignment*, std::vector<cbrc::Alignment> >’ changed in GCC 7.1
339 | __make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
| ^~~~~~~~~~~
/usr/include/c++/12/bits/stl_heap.h:339:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::Alignment*, std::vector<cbrc::Alignment> >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<cbrc::Alignment*, vector<cbrc::Alignment> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const cbrc::Alignment&, const cbrc::Alignment&)>]’:
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::Alignment*, std::vector<cbrc::Alignment> >’ changed in GCC 7.1
1908 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::Alignment*, std::vector<cbrc::Alignment> >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::Alignment*, std::vector<cbrc::Alignment> >’ changed in GCC 7.1
1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<cbrc::Alignment*, vector<cbrc::Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const cbrc::Alignment&, const cbrc::Alignment&)>]’,
inlined from ‘void std::__partial_sort(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<cbrc::Alignment*, vector<cbrc::Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const cbrc::Alignment&, const cbrc::Alignment&)>]’ at /usr/include/c++/12/bits/stl_algo.h:1900:25,
inlined from ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<cbrc::Alignment*, vector<cbrc::Alignment> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const cbrc::Alignment&, const cbrc::Alignment&)>]’ at /usr/include/c++/12/bits/stl_algo.h:1916:27:
/usr/include/c++/12/bits/stl_algo.h:1629:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::Alignment*, std::vector<cbrc::Alignment> >’ changed in GCC 7.1
1629 | std::__make_heap(__first, __middle, __comp);
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<cbrc::Alignment*, vector<cbrc::Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const cbrc::Alignment&, const cbrc::Alignment&)>]’,
inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<cbrc::Alignment*, vector<cbrc::Alignment> >; _Compare = bool (*)(const cbrc::Alignment&, const cbrc::Alignment&)]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18,
inlined from ‘void cbrc::AlignmentPot::eraseSuboptimal()’ at AlignmentPot.cc:10:12:
/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::Alignment*, std::vector<cbrc::Alignment> >’ changed in GCC 7.1
1937 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1938 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1939 | __comp);
| ~~~~~~~
In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<cbrc::Alignment*, vector<cbrc::Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const cbrc::Alignment&, const cbrc::Alignment&)>]’,
inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<cbrc::Alignment*, vector<cbrc::Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const cbrc::Alignment&, const cbrc::Alignment&)>]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31,
inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<cbrc::Alignment*, vector<cbrc::Alignment> >; _Compare = bool (*)(const cbrc::Alignment&, const cbrc::Alignment&)]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18,
inlined from ‘void cbrc::AlignmentPot::eraseSuboptimal()’ at AlignmentPot.cc:10:12:
/usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::Alignment*, std::vector<cbrc::Alignment> >’ changed in GCC 7.1
1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::Alignment*, std::vector<cbrc::Alignment> >’ changed in GCC 7.1
1854 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<cbrc::Alignment*, vector<cbrc::Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const cbrc::Alignment&, const cbrc::Alignment&)>]’,
inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<cbrc::Alignment*, vector<cbrc::Alignment> >; _Compare = bool (*)(const cbrc::Alignment&, const cbrc::Alignment&)]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18,
inlined from ‘void cbrc::AlignmentPot::eraseSuboptimal()’ at AlignmentPot.cc:18:12:
/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::Alignment*, std::vector<cbrc::Alignment> >’ changed in GCC 7.1
1937 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1938 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1939 | __comp);
| ~~~~~~~
In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<cbrc::Alignment*, vector<cbrc::Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const cbrc::Alignment&, const cbrc::Alignment&)>]’,
inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<cbrc::Alignment*, vector<cbrc::Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const cbrc::Alignment&, const cbrc::Alignment&)>]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31,
inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<cbrc::Alignment*, vector<cbrc::Alignment> >; _Compare = bool (*)(const cbrc::Alignment&, const cbrc::Alignment&)]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18,
inlined from ‘void cbrc::AlignmentPot::eraseSuboptimal()’ at AlignmentPot.cc:18:12:
/usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::Alignment*, std::vector<cbrc::Alignment> >’ changed in GCC 7.1
1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::Alignment*, std::vector<cbrc::Alignment> >’ changed in GCC 7.1
1854 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
g++ -DLAST_POS_BYTES=4 -DALPHABET_CAPACITY=66 -DHAS_CXX_THREADS -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -I. -c -o Centroid.o Centroid.cc
In file included from /usr/include/c++/12/vector:70,
from alp/sls_alp_regression.hpp:43:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
g++ -DLAST_POS_BYTES=4 -DALPHABET_CAPACITY=66 -DHAS_CXX_THREADS -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -I. -c -o DiagonalTable.o DiagonalTable.cc
g++ -DLAST_POS_BYTES=4 -DALPHABET_CAPACITY=66 -DHAS_CXX_THREADS -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -I. -c -o SegmentPair.o SegmentPair.cc
g++ -DLAST_POS_BYTES=4 -DALPHABET_CAPACITY=66 -DHAS_CXX_THREADS -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -I. -c -o SegmentPairPot.o SegmentPairPot.cc
g++ -DLAST_POS_BYTES=4 -DALPHABET_CAPACITY=66 -DHAS_CXX_THREADS -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -I. -c -o SubsetSuffixArraySearch.o SubsetSuffixArraySearch.cc
g++ -DLAST_POS_BYTES=4 -DALPHABET_CAPACITY=66 -DHAS_CXX_THREADS -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -I. -c -o lastal.o lastal.cc
g++ -DLAST_POS_BYTES=4 -DALPHABET_CAPACITY=66 -DHAS_CXX_THREADS -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -I. -c -o split/cbrc_split_aligner.o split/cbrc_split_aligner.cc
g++ -DLAST_POS_BYTES=4 -DALPHABET_CAPACITY=66 -DHAS_CXX_THREADS -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -I. -c -o split/mcf_last_splitter.o split/mcf_last_splitter.cc
In file included from /usr/include/c++/12/vector:64:
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘void Sls::IS1_general_simulation::calculate_weight_W1_for_fixed_lengths_using_recursions(long int, long int, double&, bool, std::vector<std::vector<double> >*, std::vector<std::vector<double> >*)’ at alp/sls_fsa1.cpp:2237:23:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘void Sls::IS1_general_simulation::calculate_weight_W1_for_fixed_lengths_using_recursions(long int, long int, double&, bool, std::vector<std::vector<double> >*, std::vector<std::vector<double> >*)’ at alp/sls_fsa1.cpp:2483:23:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
g++ -DLAST_POS_BYTES=4 -DALPHABET_CAPACITY=66 -DHAS_CXX_THREADS -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -I. -c -o split/last-split-main.o split/last-split-main.cc
In file included from /usr/include/c++/12/algorithm:61,
from Mmap.hh:12,
from VectorOrMmap.hh:8,
from MultiSequence.hh:13,
from last.hh:8,
from lastal.cc:5:
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<cbrc::AlignmentText*, vector<cbrc::AlignmentText> >; _Compare = __gnu_cxx::__ops::_Val_less_iter]’:
/usr/include/c++/12/bits/stl_algo.h:1782:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::AlignmentText*, std::vector<cbrc::AlignmentText> >’ changed in GCC 7.1
1782 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<cbrc::AlignmentText*, vector<cbrc::AlignmentText> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::AlignmentText*, std::vector<cbrc::AlignmentText> >’ changed in GCC 7.1
1802 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::AlignmentText*, std::vector<cbrc::AlignmentText> >’ changed in GCC 7.1
In file included from /usr/include/c++/12/bits/stl_algo.h:60:
/usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<cbrc::AlignmentText*, vector<cbrc::AlignmentText> >; _Distance = int; _Tp = cbrc::AlignmentText; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/12/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::AlignmentText*, std::vector<cbrc::AlignmentText> >’ changed in GCC 7.1
223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:70,
from split/cbrc_unsplit_alignment.hh:13,
from split/cbrc_split_aligner.hh:7,
from split/cbrc_split_aligner.cc:4:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:64:
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘std::vector<double> cbrc::SplitAligner::marginalProbs(unsigned int, unsigned int, unsigned int, unsigned int) const’ at split/cbrc_split_aligner.cc:750:23:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘std::vector<double> cbrc::SplitAligner::marginalProbs(unsigned int, unsigned int, unsigned int, unsigned int) const’ at split/cbrc_split_aligner.cc:754:23:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<cbrc::AlignmentText*, vector<cbrc::AlignmentText> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::AlignmentText*, std::vector<cbrc::AlignmentText> >’ changed in GCC 7.1
1908 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::AlignmentText*, std::vector<cbrc::AlignmentText> >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::AlignmentText*, std::vector<cbrc::AlignmentText> >’ changed in GCC 7.1
1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘static void Sls::test::collect_and_output_E_distr_upto_fixed_ALP(long int, std::string, Sls::two_dim_layer_alignment_algorithm<long int>&, Sls::IS1_general_simulation&, long int, double, long int, long int, Sls::FALP_set_of_parameters&, bool, bool, Sls::IS1_general*, double*, long int*)’ at alp/sls_fsa1.cpp:7214:30:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘static void Sls::test::collect_and_output_E_distr_upto_fixed_ALP(long int, std::string, Sls::two_dim_layer_alignment_algorithm<long int>&, Sls::IS1_general_simulation&, long int, double, long int, long int, Sls::FALP_set_of_parameters&, bool, bool, Sls::IS1_general*, double*, long int*)’ at alp/sls_fsa1.cpp:7284:25:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘static void Sls::test::collect_and_output_E_distr_upto_fixed_ALP(long int, std::string, Sls::two_dim_layer_alignment_algorithm<long int>&, Sls::IS1_general_simulation&, long int, double, long int, long int, Sls::FALP_set_of_parameters&, bool, bool, Sls::IS1_general*, double*, long int*)’ at alp/sls_fsa1.cpp:7429:27:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘static void Sls::test::collect_and_output_E_distr_upto_fixed_ALP(long int, std::string, Sls::two_dim_layer_alignment_algorithm<long int>&, Sls::IS1_general_simulation&, long int, double, long int, long int, Sls::FALP_set_of_parameters&, bool, bool, Sls::IS1_general*, double*, long int*)’ at alp/sls_fsa1.cpp:7566:26:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘static void Sls::test::collect_and_output_E_distr_upto_fixed_ALP(long int, std::string, Sls::two_dim_layer_alignment_algorithm<long int>&, Sls::IS1_general_simulation&, long int, double, long int, long int, Sls::FALP_set_of_parameters&, bool, bool, Sls::IS1_general*, double*, long int*)’ at alp/sls_fsa1.cpp:7609:26:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘static void Sls::test::collect_and_output_E_distr_upto_fixed_ALP(long int, std::string, Sls::two_dim_layer_alignment_algorithm<long int>&, Sls::IS1_general_simulation&, long int, double, long int, long int, Sls::FALP_set_of_parameters&, bool, bool, Sls::IS1_general*, double*, long int*)’ at alp/sls_fsa1.cpp:7651:29:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘static void Sls::test::collect_and_output_E_distr_upto_fixed_ALP(long int, std::string, Sls::two_dim_layer_alignment_algorithm<long int>&, Sls::IS1_general_simulation&, long int, double, long int, long int, Sls::FALP_set_of_parameters&, bool, bool, Sls::IS1_general*, double*, long int*)’ at alp/sls_fsa1.cpp:7693:30:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘static void Sls::test::collect_and_output_E_distr_upto_fixed_ALP(long int, std::string, Sls::two_dim_layer_alignment_algorithm<long int>&, Sls::IS1_general_simulation&, long int, double, long int, long int, Sls::FALP_set_of_parameters&, bool, bool, Sls::IS1_general*, double*, long int*)’ at alp/sls_fsa1.cpp:7731:30:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
g++ -DLAST_POS_BYTES=4 -DALPHABET_CAPACITY=66 -DHAS_CXX_THREADS -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -I. -c -o split/last-split.o split/last-split.cc
In file included from /usr/include/c++/12/vector:70,
from CyclicSubsetSeed.hh:41,
from last.hh:7:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const cbrc::Alignment&}; _Tp = cbrc::Alignment; _Alloc = std::allocator<cbrc::Alignment>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<cbrc::Alignment>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:64:
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = cbrc::Alignment; _Alloc = std::allocator<cbrc::Alignment>]’,
inlined from ‘void cbrc::AlignmentPot::add(const cbrc::Alignment&)’ at AlignmentPot.hh:18:53,
inlined from ‘void alignGapped(LastAligner&, cbrc::AlignmentPot&, cbrc::SegmentPairPot&, const SeqData&, const SubstitutionMatrices&, Phase::Enum)’ at lastal.cc:809:47:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::Alignment*, std::vector<cbrc::Alignment> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘static void Sls::test::collect_and_output_E_distr_upto_fixed_ALP_with_saving_of_states(bool, double&, long int, std::string, Sls::two_dim_layer_alignment_algorithm<long int>&, Sls::IS1_general_simulation&, long int, double, long int, long int, Sls::FALP_set_of_parameters&, bool&, bool, bool, double, bool&, long int&, double, bool, Sls::mult_states_type*, Sls::mult_states_type*&, long int&, bool, long int, Sls::IS1_general*, double*, long int*, bool)’ at alp/sls_fsa1.cpp:9334:30:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘static void Sls::test::collect_and_output_E_distr_upto_fixed_ALP_with_saving_of_states(bool, double&, long int, std::string, Sls::two_dim_layer_alignment_algorithm<long int>&, Sls::IS1_general_simulation&, long int, double, long int, long int, Sls::FALP_set_of_parameters&, bool&, bool, bool, double, bool&, long int&, double, bool, Sls::mult_states_type*, Sls::mult_states_type*&, long int&, bool, long int, Sls::IS1_general*, double*, long int*, bool)’ at alp/sls_fsa1.cpp:9408:25:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const cbrc::AlignmentText&}; _Tp = cbrc::AlignmentText; _Alloc = std::allocator<cbrc::AlignmentText>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<cbrc::AlignmentText>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘static void Sls::test::collect_and_output_E_distr_upto_fixed_ALP_with_saving_of_states(bool, double&, long int, std::string, Sls::two_dim_layer_alignment_algorithm<long int>&, Sls::IS1_general_simulation&, long int, double, long int, long int, Sls::FALP_set_of_parameters&, bool&, bool, bool, double, bool&, long int&, double, bool, Sls::mult_states_type*, Sls::mult_states_type*&, long int&, bool, long int, Sls::IS1_general*, double*, long int*, bool)’ at alp/sls_fsa1.cpp:9562:27:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘static void Sls::test::collect_and_output_E_distr_upto_fixed_ALP_with_saving_of_states(bool, double&, long int, std::string, Sls::two_dim_layer_alignment_algorithm<long int>&, Sls::IS1_general_simulation&, long int, double, long int, long int, Sls::FALP_set_of_parameters&, bool&, bool, bool, double, bool&, long int&, double, bool, Sls::mult_states_type*, Sls::mult_states_type*&, long int&, bool, long int, Sls::IS1_general*, double*, long int*, bool)’ at alp/sls_fsa1.cpp:9742:26:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘static void Sls::test::collect_and_output_E_distr_upto_fixed_ALP_with_saving_of_states(bool, double&, long int, std::string, Sls::two_dim_layer_alignment_algorithm<long int>&, Sls::IS1_general_simulation&, long int, double, long int, long int, Sls::FALP_set_of_parameters&, bool&, bool, bool, double, bool&, long int&, double, bool, Sls::mult_states_type*, Sls::mult_states_type*&, long int&, bool, long int, Sls::IS1_general*, double*, long int*, bool)’ at alp/sls_fsa1.cpp:9785:26:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘static void Sls::test::collect_and_output_E_distr_upto_fixed_ALP_with_saving_of_states(bool, double&, long int, std::string, Sls::two_dim_layer_alignment_algorithm<long int>&, Sls::IS1_general_simulation&, long int, double, long int, long int, Sls::FALP_set_of_parameters&, bool&, bool, bool, double, bool&, long int&, double, bool, Sls::mult_states_type*, Sls::mult_states_type*&, long int&, bool, long int, Sls::IS1_general*, double*, long int*, bool)’ at alp/sls_fsa1.cpp:9827:29:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘static void Sls::test::collect_and_output_E_distr_upto_fixed_ALP_with_saving_of_states(bool, double&, long int, std::string, Sls::two_dim_layer_alignment_algorithm<long int>&, Sls::IS1_general_simulation&, long int, double, long int, long int, Sls::FALP_set_of_parameters&, bool&, bool, bool, double, bool&, long int&, double, bool, Sls::mult_states_type*, Sls::mult_states_type*&, long int&, bool, long int, Sls::IS1_general*, double*, long int*, bool)’ at alp/sls_fsa1.cpp:9869:30:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘static void Sls::test::collect_and_output_E_distr_upto_fixed_ALP_with_saving_of_states(bool, double&, long int, std::string, Sls::two_dim_layer_alignment_algorithm<long int>&, Sls::IS1_general_simulation&, long int, double, long int, long int, Sls::FALP_set_of_parameters&, bool&, bool, bool, double, bool&, long int&, double, bool, Sls::mult_states_type*, Sls::mult_states_type*&, long int&, bool, long int, Sls::IS1_general*, double*, long int*, bool)’ at alp/sls_fsa1.cpp:9907:30:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = cbrc::AlignmentText; _Alloc = std::allocator<cbrc::AlignmentText>]’,
inlined from ‘void writeAlignment(LastAligner&, const cbrc::MultiSequence&, const SeqData&, const cbrc::Alignment&, const cbrc::AlignmentExtras&)’ at lastal.cc:593:31:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::AlignmentText*, std::vector<cbrc::AlignmentText> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<cbrc::Alignment*, vector<cbrc::Alignment> >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const cbrc::Alignment&, const cbrc::Alignment&)>]’:
/usr/include/c++/12/bits/stl_algo.h:1782:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::Alignment*, std::vector<cbrc::Alignment> >’ changed in GCC 7.1
1782 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<cbrc::Alignment*, vector<cbrc::Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const cbrc::Alignment&, const cbrc::Alignment&)>]’:
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::Alignment*, std::vector<cbrc::Alignment> >’ changed in GCC 7.1
1802 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::Alignment*, std::vector<cbrc::Alignment> >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<cbrc::AlignmentText*, vector<cbrc::AlignmentText> >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const cbrc::AlignmentText&, const cbrc::AlignmentText&)>]’:
/usr/include/c++/12/bits/stl_algo.h:1782:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::AlignmentText*, std::vector<cbrc::AlignmentText> >’ changed in GCC 7.1
1782 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<cbrc::AlignmentText*, vector<cbrc::AlignmentText> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const cbrc::AlignmentText&, const cbrc::AlignmentText&)>]’:
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::AlignmentText*, std::vector<cbrc::AlignmentText> >’ changed in GCC 7.1
1802 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::AlignmentText*, std::vector<cbrc::AlignmentText> >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<cbrc::Alignment*, vector<cbrc::Alignment> >; _Distance = int; _Tp = cbrc::Alignment; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const cbrc::Alignment&, const cbrc::Alignment&)>]’:
/usr/include/c++/12/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::Alignment*, std::vector<cbrc::Alignment> >’ changed in GCC 7.1
223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<cbrc::Alignment*, vector<cbrc::Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const cbrc::Alignment&, const cbrc::Alignment&)>]’:
/usr/include/c++/12/bits/stl_heap.h:339:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::Alignment*, std::vector<cbrc::Alignment> >’ changed in GCC 7.1
339 | __make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
| ^~~~~~~~~~~
/usr/include/c++/12/bits/stl_heap.h:339:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::Alignment*, std::vector<cbrc::Alignment> >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<cbrc::Alignment*, vector<cbrc::Alignment> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const cbrc::Alignment&, const cbrc::Alignment&)>]’:
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::Alignment*, std::vector<cbrc::Alignment> >’ changed in GCC 7.1
1908 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::Alignment*, std::vector<cbrc::Alignment> >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::Alignment*, std::vector<cbrc::Alignment> >’ changed in GCC 7.1
1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<cbrc::Alignment*, vector<cbrc::Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const cbrc::Alignment&, const cbrc::Alignment&)>]’,
inlined from ‘void std::__partial_sort(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<cbrc::Alignment*, vector<cbrc::Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const cbrc::Alignment&, const cbrc::Alignment&)>]’ at /usr/include/c++/12/bits/stl_algo.h:1900:25,
inlined from ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<cbrc::Alignment*, vector<cbrc::Alignment> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const cbrc::Alignment&, const cbrc::Alignment&)>]’ at /usr/include/c++/12/bits/stl_algo.h:1916:27:
/usr/include/c++/12/bits/stl_algo.h:1629:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::Alignment*, std::vector<cbrc::Alignment> >’ changed in GCC 7.1
1629 | std::__make_heap(__first, __middle, __comp);
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<cbrc::Alignment*, vector<cbrc::Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const cbrc::Alignment&, const cbrc::Alignment&)>]’,
inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<cbrc::Alignment*, vector<cbrc::Alignment> >; _Compare = bool (*)(const cbrc::Alignment&, const cbrc::Alignment&)]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18,
inlined from ‘void cbrc::AlignmentPot::sort()’ at AlignmentPot.hh:28:26,
inlined from ‘void scan(LastAligner&, const cbrc::MultiSequence&, const SeqData&, const SubstitutionMatrices&)’ at lastal.cc:1055:47:
/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::Alignment*, std::vector<cbrc::Alignment> >’ changed in GCC 7.1
1937 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1938 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1939 | __comp);
| ~~~~~~~
In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<cbrc::Alignment*, vector<cbrc::Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const cbrc::Alignment&, const cbrc::Alignment&)>]’,
inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<cbrc::Alignment*, vector<cbrc::Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const cbrc::Alignment&, const cbrc::Alignment&)>]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31,
inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<cbrc::Alignment*, vector<cbrc::Alignment> >; _Compare = bool (*)(const cbrc::Alignment&, const cbrc::Alignment&)]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18,
inlined from ‘void cbrc::AlignmentPot::sort()’ at AlignmentPot.hh:28:26,
inlined from ‘void scan(LastAligner&, const cbrc::MultiSequence&, const SeqData&, const SubstitutionMatrices&)’ at lastal.cc:1055:47:
/usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::Alignment*, std::vector<cbrc::Alignment> >’ changed in GCC 7.1
1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::Alignment*, std::vector<cbrc::Alignment> >’ changed in GCC 7.1
1854 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<cbrc::AlignmentText*, vector<cbrc::AlignmentText> >; _Distance = int; _Tp = cbrc::AlignmentText; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const cbrc::AlignmentText&, const cbrc::AlignmentText&)>]’:
/usr/include/c++/12/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::AlignmentText*, std::vector<cbrc::AlignmentText> >’ changed in GCC 7.1
223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<cbrc::AlignmentText*, vector<cbrc::AlignmentText> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const cbrc::AlignmentText&, const cbrc::AlignmentText&)>]’:
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::AlignmentText*, std::vector<cbrc::AlignmentText> >’ changed in GCC 7.1
1908 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::AlignmentText*, std::vector<cbrc::AlignmentText> >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::AlignmentText*, std::vector<cbrc::AlignmentText> >’ changed in GCC 7.1
1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -DLAST_POS_BYTES=5 -DALPHABET_CAPACITY=66 -DHAS_CXX_THREADS -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -I. -c -o MultiSequence.o5 MultiSequence.cc
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<cbrc::AlignmentText*, vector<cbrc::AlignmentText> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const cbrc::AlignmentText&, const cbrc::AlignmentText&)>]’,
inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<cbrc::AlignmentText*, vector<cbrc::AlignmentText> >; _Compare = bool (*)(const cbrc::AlignmentText&, const cbrc::AlignmentText&)]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18,
inlined from ‘void cullFinalAlignments(std::vector<cbrc::AlignmentText>&, size_t, size_t)’ at lastal.cc:913:7:
/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::AlignmentText*, std::vector<cbrc::AlignmentText> >’ changed in GCC 7.1
1937 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1938 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1939 | __comp);
| ~~~~~~~
In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<cbrc::AlignmentText*, vector<cbrc::AlignmentText> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const cbrc::AlignmentText&, const cbrc::AlignmentText&)>]’,
inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<cbrc::AlignmentText*, vector<cbrc::AlignmentText> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const cbrc::AlignmentText&, const cbrc::AlignmentText&)>]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31,
inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<cbrc::AlignmentText*, vector<cbrc::AlignmentText> >; _Compare = bool (*)(const cbrc::AlignmentText&, const cbrc::AlignmentText&)]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18,
inlined from ‘void cullFinalAlignments(std::vector<cbrc::AlignmentText>&, size_t, size_t)’ at lastal.cc:913:7:
/usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::AlignmentText*, std::vector<cbrc::AlignmentText> >’ changed in GCC 7.1
1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::AlignmentText*, std::vector<cbrc::AlignmentText> >’ changed in GCC 7.1
1854 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<cbrc::AlignmentText*, vector<cbrc::AlignmentText> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<cbrc::AlignmentText*, vector<cbrc::AlignmentText> >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from ‘void alignOneQuery(LastAligner&, cbrc::MultiSequence&, size_t, size_t, size_t, bool)’ at lastal.cc:1204:11,
inlined from ‘void runOneThread(unsigned int)’ at lastal.cc:1302:20,
inlined from ‘void runOneThreadSafely(unsigned int)’ at lastal.cc:1330:17:
/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::AlignmentText*, std::vector<cbrc::AlignmentText> >’ changed in GCC 7.1
1937 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1938 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1939 | __comp);
| ~~~~~~~
In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<cbrc::AlignmentText*, vector<cbrc::AlignmentText> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<cbrc::AlignmentText*, vector<cbrc::AlignmentText> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31,
inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<cbrc::AlignmentText*, vector<cbrc::AlignmentText> >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from ‘void alignOneQuery(LastAligner&, cbrc::MultiSequence&, size_t, size_t, size_t, bool)’ at lastal.cc:1204:11,
inlined from ‘void runOneThread(unsigned int)’ at lastal.cc:1302:20,
inlined from ‘void runOneThreadSafely(unsigned int)’ at lastal.cc:1330:17:
/usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::AlignmentText*, std::vector<cbrc::AlignmentText> >’ changed in GCC 7.1
1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::AlignmentText*, std::vector<cbrc::AlignmentText> >’ changed in GCC 7.1
1854 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘static void Sls::test::collect_and_output_E_distr_upto_fixed_ALP_with_saving_of_states(bool, double&, long int, std::string, Sls::two_dim_layer_alignment_algorithm<long int>&, Sls::IS1_general_simulation&, long int, double, long int, long int, Sls::FALP_set_of_parameters&, bool&, bool, bool, double, bool&, long int&, double, bool, Sls::mult_states_type*, Sls::mult_states_type*&, long int&, bool, long int, Sls::IS1_general*, double*, long int*, bool)’ at alp/sls_fsa1.cpp:9334:30:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘static void Sls::test::collect_and_output_E_distr_upto_fixed_ALP_with_saving_of_states(bool, double&, long int, std::string, Sls::two_dim_layer_alignment_algorithm<long int>&, Sls::IS1_general_simulation&, long int, double, long int, long int, Sls::FALP_set_of_parameters&, bool&, bool, bool, double, bool&, long int&, double, bool, Sls::mult_states_type*, Sls::mult_states_type*&, long int&, bool, long int, Sls::IS1_general*, double*, long int*, bool)’ at alp/sls_fsa1.cpp:9408:25:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘static void Sls::test::collect_and_output_E_distr_upto_fixed_ALP_with_saving_of_states(bool, double&, long int, std::string, Sls::two_dim_layer_alignment_algorithm<long int>&, Sls::IS1_general_simulation&, long int, double, long int, long int, Sls::FALP_set_of_parameters&, bool&, bool, bool, double, bool&, long int&, double, bool, Sls::mult_states_type*, Sls::mult_states_type*&, long int&, bool, long int, Sls::IS1_general*, double*, long int*, bool)’ at alp/sls_fsa1.cpp:9562:27:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘static void Sls::test::collect_and_output_E_distr_upto_fixed_ALP_with_saving_of_states(bool, double&, long int, std::string, Sls::two_dim_layer_alignment_algorithm<long int>&, Sls::IS1_general_simulation&, long int, double, long int, long int, Sls::FALP_set_of_parameters&, bool&, bool, bool, double, bool&, long int&, double, bool, Sls::mult_states_type*, Sls::mult_states_type*&, long int&, bool, long int, Sls::IS1_general*, double*, long int*, bool)’ at alp/sls_fsa1.cpp:9742:26:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘static void Sls::test::collect_and_output_E_distr_upto_fixed_ALP_with_saving_of_states(bool, double&, long int, std::string, Sls::two_dim_layer_alignment_algorithm<long int>&, Sls::IS1_general_simulation&, long int, double, long int, long int, Sls::FALP_set_of_parameters&, bool&, bool, bool, double, bool&, long int&, double, bool, Sls::mult_states_type*, Sls::mult_states_type*&, long int&, bool, long int, Sls::IS1_general*, double*, long int*, bool)’ at alp/sls_fsa1.cpp:9785:26:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘static void Sls::test::collect_and_output_E_distr_upto_fixed_ALP_with_saving_of_states(bool, double&, long int, std::string, Sls::two_dim_layer_alignment_algorithm<long int>&, Sls::IS1_general_simulation&, long int, double, long int, long int, Sls::FALP_set_of_parameters&, bool&, bool, bool, double, bool&, long int&, double, bool, Sls::mult_states_type*, Sls::mult_states_type*&, long int&, bool, long int, Sls::IS1_general*, double*, long int*, bool)’ at alp/sls_fsa1.cpp:9827:29:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘static void Sls::test::collect_and_output_E_distr_upto_fixed_ALP_with_saving_of_states(bool, double&, long int, std::string, Sls::two_dim_layer_alignment_algorithm<long int>&, Sls::IS1_general_simulation&, long int, double, long int, long int, Sls::FALP_set_of_parameters&, bool&, bool, bool, double, bool&, long int&, double, bool, Sls::mult_states_type*, Sls::mult_states_type*&, long int&, bool, long int, Sls::IS1_general*, double*, long int*, bool)’ at alp/sls_fsa1.cpp:9869:30:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘static void Sls::test::collect_and_output_E_distr_upto_fixed_ALP_with_saving_of_states(bool, double&, long int, std::string, Sls::two_dim_layer_alignment_algorithm<long int>&, Sls::IS1_general_simulation&, long int, double, long int, long int, Sls::FALP_set_of_parameters&, bool&, bool, bool, double, bool&, long int&, double, bool, Sls::mult_states_type*, Sls::mult_states_type*&, long int&, bool, long int, Sls::IS1_general*, double*, long int*, bool)’ at alp/sls_fsa1.cpp:9907:30:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<cbrc::AlignmentText*, vector<cbrc::AlignmentText> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<cbrc::AlignmentText*, vector<cbrc::AlignmentText> >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from ‘void alignOneQuery(LastAligner&, cbrc::MultiSequence&, size_t, size_t, size_t, bool)’ at lastal.cc:1204:11,
inlined from ‘size_t alignSomeQueries(size_t, unsigned int)’ at lastal.cc:1223:18:
/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::AlignmentText*, std::vector<cbrc::AlignmentText> >’ changed in GCC 7.1
1937 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1938 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1939 | __comp);
| ~~~~~~~
In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<cbrc::AlignmentText*, vector<cbrc::AlignmentText> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<cbrc::AlignmentText*, vector<cbrc::AlignmentText> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31,
inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<cbrc::AlignmentText*, vector<cbrc::AlignmentText> >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from ‘void alignOneQuery(LastAligner&, cbrc::MultiSequence&, size_t, size_t, size_t, bool)’ at lastal.cc:1204:11,
inlined from ‘size_t alignSomeQueries(size_t, unsigned int)’ at lastal.cc:1223:18:
/usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::AlignmentText*, std::vector<cbrc::AlignmentText> >’ changed in GCC 7.1
1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::AlignmentText*, std::vector<cbrc::AlignmentText> >’ changed in GCC 7.1
1854 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<cbrc::AlignmentText*, vector<cbrc::AlignmentText> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<cbrc::AlignmentText*, vector<cbrc::AlignmentText> >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from ‘size_t alignSomeQueries(size_t, unsigned int)’ at lastal.cc:1229:9:
/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::AlignmentText*, std::vector<cbrc::AlignmentText> >’ changed in GCC 7.1
1937 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1938 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1939 | __comp);
| ~~~~~~~
In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<cbrc::AlignmentText*, vector<cbrc::AlignmentText> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<cbrc::AlignmentText*, vector<cbrc::AlignmentText> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31,
inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<cbrc::AlignmentText*, vector<cbrc::AlignmentText> >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from ‘size_t alignSomeQueries(size_t, unsigned int)’ at lastal.cc:1229:9:
/usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::AlignmentText*, std::vector<cbrc::AlignmentText> >’ changed in GCC 7.1
1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::AlignmentText*, std::vector<cbrc::AlignmentText> >’ changed in GCC 7.1
1854 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
g++ -DLAST_POS_BYTES=5 -DALPHABET_CAPACITY=66 -DHAS_CXX_THREADS -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -I. -c -o MultiSequenceQual.o5 MultiSequenceQual.cc
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘void Sls::test::FSA_IS(bool, long int, long int, const long int*, const long int* const*, const double*, const double*, long int, long int, long int, long int, long int, long int, std::string, std::string, std::string, std::string, double, double, bool, double, double, long int, long int, long int, bool, bool, double, Sls::FALP_set_of_parameters&, Sls::par_test1_type*)’ at alp/sls_fsa1.cpp:5458:39:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
g++ -DLAST_POS_BYTES=5 -DALPHABET_CAPACITY=66 -DHAS_CXX_THREADS -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -I. -c -o SubsetSuffixArray.o5 SubsetSuffixArray.cc
g++ -DLAST_POS_BYTES=5 -DALPHABET_CAPACITY=66 -DHAS_CXX_THREADS -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -I. -c -o SubsetSuffixArraySort.o5 SubsetSuffixArraySort.cc
g++ -DLAST_POS_BYTES=5 -DALPHABET_CAPACITY=66 -DHAS_CXX_THREADS -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -I. -c -o lastdb.o5 lastdb.cc
g++ -DLAST_POS_BYTES=5 -DALPHABET_CAPACITY=66 -DHAS_CXX_THREADS -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -I. -c -o Alignment.o5 Alignment.cc
g++ -DLAST_POS_BYTES=5 -DALPHABET_CAPACITY=66 -DHAS_CXX_THREADS -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -I. -c -o AlignmentPot.o5 AlignmentPot.cc
g++ -DLAST_POS_BYTES=5 -DALPHABET_CAPACITY=66 -DHAS_CXX_THREADS -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -I. -c -o AlignmentWrite.o5 AlignmentWrite.cc
In file included from lastdb.cc:6:
last.hh:21:36: warning: right shift count >= width of type [-Wshift-count-overflow]
21 | const size_t posLimit = size_t(-1) >> ((sizeof(size_t) - posSize) * CHAR_BIT);
| ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/algorithm:61,
from Centroid.hh:15,
from Alignment.hh:8,
from AlignmentPot.hh:8,
from AlignmentPot.cc:3:
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<cbrc::Alignment*, vector<cbrc::Alignment> >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const cbrc::Alignment&, const cbrc::Alignment&)>]’:
/usr/include/c++/12/bits/stl_algo.h:1782:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::Alignment*, std::vector<cbrc::Alignment> >’ changed in GCC 7.1
1782 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<cbrc::Alignment*, vector<cbrc::Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const cbrc::Alignment&, const cbrc::Alignment&)>]’:
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::Alignment*, std::vector<cbrc::Alignment> >’ changed in GCC 7.1
1802 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::Alignment*, std::vector<cbrc::Alignment> >’ changed in GCC 7.1
In file included from /usr/include/c++/12/bits/stl_algo.h:60:
/usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<cbrc::Alignment*, vector<cbrc::Alignment> >; _Distance = int; _Tp = cbrc::Alignment; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const cbrc::Alignment&, const cbrc::Alignment&)>]’:
/usr/include/c++/12/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::Alignment*, std::vector<cbrc::Alignment> >’ changed in GCC 7.1
223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<cbrc::Alignment*, vector<cbrc::Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const cbrc::Alignment&, const cbrc::Alignment&)>]’:
/usr/include/c++/12/bits/stl_heap.h:339:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::Alignment*, std::vector<cbrc::Alignment> >’ changed in GCC 7.1
339 | __make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
| ^~~~~~~~~~~
/usr/include/c++/12/bits/stl_heap.h:339:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::Alignment*, std::vector<cbrc::Alignment> >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<cbrc::Alignment*, vector<cbrc::Alignment> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const cbrc::Alignment&, const cbrc::Alignment&)>]’:
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::Alignment*, std::vector<cbrc::Alignment> >’ changed in GCC 7.1
1908 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::Alignment*, std::vector<cbrc::Alignment> >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::Alignment*, std::vector<cbrc::Alignment> >’ changed in GCC 7.1
1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<cbrc::Alignment*, vector<cbrc::Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const cbrc::Alignment&, const cbrc::Alignment&)>]’,
inlined from ‘void std::__partial_sort(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<cbrc::Alignment*, vector<cbrc::Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const cbrc::Alignment&, const cbrc::Alignment&)>]’ at /usr/include/c++/12/bits/stl_algo.h:1900:25,
inlined from ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<cbrc::Alignment*, vector<cbrc::Alignment> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const cbrc::Alignment&, const cbrc::Alignment&)>]’ at /usr/include/c++/12/bits/stl_algo.h:1916:27:
/usr/include/c++/12/bits/stl_algo.h:1629:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::Alignment*, std::vector<cbrc::Alignment> >’ changed in GCC 7.1
1629 | std::__make_heap(__first, __middle, __comp);
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<cbrc::Alignment*, vector<cbrc::Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const cbrc::Alignment&, const cbrc::Alignment&)>]’,
inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<cbrc::Alignment*, vector<cbrc::Alignment> >; _Compare = bool (*)(const cbrc::Alignment&, const cbrc::Alignment&)]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18,
inlined from ‘void cbrc::AlignmentPot::eraseSuboptimal()’ at AlignmentPot.cc:10:12:
/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::Alignment*, std::vector<cbrc::Alignment> >’ changed in GCC 7.1
1937 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1938 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1939 | __comp);
| ~~~~~~~
In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<cbrc::Alignment*, vector<cbrc::Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const cbrc::Alignment&, const cbrc::Alignment&)>]’,
inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<cbrc::Alignment*, vector<cbrc::Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const cbrc::Alignment&, const cbrc::Alignment&)>]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31,
inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<cbrc::Alignment*, vector<cbrc::Alignment> >; _Compare = bool (*)(const cbrc::Alignment&, const cbrc::Alignment&)]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18,
inlined from ‘void cbrc::AlignmentPot::eraseSuboptimal()’ at AlignmentPot.cc:10:12:
/usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::Alignment*, std::vector<cbrc::Alignment> >’ changed in GCC 7.1
1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::Alignment*, std::vector<cbrc::Alignment> >’ changed in GCC 7.1
1854 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<cbrc::Alignment*, vector<cbrc::Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const cbrc::Alignment&, const cbrc::Alignment&)>]’,
inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<cbrc::Alignment*, vector<cbrc::Alignment> >; _Compare = bool (*)(const cbrc::Alignment&, const cbrc::Alignment&)]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18,
inlined from ‘void cbrc::AlignmentPot::eraseSuboptimal()’ at AlignmentPot.cc:18:12:
/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::Alignment*, std::vector<cbrc::Alignment> >’ changed in GCC 7.1
1937 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1938 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1939 | __comp);
| ~~~~~~~
In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<cbrc::Alignment*, vector<cbrc::Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const cbrc::Alignment&, const cbrc::Alignment&)>]’,
inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<cbrc::Alignment*, vector<cbrc::Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const cbrc::Alignment&, const cbrc::Alignment&)>]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31,
inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<cbrc::Alignment*, vector<cbrc::Alignment> >; _Compare = bool (*)(const cbrc::Alignment&, const cbrc::Alignment&)]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18,
inlined from ‘void cbrc::AlignmentPot::eraseSuboptimal()’ at AlignmentPot.cc:18:12:
/usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::Alignment*, std::vector<cbrc::Alignment> >’ changed in GCC 7.1
1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::Alignment*, std::vector<cbrc::Alignment> >’ changed in GCC 7.1
1854 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
g++ -DLAST_POS_BYTES=5 -DALPHABET_CAPACITY=66 -DHAS_CXX_THREADS -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -I. -c -o Centroid.o5 Centroid.cc
g++ -DLAST_POS_BYTES=5 -DALPHABET_CAPACITY=66 -DHAS_CXX_THREADS -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -I. -c -o DiagonalTable.o5 DiagonalTable.cc
g++ -DLAST_POS_BYTES=5 -DALPHABET_CAPACITY=66 -DHAS_CXX_THREADS -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -I. -c -o SegmentPair.o5 SegmentPair.cc
g++ -DLAST_POS_BYTES=5 -DALPHABET_CAPACITY=66 -DHAS_CXX_THREADS -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -I. -c -o SegmentPairPot.o5 SegmentPairPot.cc
g++ -DLAST_POS_BYTES=5 -DALPHABET_CAPACITY=66 -DHAS_CXX_THREADS -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -I. -c -o SubsetSuffixArraySearch.o5 SubsetSuffixArraySearch.cc
g++ -DLAST_POS_BYTES=5 -DALPHABET_CAPACITY=66 -DHAS_CXX_THREADS -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -I. -c -o lastal.o5 lastal.cc
g++ -DLAST_POS_BYTES=5 -DALPHABET_CAPACITY=66 -DHAS_CXX_THREADS -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -I. -c -o split/cbrc_split_aligner.o5 split/cbrc_split_aligner.cc
In file included from lastal.cc:5:
last.hh:21:36: warning: right shift count >= width of type [-Wshift-count-overflow]
21 | const size_t posLimit = size_t(-1) >> ((sizeof(size_t) - posSize) * CHAR_BIT);
| ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -DLAST_POS_BYTES=5 -DALPHABET_CAPACITY=66 -DHAS_CXX_THREADS -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -I. -c -o split/mcf_last_splitter.o5 split/mcf_last_splitter.cc
g++ -DLAST_POS_BYTES=5 -DALPHABET_CAPACITY=66 -DHAS_CXX_THREADS -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -I. -c -o split/last-split.o5 split/last-split.cc
cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o last-merge-batches.o last-merge-batches.c
In file included from /usr/include/c++/12/vector:70,
from split/cbrc_unsplit_alignment.hh:13,
from split/cbrc_split_aligner.hh:7,
from split/cbrc_split_aligner.cc:4:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:64:
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘std::vector<double> cbrc::SplitAligner::marginalProbs(unsigned int, unsigned int, unsigned int, unsigned int) const’ at split/cbrc_split_aligner.cc:750:23:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘std::vector<double> cbrc::SplitAligner::marginalProbs(unsigned int, unsigned int, unsigned int, unsigned int) const’ at split/cbrc_split_aligner.cc:754:23:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
g++ -DLAST_POS_BYTES=4 -DALPHABET_CAPACITY=66 -DHAS_CXX_THREADS -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -I. -c -o last-pair-probs.o last-pair-probs.cc
In file included from /usr/include/c++/12/algorithm:61,
from Mmap.hh:12,
from VectorOrMmap.hh:8,
from MultiSequence.hh:13,
from last.hh:8:
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<cbrc::AlignmentText*, vector<cbrc::AlignmentText> >; _Compare = __gnu_cxx::__ops::_Val_less_iter]’:
/usr/include/c++/12/bits/stl_algo.h:1782:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::AlignmentText*, std::vector<cbrc::AlignmentText> >’ changed in GCC 7.1
1782 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<cbrc::AlignmentText*, vector<cbrc::AlignmentText> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::AlignmentText*, std::vector<cbrc::AlignmentText> >’ changed in GCC 7.1
1802 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::AlignmentText*, std::vector<cbrc::AlignmentText> >’ changed in GCC 7.1
In file included from /usr/include/c++/12/bits/stl_algo.h:60:
/usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<cbrc::AlignmentText*, vector<cbrc::AlignmentText> >; _Distance = int; _Tp = cbrc::AlignmentText; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/12/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::AlignmentText*, std::vector<cbrc::AlignmentText> >’ changed in GCC 7.1
223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<cbrc::AlignmentText*, vector<cbrc::AlignmentText> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::AlignmentText*, std::vector<cbrc::AlignmentText> >’ changed in GCC 7.1
1908 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::AlignmentText*, std::vector<cbrc::AlignmentText> >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::AlignmentText*, std::vector<cbrc::AlignmentText> >’ changed in GCC 7.1
1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -DLAST_POS_BYTES=4 -DALPHABET_CAPACITY=66 -DHAS_CXX_THREADS -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -I. -c -o last-pair-probs-main.o last-pair-probs-main.cc
In file included from /usr/include/c++/12/algorithm:61,
from last-pair-probs.cc:9:
/usr/include/c++/12/bits/stl_algo.h: In function ‘_OutputIterator std::__move_merge(_InputIterator, _InputIterator, _InputIterator, _InputIterator, _OutputIterator, _Compare) [with _InputIterator = __gnu_cxx::__normal_iterator<Alignment*, vector<Alignment> >; _OutputIterator = Alignment*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/12/bits/stl_algo.h:2615:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >’ changed in GCC 7.1
2615 | __move_merge(_InputIterator __first1, _InputIterator __last1,
| ^~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:2615:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h:2615:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h:2615:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h: In function ‘_OutputIterator std::__move_merge(_InputIterator, _InputIterator, _InputIterator, _InputIterator, _OutputIterator, _Compare) [with _InputIterator = Alignment*; _OutputIterator = __gnu_cxx::__normal_iterator<Alignment*, vector<Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/12/bits/stl_algo.h:2615:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, vector<Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >’ changed in GCC 7.1
1802 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__merge_sort_with_buffer(_RandomAccessIterator, _RandomAccessIterator, _Pointer, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, vector<Alignment> >; _Pointer = Alignment*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/12/bits/stl_algo.h:2682:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >’ changed in GCC 7.1
2682 | __merge_sort_with_buffer(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:2682:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >’ changed in GCC 7.1
In function ‘void std::__chunk_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Distance, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, vector<Alignment> >; _Distance = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
inlined from ‘void std::__merge_sort_with_buffer(_RandomAccessIterator, _RandomAccessIterator, _Pointer, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, vector<Alignment> >; _Pointer = Alignment*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:2693:34:
/usr/include/c++/12/bits/stl_algo.h:2672:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >’ changed in GCC 7.1
2672 | std::__insertion_sort(__first, __first + __chunk_size, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:2675:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >’ changed in GCC 7.1
2675 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:2675:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >’ changed in GCC 7.1
In function ‘void std::__merge_sort_loop(_RandomAccessIterator1, _RandomAccessIterator1, _RandomAccessIterator2, _Distance, _Compare) [with _RandomAccessIterator1 = __gnu_cxx::__normal_iterator<Alignment*, vector<Alignment> >; _RandomAccessIterator2 = Alignment*; _Distance = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
inlined from ‘void std::__merge_sort_with_buffer(_RandomAccessIterator, _RandomAccessIterator, _Pointer, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, vector<Alignment> >; _Pointer = Alignment*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:2697:26:
/usr/include/c++/12/bits/stl_algo.h:2650:39: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >’ changed in GCC 7.1
2650 | __result = std::__move_merge(__first, __first + __step_size,
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2651 | __first + __step_size,
| ~~~~~~~~~~~~~~~~~~~~~~
2652 | __first + __two_step,
| ~~~~~~~~~~~~~~~~~~~~~
2653 | __result, __comp);
| ~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:2650:39: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h:2658:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >’ changed in GCC 7.1
2658 | std::__move_merge(__first, __first + __step_size,
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2659 | __first + __step_size, __last, __result, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:2658:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >’ changed in GCC 7.1
In function ‘void std::__merge_sort_loop(_RandomAccessIterator1, _RandomAccessIterator1, _RandomAccessIterator2, _Distance, _Compare) [with _RandomAccessIterator1 = Alignment*; _RandomAccessIterator2 = __gnu_cxx::__normal_iterator<Alignment*, vector<Alignment> >; _Distance = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
inlined from ‘void std::__merge_sort_with_buffer(_RandomAccessIterator, _RandomAccessIterator, _Pointer, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, vector<Alignment> >; _Pointer = Alignment*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:2700:26:
/usr/include/c++/12/bits/stl_algo.h:2650:39: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >’ changed in GCC 7.1
2650 | __result = std::__move_merge(__first, __first + __step_size,
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2651 | __first + __step_size,
| ~~~~~~~~~~~~~~~~~~~~~~
2652 | __first + __two_step,
| ~~~~~~~~~~~~~~~~~~~~~
2653 | __result, __comp);
| ~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:2658:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >’ changed in GCC 7.1
2658 | std::__move_merge(__first, __first + __step_size,
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2659 | __first + __step_size, __last, __result, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function ‘_RandomAccessIterator std::_V2::__rotate(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, std::random_access_iterator_tag) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >]’:
/usr/include/c++/12/bits/stl_algo.h:1281:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >’ changed in GCC 7.1
1281 | __rotate(_RandomAccessIterator __first,
| ^~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1281:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h:1281:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__merge_without_buffer(_BidirectionalIterator, _BidirectionalIterator, _BidirectionalIterator, _Distance, _Distance, _Compare) [with _BidirectionalIterator = __gnu_cxx::__normal_iterator<Alignment*, vector<Alignment> >; _Distance = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/12/bits/stl_algo.h:2451:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >’ changed in GCC 7.1
2451 | __merge_without_buffer(_BidirectionalIterator __first,
| ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:2451:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h:2451:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >’ changed in GCC 7.1
In function ‘_FIter std::_V2::rotate(_FIter, _FIter, _FIter) [with _FIter = __gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >]’,
inlined from ‘void std::__merge_without_buffer(_BidirectionalIterator, _BidirectionalIterator, _BidirectionalIterator, _Distance, _Distance, _Compare) [with _BidirectionalIterator = __gnu_cxx::__normal_iterator<Alignment*, vector<Alignment> >; _Distance = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:2491:15:
/usr/include/c++/12/bits/stl_algo.h:1397:27: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >’ changed in GCC 7.1
1397 | return std::__rotate(__first, __middle, __last,
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
1398 | std::__iterator_category(__first));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__merge_without_buffer(_BidirectionalIterator, _BidirectionalIterator, _BidirectionalIterator, _Distance, _Distance, _Compare) [with _BidirectionalIterator = __gnu_cxx::__normal_iterator<Alignment*, vector<Alignment> >; _Distance = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/12/bits/stl_algo.h:2492:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >’ changed in GCC 7.1
2492 | std::__merge_without_buffer(__first, __first_cut, __new_middle,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2493 | __len11, __len22, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:2494:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >’ changed in GCC 7.1
2494 | std::__merge_without_buffer(__new_middle, __second_cut, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2495 | __len1 - __len11, __len2 - __len22, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__merge_adaptive(_BidirectionalIterator, _BidirectionalIterator, _BidirectionalIterator, _Distance, _Distance, _Pointer, _Distance, _Compare) [with _BidirectionalIterator = __gnu_cxx::__normal_iterator<Alignment*, vector<Alignment> >; _Distance = int; _Pointer = Alignment*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/12/bits/stl_algo.h:2390:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >’ changed in GCC 7.1
2390 | __merge_adaptive(_BidirectionalIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:2390:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h:2390:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >’ changed in GCC 7.1
In function ‘_FIter std::_V2::rotate(_FIter, _FIter, _FIter) [with _FIter = __gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >]’,
inlined from ‘_BidirectionalIterator1 std::__rotate_adaptive(_BidirectionalIterator1, _BidirectionalIterator1, _BidirectionalIterator1, _Distance, _Distance, _BidirectionalIterator2, _Distance) [with _BidirectionalIterator1 = __gnu_cxx::__normal_iterator<Alignment*, vector<Alignment> >; _BidirectionalIterator2 = Alignment*; _Distance = int]’ at /usr/include/c++/12/bits/stl_algo.h:2383:20,
inlined from ‘void std::__merge_adaptive(_BidirectionalIterator, _BidirectionalIterator, _BidirectionalIterator, _Distance, _Distance, _Pointer, _Distance, _Compare) [with _BidirectionalIterator = __gnu_cxx::__normal_iterator<Alignment*, vector<Alignment> >; _Distance = int; _Pointer = Alignment*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:2435:30:
/usr/include/c++/12/bits/stl_algo.h:1397:27: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >’ changed in GCC 7.1
1397 | return std::__rotate(__first, __middle, __last,
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
1398 | std::__iterator_category(__first));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__merge_adaptive(_BidirectionalIterator, _BidirectionalIterator, _BidirectionalIterator, _Distance, _Distance, _Pointer, _Distance, _Compare) [with _BidirectionalIterator = __gnu_cxx::__normal_iterator<Alignment*, vector<Alignment> >; _Distance = int; _Pointer = Alignment*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/12/bits/stl_algo.h:2438:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >’ changed in GCC 7.1
2438 | std::__merge_adaptive(__first, __first_cut, __new_middle, __len11,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2439 | __len22, __buffer, __buffer_size, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:2440:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >’ changed in GCC 7.1
2440 | std::__merge_adaptive(__new_middle, __second_cut, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2441 | __len1 - __len11,
| ~~~~~~~~~~~~~~~~~
2442 | __len2 - __len22, __buffer,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~
2443 | __buffer_size, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__stable_sort_adaptive(_RandomAccessIterator, _RandomAccessIterator, _Pointer, _Distance, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, vector<Alignment> >; _Pointer = Alignment*; _Distance = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/12/bits/stl_algo.h:2709:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >’ changed in GCC 7.1
2709 | __stable_sort_adaptive(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:2709:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h:2718:38: note: parameter passing for argument of type ‘const __gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >’ changed in GCC 7.1
2718 | std::__stable_sort_adaptive(__first, __middle, __buffer,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2719 | __buffer_size, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:2720:38: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >’ changed in GCC 7.1
2720 | std::__stable_sort_adaptive(__middle, __last, __buffer,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
2721 | __buffer_size, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:2725:40: note: parameter passing for argument of type ‘const __gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >’ changed in GCC 7.1
2725 | std::__merge_sort_with_buffer(__first, __middle, __buffer, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:2726:40: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >’ changed in GCC 7.1
2726 | std::__merge_sort_with_buffer(__middle, __last, __buffer, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:2729:28: note: parameter passing for argument of type ‘const __gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >’ changed in GCC 7.1
2729 | std::__merge_adaptive(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2730 | _Distance(__middle - __first),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2731 | _Distance(__last - __middle),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2732 | __buffer, __buffer_size,
| ~~~~~~~~~~~~~~~~~~~~~~~~
2733 | __comp);
| ~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__inplace_stable_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, vector<Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/12/bits/stl_algo.h:2739:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >’ changed in GCC 7.1
2739 | __inplace_stable_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:2739:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h:2744:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >’ changed in GCC 7.1
2744 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__inplace_stable_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, vector<Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
inlined from ‘void std::__inplace_stable_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, vector<Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:2748:33:
/usr/include/c++/12/bits/stl_algo.h:2744:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >’ changed in GCC 7.1
2744 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__inplace_stable_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, vector<Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
inlined from ‘void std::__inplace_stable_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, vector<Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:2748:33,
inlined from ‘void std::__inplace_stable_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, vector<Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:2748:33:
/usr/include/c++/12/bits/stl_algo.h:2744:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >’ changed in GCC 7.1
2744 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__inplace_stable_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, vector<Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
inlined from ‘void std::__inplace_stable_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, vector<Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:2748:33,
inlined from ‘void std::__inplace_stable_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, vector<Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:2748:33,
inlined from ‘void std::__inplace_stable_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, vector<Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:2748:33:
/usr/include/c++/12/bits/stl_algo.h:2744:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >’ changed in GCC 7.1
2744 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:2748:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >’ changed in GCC 7.1
2748 | std::__inplace_stable_sort(__first, __middle, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:2749:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >’ changed in GCC 7.1
2749 | std::__inplace_stable_sort(__middle, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:2750:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >’ changed in GCC 7.1
2750 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2751 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2752 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2753 | __comp);
| ~~~~~~~
In function ‘void std::__inplace_stable_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, vector<Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
inlined from ‘void std::__inplace_stable_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, vector<Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:2749:33,
inlined from ‘void std::__inplace_stable_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, vector<Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:2748:33,
inlined from ‘void std::__inplace_stable_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, vector<Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:2748:33:
/usr/include/c++/12/bits/stl_algo.h:2744:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >’ changed in GCC 7.1
2744 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:2748:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >’ changed in GCC 7.1
2748 | std::__inplace_stable_sort(__first, __middle, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__inplace_stable_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, vector<Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
inlined from ‘void std::__inplace_stable_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, vector<Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:2749:33,
inlined from ‘void std::__inplace_stable_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, vector<Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:2749:33,
inlined from ‘void std::__inplace_stable_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, vector<Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:2748:33,
inlined from ‘void std::__inplace_stable_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, vector<Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:2748:33:
/usr/include/c++/12/bits/stl_algo.h:2744:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >’ changed in GCC 7.1
2744 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:2748:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >’ changed in GCC 7.1
2748 | std::__inplace_stable_sort(__first, __middle, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:2749:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >’ changed in GCC 7.1
2749 | std::__inplace_stable_sort(__middle, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:2750:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >’ changed in GCC 7.1
2750 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2751 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2752 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2753 | __comp);
| ~~~~~~~
In function ‘void std::__inplace_stable_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, vector<Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
inlined from ‘void std::__inplace_stable_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, vector<Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:2749:33,
inlined from ‘void std::__inplace_stable_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, vector<Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:2748:33,
inlined from ‘void std::__inplace_stable_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, vector<Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:2748:33:
/usr/include/c++/12/bits/stl_algo.h:2750:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >’ changed in GCC 7.1
2750 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2751 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2752 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2753 | __comp);
| ~~~~~~~
In function ‘void std::__inplace_stable_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, vector<Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
inlined from ‘void std::__inplace_stable_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, vector<Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:2748:33,
inlined from ‘void std::__inplace_stable_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, vector<Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:2748:33:
/usr/include/c++/12/bits/stl_algo.h:2750:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >’ changed in GCC 7.1
2750 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2751 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2752 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2753 | __comp);
| ~~~~~~~
In function ‘void std::__inplace_stable_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, vector<Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
inlined from ‘void std::__inplace_stable_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, vector<Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:2749:33,
inlined from ‘void std::__inplace_stable_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, vector<Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:2748:33:
/usr/include/c++/12/bits/stl_algo.h:2744:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >’ changed in GCC 7.1
2744 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__inplace_stable_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, vector<Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
inlined from ‘void std::__inplace_stable_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, vector<Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:2748:33,
inlined from ‘void std::__inplace_stable_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, vector<Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:2749:33,
inlined from ‘void std::__inplace_stable_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, vector<Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:2748:33:
/usr/include/c++/12/bits/stl_algo.h:2744:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >’ changed in GCC 7.1
2744 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:2748:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >’ changed in GCC 7.1
2748 | std::__inplace_stable_sort(__first, __middle, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:2749:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >’ changed in GCC 7.1
2749 | std::__inplace_stable_sort(__middle, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:2750:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >’ changed in GCC 7.1
2750 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2751 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2752 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2753 | __comp);
| ~~~~~~~
In function ‘void std::__inplace_stable_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, vector<Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
inlined from ‘void std::__inplace_stable_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, vector<Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:2749:33,
inlined from ‘void std::__inplace_stable_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, vector<Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:2749:33,
inlined from ‘void std::__inplace_stable_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, vector<Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:2748:33:
/usr/include/c++/12/bits/stl_algo.h:2744:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >’ changed in GCC 7.1
2744 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:2748:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >’ changed in GCC 7.1
2748 | std::__inplace_stable_sort(__first, __middle, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:2749:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >’ changed in GCC 7.1
2749 | std::__inplace_stable_sort(__middle, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:2750:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >’ changed in GCC 7.1
2750 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2751 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2752 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2753 | __comp);
| ~~~~~~~
In function ‘void std::__inplace_stable_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, vector<Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
inlined from ‘void std::__inplace_stable_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, vector<Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:2749:33,
inlined from ‘void std::__inplace_stable_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, vector<Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:2748:33:
/usr/include/c++/12/bits/stl_algo.h:2750:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >’ changed in GCC 7.1
2750 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2751 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2752 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2753 | __comp);
| ~~~~~~~
In function ‘void std::__inplace_stable_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, vector<Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
inlined from ‘void std::__inplace_stable_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, vector<Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:2748:33:
/usr/include/c++/12/bits/stl_algo.h:2750:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >’ changed in GCC 7.1
2750 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2751 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2752 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2753 | __comp);
| ~~~~~~~
In function ‘void std::__inplace_stable_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, vector<Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
inlined from ‘void std::__inplace_stable_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, vector<Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:2749:33:
/usr/include/c++/12/bits/stl_algo.h:2744:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >’ changed in GCC 7.1
2744 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__inplace_stable_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, vector<Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
inlined from ‘void std::__inplace_stable_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, vector<Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:2748:33,
inlined from ‘void std::__inplace_stable_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, vector<Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:2749:33:
/usr/include/c++/12/bits/stl_algo.h:2744:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >’ changed in GCC 7.1
2744 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__inplace_stable_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, vector<Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
inlined from ‘void std::__inplace_stable_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, vector<Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:2748:33,
inlined from ‘void std::__inplace_stable_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, vector<Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:2748:33,
inlined from ‘void std::__inplace_stable_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, vector<Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:2749:33:
/usr/include/c++/12/bits/stl_algo.h:2744:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >’ changed in GCC 7.1
2744 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:2748:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >’ changed in GCC 7.1
2748 | std::__inplace_stable_sort(__first, __middle, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:2749:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >’ changed in GCC 7.1
2749 | std::__inplace_stable_sort(__middle, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:2750:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >’ changed in GCC 7.1
2750 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2751 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2752 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2753 | __comp);
| ~~~~~~~
In function ‘void std::__inplace_stable_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, vector<Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
inlined from ‘void std::__inplace_stable_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, vector<Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:2749:33,
inlined from ‘void std::__inplace_stable_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, vector<Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:2748:33,
inlined from ‘void std::__inplace_stable_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, vector<Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:2749:33:
/usr/include/c++/12/bits/stl_algo.h:2744:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >’ changed in GCC 7.1
2744 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:2748:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >’ changed in GCC 7.1
2748 | std::__inplace_stable_sort(__first, __middle, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:2749:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >’ changed in GCC 7.1
2749 | std::__inplace_stable_sort(__middle, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:2750:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >’ changed in GCC 7.1
2750 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2751 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2752 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2753 | __comp);
| ~~~~~~~
In function ‘void std::__inplace_stable_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, vector<Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
inlined from ‘void std::__inplace_stable_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, vector<Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:2748:33,
inlined from ‘void std::__inplace_stable_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, vector<Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:2749:33:
/usr/include/c++/12/bits/stl_algo.h:2750:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >’ changed in GCC 7.1
2750 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2751 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2752 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2753 | __comp);
| ~~~~~~~
In function ‘void std::__inplace_stable_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, vector<Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
inlined from ‘void std::__inplace_stable_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, vector<Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:2749:33,
inlined from ‘void std::__inplace_stable_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, vector<Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:2749:33:
/usr/include/c++/12/bits/stl_algo.h:2744:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >’ changed in GCC 7.1
2744 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__inplace_stable_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, vector<Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
inlined from ‘void std::__inplace_stable_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, vector<Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:2748:33,
inlined from ‘void std::__inplace_stable_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, vector<Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:2749:33,
inlined from ‘void std::__inplace_stable_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, vector<Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:2749:33:
/usr/include/c++/12/bits/stl_algo.h:2744:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >’ changed in GCC 7.1
2744 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:2748:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >’ changed in GCC 7.1
2748 | std::__inplace_stable_sort(__first, __middle, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:2749:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >’ changed in GCC 7.1
2749 | std::__inplace_stable_sort(__middle, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:2750:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >’ changed in GCC 7.1
2750 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2751 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2752 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2753 | __comp);
| ~~~~~~~
In function ‘void std::__inplace_stable_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, vector<Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
inlined from ‘void std::__inplace_stable_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, vector<Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:2749:33,
inlined from ‘void std::__inplace_stable_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, vector<Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:2749:33,
inlined from ‘void std::__inplace_stable_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, vector<Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:2749:33:
/usr/include/c++/12/bits/stl_algo.h:2744:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >’ changed in GCC 7.1
2744 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:2748:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >’ changed in GCC 7.1
2748 | std::__inplace_stable_sort(__first, __middle, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:2749:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >’ changed in GCC 7.1
2749 | std::__inplace_stable_sort(__middle, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:2750:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >’ changed in GCC 7.1
2750 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2751 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2752 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2753 | __comp);
| ~~~~~~~
In function ‘void std::__inplace_stable_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, vector<Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
inlined from ‘void std::__inplace_stable_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, vector<Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:2749:33,
inlined from ‘void std::__inplace_stable_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, vector<Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:2749:33:
/usr/include/c++/12/bits/stl_algo.h:2750:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >’ changed in GCC 7.1
2750 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2751 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2752 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2753 | __comp);
| ~~~~~~~
In function ‘void std::__inplace_stable_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, vector<Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
inlined from ‘void std::__inplace_stable_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, vector<Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:2749:33:
/usr/include/c++/12/bits/stl_algo.h:2750:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >’ changed in GCC 7.1
2750 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2751 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2752 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2753 | __comp);
| ~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__inplace_stable_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, vector<Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/12/bits/stl_algo.h:2750:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >’ changed in GCC 7.1
2750 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2751 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2752 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2753 | __comp);
| ~~~~~~~
In file included from /usr/include/c++/12/vector:70,
from CyclicSubsetSeed.hh:41,
from last.hh:7:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const cbrc::Alignment&}; _Tp = cbrc::Alignment; _Alloc = std::allocator<cbrc::Alignment>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<cbrc::Alignment>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
g++ -DLAST_POS_BYTES=4 -DALPHABET_CAPACITY=66 -DHAS_CXX_THREADS -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -I. -c -o CyclicSubsetSeed.o CyclicSubsetSeed.cc
In file included from /usr/include/c++/12/vector:64:
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = cbrc::Alignment; _Alloc = std::allocator<cbrc::Alignment>]’,
inlined from ‘void cbrc::AlignmentPot::add(const cbrc::Alignment&)’ at AlignmentPot.hh:18:53,
inlined from ‘void alignGapped(LastAligner&, cbrc::AlignmentPot&, cbrc::SegmentPairPot&, const SeqData&, const SubstitutionMatrices&, Phase::Enum)’ at lastal.cc:809:47:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::Alignment*, std::vector<cbrc::Alignment> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const cbrc::AlignmentText&}; _Tp = cbrc::AlignmentText; _Alloc = std::allocator<cbrc::AlignmentText>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<cbrc::AlignmentText>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = cbrc::AlignmentText; _Alloc = std::allocator<cbrc::AlignmentText>]’,
inlined from ‘void writeAlignment(LastAligner&, const cbrc::MultiSequence&, const SeqData&, const cbrc::Alignment&, const cbrc::AlignmentExtras&)’ at lastal.cc:593:31:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::AlignmentText*, std::vector<cbrc::AlignmentText> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:70,
from last-pair-probs.hh:28,
from last-pair-probs.cc:4:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {Alignment}; _Tp = Alignment; _Alloc = std::allocator<Alignment>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<Alignment>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {Alignment}; _Tp = Alignment; _Alloc = std::allocator<Alignment>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = Alignment; _Alloc = std::allocator<Alignment>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘bool readBatch(std::istream&, char, double, const std::set<std::__cxx11::basic_string<char> >&, std::vector<char>&, std::vector<const char*>&, std::vector<Alignment>&)’ at last-pair-probs.cc:492:21:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {Alignment}; _Tp = Alignment; _Alloc = std::allocator<Alignment>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = Alignment; _Alloc = std::allocator<Alignment>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘bool readBatch(std::istream&, char, double, const std::set<std::__cxx11::basic_string<char> >&, std::vector<char>&, std::vector<const char*>&, std::vector<Alignment>&)’ at last-pair-probs.cc:495:16:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {Alignment}; _Tp = Alignment; _Alloc = std::allocator<Alignment>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = Alignment; _Alloc = std::allocator<Alignment>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘bool readBatch(std::istream&, char, double, const std::set<std::__cxx11::basic_string<char> >&, std::vector<char>&, std::vector<const char*>&, std::vector<Alignment>&)’ at last-pair-probs.cc:501:19:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__stable_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, vector<Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
inlined from ‘void std::stable_sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<Alignment*, vector<Alignment> >]’ at /usr/include/c++/12/bits/stl_algo.h:5034:36,
inlined from ‘bool readBatch(std::istream&, char, double, const std::set<std::__cxx11::basic_string<char> >&, std::vector<char>&, std::vector<const char*>&, std::vector<Alignment>&)’ at last-pair-probs.cc:509:14:
/usr/include/c++/12/bits/stl_algo.h:5001:36: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >’ changed in GCC 7.1
5001 | std::__stable_sort_adaptive(__first, __last, __buf.begin(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
5002 | _DistanceType(__buf.size()), __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:4999:35: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >’ changed in GCC 7.1
4999 | std::__inplace_stable_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<cbrc::Alignment*, vector<cbrc::Alignment> >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const cbrc::Alignment&, const cbrc::Alignment&)>]’:
/usr/include/c++/12/bits/stl_algo.h:1782:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::Alignment*, std::vector<cbrc::Alignment> >’ changed in GCC 7.1
1782 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
g++ -DLAST_POS_BYTES=4 -DALPHABET_CAPACITY=66 -DHAS_CXX_THREADS -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -I. -c -o ScoreMatrix.o ScoreMatrix.cc
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<cbrc::Alignment*, vector<cbrc::Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const cbrc::Alignment&, const cbrc::Alignment&)>]’:
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::Alignment*, std::vector<cbrc::Alignment> >’ changed in GCC 7.1
1802 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::Alignment*, std::vector<cbrc::Alignment> >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<cbrc::AlignmentText*, vector<cbrc::AlignmentText> >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const cbrc::AlignmentText&, const cbrc::AlignmentText&)>]’:
/usr/include/c++/12/bits/stl_algo.h:1782:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::AlignmentText*, std::vector<cbrc::AlignmentText> >’ changed in GCC 7.1
1782 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<cbrc::AlignmentText*, vector<cbrc::AlignmentText> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const cbrc::AlignmentText&, const cbrc::AlignmentText&)>]’:
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::AlignmentText*, std::vector<cbrc::AlignmentText> >’ changed in GCC 7.1
1802 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::AlignmentText*, std::vector<cbrc::AlignmentText> >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<cbrc::Alignment*, vector<cbrc::Alignment> >; _Distance = int; _Tp = cbrc::Alignment; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const cbrc::Alignment&, const cbrc::Alignment&)>]’:
/usr/include/c++/12/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::Alignment*, std::vector<cbrc::Alignment> >’ changed in GCC 7.1
223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<cbrc::Alignment*, vector<cbrc::Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const cbrc::Alignment&, const cbrc::Alignment&)>]’:
/usr/include/c++/12/bits/stl_heap.h:339:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::Alignment*, std::vector<cbrc::Alignment> >’ changed in GCC 7.1
339 | __make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
| ^~~~~~~~~~~
/usr/include/c++/12/bits/stl_heap.h:339:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::Alignment*, std::vector<cbrc::Alignment> >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<cbrc::Alignment*, vector<cbrc::Alignment> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const cbrc::Alignment&, const cbrc::Alignment&)>]’:
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::Alignment*, std::vector<cbrc::Alignment> >’ changed in GCC 7.1
1908 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::Alignment*, std::vector<cbrc::Alignment> >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::Alignment*, std::vector<cbrc::Alignment> >’ changed in GCC 7.1
1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<cbrc::Alignment*, vector<cbrc::Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const cbrc::Alignment&, const cbrc::Alignment&)>]’,
inlined from ‘void std::__partial_sort(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<cbrc::Alignment*, vector<cbrc::Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const cbrc::Alignment&, const cbrc::Alignment&)>]’ at /usr/include/c++/12/bits/stl_algo.h:1900:25,
inlined from ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<cbrc::Alignment*, vector<cbrc::Alignment> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const cbrc::Alignment&, const cbrc::Alignment&)>]’ at /usr/include/c++/12/bits/stl_algo.h:1916:27:
/usr/include/c++/12/bits/stl_algo.h:1629:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::Alignment*, std::vector<cbrc::Alignment> >’ changed in GCC 7.1
1629 | std::__make_heap(__first, __middle, __comp);
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<cbrc::Alignment*, vector<cbrc::Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const cbrc::Alignment&, const cbrc::Alignment&)>]’,
inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<cbrc::Alignment*, vector<cbrc::Alignment> >; _Compare = bool (*)(const cbrc::Alignment&, const cbrc::Alignment&)]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18,
inlined from ‘void cbrc::AlignmentPot::sort()’ at AlignmentPot.hh:28:26,
inlined from ‘void scan(LastAligner&, const cbrc::MultiSequence&, const SeqData&, const SubstitutionMatrices&)’ at lastal.cc:1055:47:
/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::Alignment*, std::vector<cbrc::Alignment> >’ changed in GCC 7.1
1937 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1938 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1939 | __comp);
| ~~~~~~~
In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<cbrc::Alignment*, vector<cbrc::Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const cbrc::Alignment&, const cbrc::Alignment&)>]’,
inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<cbrc::Alignment*, vector<cbrc::Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const cbrc::Alignment&, const cbrc::Alignment&)>]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31,
inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<cbrc::Alignment*, vector<cbrc::Alignment> >; _Compare = bool (*)(const cbrc::Alignment&, const cbrc::Alignment&)]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18,
inlined from ‘void cbrc::AlignmentPot::sort()’ at AlignmentPot.hh:28:26,
inlined from ‘void scan(LastAligner&, const cbrc::MultiSequence&, const SeqData&, const SubstitutionMatrices&)’ at lastal.cc:1055:47:
/usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::Alignment*, std::vector<cbrc::Alignment> >’ changed in GCC 7.1
1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::Alignment*, std::vector<cbrc::Alignment> >’ changed in GCC 7.1
1854 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<cbrc::AlignmentText*, vector<cbrc::AlignmentText> >; _Distance = int; _Tp = cbrc::AlignmentText; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const cbrc::AlignmentText&, const cbrc::AlignmentText&)>]’:
/usr/include/c++/12/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::AlignmentText*, std::vector<cbrc::AlignmentText> >’ changed in GCC 7.1
223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<cbrc::AlignmentText*, vector<cbrc::AlignmentText> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const cbrc::AlignmentText&, const cbrc::AlignmentText&)>]’:
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::AlignmentText*, std::vector<cbrc::AlignmentText> >’ changed in GCC 7.1
1908 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::AlignmentText*, std::vector<cbrc::AlignmentText> >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::AlignmentText*, std::vector<cbrc::AlignmentText> >’ changed in GCC 7.1
1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -DLAST_POS_BYTES=4 -DALPHABET_CAPACITY=66 -DHAS_CXX_THREADS -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -I. -c -o LastdbArguments.o LastdbArguments.cc
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<cbrc::AlignmentText*, vector<cbrc::AlignmentText> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const cbrc::AlignmentText&, const cbrc::AlignmentText&)>]’,
inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<cbrc::AlignmentText*, vector<cbrc::AlignmentText> >; _Compare = bool (*)(const cbrc::AlignmentText&, const cbrc::AlignmentText&)]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18,
inlined from ‘void cullFinalAlignments(std::vector<cbrc::AlignmentText>&, size_t, size_t)’ at lastal.cc:913:7:
/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::AlignmentText*, std::vector<cbrc::AlignmentText> >’ changed in GCC 7.1
1937 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1938 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1939 | __comp);
| ~~~~~~~
In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<cbrc::AlignmentText*, vector<cbrc::AlignmentText> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const cbrc::AlignmentText&, const cbrc::AlignmentText&)>]’,
inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<cbrc::AlignmentText*, vector<cbrc::AlignmentText> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const cbrc::AlignmentText&, const cbrc::AlignmentText&)>]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31,
inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<cbrc::AlignmentText*, vector<cbrc::AlignmentText> >; _Compare = bool (*)(const cbrc::AlignmentText&, const cbrc::AlignmentText&)]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18,
inlined from ‘void cullFinalAlignments(std::vector<cbrc::AlignmentText>&, size_t, size_t)’ at lastal.cc:913:7:
/usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::AlignmentText*, std::vector<cbrc::AlignmentText> >’ changed in GCC 7.1
1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::AlignmentText*, std::vector<cbrc::AlignmentText> >’ changed in GCC 7.1
1854 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<cbrc::AlignmentText*, vector<cbrc::AlignmentText> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<cbrc::AlignmentText*, vector<cbrc::AlignmentText> >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from ‘void alignOneQuery(LastAligner&, cbrc::MultiSequence&, size_t, size_t, size_t, bool)’ at lastal.cc:1204:11,
inlined from ‘void runOneThread(unsigned int)’ at lastal.cc:1302:20,
inlined from ‘void runOneThreadSafely(unsigned int)’ at lastal.cc:1330:17:
/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::AlignmentText*, std::vector<cbrc::AlignmentText> >’ changed in GCC 7.1
1937 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1938 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1939 | __comp);
| ~~~~~~~
In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<cbrc::AlignmentText*, vector<cbrc::AlignmentText> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<cbrc::AlignmentText*, vector<cbrc::AlignmentText> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31,
inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<cbrc::AlignmentText*, vector<cbrc::AlignmentText> >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from ‘void alignOneQuery(LastAligner&, cbrc::MultiSequence&, size_t, size_t, size_t, bool)’ at lastal.cc:1204:11,
inlined from ‘void runOneThread(unsigned int)’ at lastal.cc:1302:20,
inlined from ‘void runOneThreadSafely(unsigned int)’ at lastal.cc:1330:17:
/usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::AlignmentText*, std::vector<cbrc::AlignmentText> >’ changed in GCC 7.1
1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::AlignmentText*, std::vector<cbrc::AlignmentText> >’ changed in GCC 7.1
1854 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<cbrc::AlignmentText*, vector<cbrc::AlignmentText> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<cbrc::AlignmentText*, vector<cbrc::AlignmentText> >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from ‘void alignOneQuery(LastAligner&, cbrc::MultiSequence&, size_t, size_t, size_t, bool)’ at lastal.cc:1204:11,
inlined from ‘size_t alignSomeQueries(size_t, unsigned int)’ at lastal.cc:1223:18:
/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::AlignmentText*, std::vector<cbrc::AlignmentText> >’ changed in GCC 7.1
1937 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1938 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1939 | __comp);
| ~~~~~~~
In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<cbrc::AlignmentText*, vector<cbrc::AlignmentText> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<cbrc::AlignmentText*, vector<cbrc::AlignmentText> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31,
inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<cbrc::AlignmentText*, vector<cbrc::AlignmentText> >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from ‘void alignOneQuery(LastAligner&, cbrc::MultiSequence&, size_t, size_t, size_t, bool)’ at lastal.cc:1204:11,
inlined from ‘size_t alignSomeQueries(size_t, unsigned int)’ at lastal.cc:1223:18:
/usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::AlignmentText*, std::vector<cbrc::AlignmentText> >’ changed in GCC 7.1
1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::AlignmentText*, std::vector<cbrc::AlignmentText> >’ changed in GCC 7.1
1854 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<cbrc::AlignmentText*, vector<cbrc::AlignmentText> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<cbrc::AlignmentText*, vector<cbrc::AlignmentText> >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from ‘size_t alignSomeQueries(size_t, unsigned int)’ at lastal.cc:1229:9:
/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::AlignmentText*, std::vector<cbrc::AlignmentText> >’ changed in GCC 7.1
1937 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1938 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1939 | __comp);
| ~~~~~~~
In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<cbrc::AlignmentText*, vector<cbrc::AlignmentText> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<cbrc::AlignmentText*, vector<cbrc::AlignmentText> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31,
inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<cbrc::AlignmentText*, vector<cbrc::AlignmentText> >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from ‘size_t alignSomeQueries(size_t, unsigned int)’ at lastal.cc:1229:9:
/usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::AlignmentText*, std::vector<cbrc::AlignmentText> >’ changed in GCC 7.1
1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<cbrc::AlignmentText*, std::vector<cbrc::AlignmentText> >’ changed in GCC 7.1
1854 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:70,
from ScoreMatrix.hh:18,
from ScoreMatrix.cc:3:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:64:
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘std::istream& cbrc::operator>>(std::istream&, ScoreMatrix&)’ at ScoreMatrix.cc:271:25:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘std::istream& cbrc::operator>>(std::istream&, ScoreMatrix&)’ at ScoreMatrix.cc:279:25:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
g++ -DLAST_POS_BYTES=4 -DALPHABET_CAPACITY=66 -DHAS_CXX_THREADS -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -I. -c -o GeneticCode.o GeneticCode.cc
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -Wl,-z,relro -Wl,-z,now -pthread -o ../bin/last-split Alphabet.o LambdaCalculator.o fileMap.o cbrc_linalg.o mcf_substitution_matrix_stats.o split/cbrc_unsplit_alignment.o split/last_split_options.o split/last-split-main.o MultiSequence.o split/cbrc_split_aligner.o split/mcf_last_splitter.o split/last-split.o
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -Wl,-z,relro -Wl,-z,now -pthread -o ../bin/last-split5 Alphabet.o LambdaCalculator.o fileMap.o cbrc_linalg.o mcf_substitution_matrix_stats.o split/cbrc_unsplit_alignment.o split/last_split_options.o split/last-split-main.o MultiSequence.o5 split/cbrc_split_aligner.o5 split/mcf_last_splitter.o5 split/last-split.o5
cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -pthread -o ../bin/last-merge-batches last-merge-batches.o
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -Wl,-z,relro -Wl,-z,now -pthread -o ../bin/last-pair-probs last-pair-probs.o last-pair-probs-main.o -lz
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -Wl,-z,relro -Wl,-z,now -pthread -o ../bin/lastdb Alphabet.o CyclicSubsetSeed.o LambdaCalculator.o ScoreMatrix.o SubsetMinimizerFinder.o TantanMasker.o dna_words_finder.o fileMap.o cbrc_linalg.o mcf_substitution_matrix_stats.o tantan.o LastdbArguments.o MultiSequence.o MultiSequenceQual.o SubsetSuffixArray.o SubsetSuffixArraySort.o lastdb.o -lz
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -Wl,-z,relro -Wl,-z,now -pthread -o ../bin/lastdb5 Alphabet.o CyclicSubsetSeed.o LambdaCalculator.o ScoreMatrix.o SubsetMinimizerFinder.o TantanMasker.o dna_words_finder.o fileMap.o cbrc_linalg.o mcf_substitution_matrix_stats.o tantan.o LastdbArguments.o MultiSequence.o5 MultiSequenceQual.o5 SubsetSuffixArray.o5 SubsetSuffixArraySort.o5 lastdb.o5 -lz
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -Wl,-z,relro -Wl,-z,now -pthread -o ../bin/lastal Alphabet.o CyclicSubsetSeed.o LambdaCalculator.o ScoreMatrix.o SubsetMinimizerFinder.o TantanMasker.o dna_words_finder.o fileMap.o tantan.o LastalArguments.o GappedXdropAligner.o GappedXdropAlignerDna.o GappedXdropAlignerPssm.o GappedXdropAligner2qual.o GappedXdropAligner3frame.o GappedXdropAlignerFrame.o mcf_aligment_path_adder.o mcf_frameshift_xdrop_aligner.o mcf_gap_costs.o GeneticCode.o GreedyXdropAligner.o LastEvaluer.o OneQualityScoreMatrix.o QualityPssmMaker.o TwoQualityScoreMatrix.o gaplessXdrop.o gaplessPssmXdrop.o gaplessTwoQualityXdrop.o cbrc_linalg.o mcf_substitution_matrix_stats.o split/cbrc_unsplit_alignment.o split/last_split_options.o alp/sls_alignment_evaluer.o alp/sls_pvalues.o alp/sls_alp_sim.o alp/sls_alp_regression.o alp/sls_alp_data.o alp/sls_alp.o alp/sls_basic.o alp/njn_localmaxstatmatrix.o alp/njn_localmaxstat.o alp/njn_localmaxstatutil.o alp/njn_dynprogprob.o alp/njn_dynprogprobproto.o alp/njn_dynprogproblim.o alp/njn_ioutil.o alp/njn_random.o alp/sls_falp_alignment_evaluer.o alp/sls_fsa1_pvalues.o alp/sls_fsa1_utils.o alp/sls_fsa1.o alp/sls_fsa1_parameters.o Alignment.o AlignmentPot.o AlignmentWrite.o Centroid.o DiagonalTable.o MultiSequence.o MultiSequenceQual.o SegmentPair.o SegmentPairPot.o SubsetSuffixArray.o SubsetSuffixArraySearch.o lastal.o split/cbrc_split_aligner.o split/mcf_last_splitter.o -lz
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -O3 -std=c++11 -pthread -Wl,-z,relro -Wl,-z,now -pthread -o ../bin/lastal5 Alphabet.o CyclicSubsetSeed.o LambdaCalculator.o ScoreMatrix.o SubsetMinimizerFinder.o TantanMasker.o dna_words_finder.o fileMap.o tantan.o LastalArguments.o GappedXdropAligner.o GappedXdropAlignerDna.o GappedXdropAlignerPssm.o GappedXdropAligner2qual.o GappedXdropAligner3frame.o GappedXdropAlignerFrame.o mcf_aligment_path_adder.o mcf_frameshift_xdrop_aligner.o mcf_gap_costs.o GeneticCode.o GreedyXdropAligner.o LastEvaluer.o OneQualityScoreMatrix.o QualityPssmMaker.o TwoQualityScoreMatrix.o gaplessXdrop.o gaplessPssmXdrop.o gaplessTwoQualityXdrop.o cbrc_linalg.o mcf_substitution_matrix_stats.o split/cbrc_unsplit_alignment.o split/last_split_options.o alp/sls_alignment_evaluer.o alp/sls_pvalues.o alp/sls_alp_sim.o alp/sls_alp_regression.o alp/sls_alp_data.o alp/sls_alp.o alp/sls_basic.o alp/njn_localmaxstatmatrix.o alp/njn_localmaxstat.o alp/njn_localmaxstatutil.o alp/njn_dynprogprob.o alp/njn_dynprogprobproto.o alp/njn_dynprogproblim.o alp/njn_ioutil.o alp/njn_random.o alp/sls_falp_alignment_evaluer.o alp/sls_fsa1_pvalues.o alp/sls_fsa1_utils.o alp/sls_fsa1.o alp/sls_fsa1_parameters.o Alignment.o5 AlignmentPot.o5 AlignmentWrite.o5 Centroid.o5 DiagonalTable.o5 MultiSequence.o5 MultiSequenceQual.o5 SegmentPair.o5 SegmentPairPot.o5 SubsetSuffixArray.o5 SubsetSuffixArraySearch.o5 lastal.o5 split/cbrc_split_aligner.o5 split/mcf_last_splitter.o5 -lz
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_test -a
create-stamp debian/debhelper-build-stamp
dh_prep -a
debian/rules override_dh_auto_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
/usr/bin/make -j install prefix=/<<PKGBUILDDIR>>/debian/last-align/usr
make[2]: Entering directory '/<<PKGBUILDDIR>>'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src'
echo \"`test -e ../.git && git describe --dirty || echo ' (HEAD -> main, tag: 1407) ' | sed -e 's/.*tag: *//' -e 's/[,) ].*//'`\" | cmp -s version.hh - || echo \"`test -e ../.git && git describe --dirty || echo ' (HEAD -> main, tag: 1407) ' | sed -e 's/.*tag: *//' -e 's/[,) ].*//'`\" > version.hh
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src'
mkdir -p /<<PKGBUILDDIR>>/debian/last-align/usr/bin
cp bin/* /<<PKGBUILDDIR>>/debian/last-align/usr/bin
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
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dh_installdocs -a
dh_installchangelogs -a
dh_installexamples -a
debian/rules override_dh_installman
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_installman
help2man --no-info --version-string="1407" \
--name='make a dotplot, a.k.a. Oxford Grid, of alignments in LAST tabular format' \
/<<PKGBUILDDIR>>/bin/last-dotplot > /<<PKGBUILDDIR>>/debian/last-align/usr/share/man/man1/last-dotplot.1
help2man --no-info --version-string="1407" \
--name="genome-scale comparison of biological sequences" \
--help-option="-h" \
/<<PKGBUILDDIR>>/debian/last-align/usr/bin/lastal > /<<PKGBUILDDIR>>/debian/last-align/usr/share/man/man1/lastal.1
help2man --no-info --version-string="1407" \
--name="genome-scale comparison of biological sequences" \
--help-option="-h" \
/<<PKGBUILDDIR>>/debian/last-align/usr/bin/lastal5 > /<<PKGBUILDDIR>>/debian/last-align/usr/share/man/man1/lastal5.1
# help2man output needs manual postprocessing - see debian/mans
#help2man --no-info --version-string="1407" \
# --name="genome-scale comparison of biological sequences" \
# --help-option="-h" \
# /<<PKGBUILDDIR>>/debian/last-align/usr/bin/lastdb > /<<PKGBUILDDIR>>/debian/last-align/usr/share/man/man1/lastdb.1
help2man --no-info --version-string="1407" \
--name="Sort MAF-format alignments by sequence name" \
/<<PKGBUILDDIR>>/bin/maf-sort > /<<PKGBUILDDIR>>/debian/last-align/usr/share/man/man1/maf-sort.1
help2man --no-info --version-string="1407" \
--name="changes the order of the sequences in MAF-format alignments" \
/<<PKGBUILDDIR>>/bin/maf-swap > /<<PKGBUILDDIR>>/debian/last-align/usr/share/man/man1/maf-swap.1
# help2man output needs manual postprocessing - see debian/mans
#help2man --no-info --version-string="1407" \
# --name="Add extra column with mapping probabilities" \
# /<<PKGBUILDDIR>>/bin/last-map-probs > /<<PKGBUILDDIR>>/debian/last-align/usr/share/man/man1/last-map-probs.1
# This script has not enough to put in a manual page.
#help2man --no-info --version-string="1407" \
# --name="Read files of lastal output, merge corresponding batches, and write them." \
# /<<PKGBUILDDIR>>/bin/last-merge-batches > /<<PKGBUILDDIR>>/debian/last-align/usr/share/man/man1/last-merge-batches.1
# # These bin were droped
#help2man --no-info --version-string="1407" \
# --name="Clean up MAF-format alignments" \
# /<<PKGBUILDDIR>>/bin/last-reduce-alignments > /<<PKGBUILDDIR>>/debian/last-align/usr/share/man/man1/last-reduce-alignments.1
#help2man --no-info --version-string="1407" \
# --name='Remove MAF-format alignments which are "dominated" by others' \
# /<<PKGBUILDDIR>>/bin/last-remove-dominated > /<<PKGBUILDDIR>>/debian/last-align/usr/share/man/man1/last-remove-dominated.1
help2man --no-info --version-string="1407" \
--name='Estimates "split" or "spliced" alignments.' \
/<<PKGBUILDDIR>>/debian/last-align/usr/bin/last-split > /<<PKGBUILDDIR>>/debian/last-align/usr/share/man/man1/last-split.1
help2man --no-info --version-string="1407" \
--name='Estimates "split" or "spliced" alignments.' \
/<<PKGBUILDDIR>>/debian/last-align/usr/bin/last-split5 > /<<PKGBUILDDIR>>/debian/last-align/usr/share/man/man1/last-split5.1
help2man --no-info --version-string="1407" \
--name="Join two or more sets of MAF-format multiple alignments" \
/<<PKGBUILDDIR>>/bin/maf-join > /<<PKGBUILDDIR>>/debian/last-align/usr/share/man/man1/maf-join.1
help2man --no-info --version-string="1407" \
--help-option="-h" \
/<<PKGBUILDDIR>>/bin/maf-cut > /<<PKGBUILDDIR>>/debian/last-align/usr/share/man/man1/maf-cut.1
help2man --no-info --version-string="1407" \
--name="Convert MAF-format alignments to tabular format" \
/<<PKGBUILDDIR>>/bin/maf-convert > /<<PKGBUILDDIR>>/debian/last-align/usr/share/man/man1/maf-convert.1
help2man --no-info --version-string="1407" \
--name="Read 2 fastq files, and write them interleaved" \
/<<PKGBUILDDIR>>/bin/fastq-interleave > /<<PKGBUILDDIR>>/debian/last-align/usr/share/man/man1/fastq-interleave.1
help2man --no-info --version-string="1407" \
--name="Read files of lastal output, merge corresponding batches, and write them" \
/<<PKGBUILDDIR>>/debian/last-align/usr/bin/last-merge-batches > /<<PKGBUILDDIR>>/debian/last-align/usr/share/man/man1/last-merge-batches.1
# help2man output needs manual postprocessing - see debian/mans
#help2man --no-info --version-string="1407" \
# --name="Read alignments of paired DNA reads to a genome, and do estimations" \
# /<<PKGBUILDDIR>>/debian/last-align/usr/bin/last-pair-probs > /<<PKGBUILDDIR>>/debian/last-align/usr/share/man/man1/last-pair-probs.1
help2man --no-info --version-string="1407" \
--name="Get alignments that have a segment with score >= threshold, with gentle masking of lowercase letters" \
/<<PKGBUILDDIR>>/bin/last-postmask > /<<PKGBUILDDIR>>/debian/last-align/usr/share/man/man1/last-postmask.1
help2man --no-info --version-string="1407" \
--name="Try to find suitable score parameters for aligning the given sequences" \
/<<PKGBUILDDIR>>/bin/last-train > /<<PKGBUILDDIR>>/debian/last-align/usr/share/man/man1/last-train.1
help2man --no-info --version-string="1407" \
--name="Keep the first of identical sequences" \
--help-option="-h" \
/<<PKGBUILDDIR>>/debian/last-align/usr/bin/fasta-nr > /<<PKGBUILDDIR>>/debian/last-align/usr/share/man/man1/fasta-nr.1
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_lintian -a
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
dh_fixperms -a
dh_missing -a
dh_dwz -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dpkg-shlibdeps: warning: debian/last-align/usr/bin/last-split5 contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/last-align/usr/bin/lastal5 contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/last-align/usr/bin/lastdb contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/last-align/usr/bin/lastdb5 contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/last-align/usr/bin/last-split contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/last-align/usr/bin/last-pair-probs contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/last-align/usr/bin/lastal contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/last-align/usr/bin/last-merge-batches was not linked against ld-linux-armhf.so.3 (it uses none of the library's symbols)
dh_installdeb -a
debian/rules override_dh_gencontrol
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_gencontrol -- -VBuilt-Using="simde (= 0.7.2-6), "
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'last-align' in '../last-align_1407-1_armhf.deb'.
dpkg-deb: building package 'last-align-dbgsym' in '../last-align-dbgsym_1407-1_armhf.deb'.
dpkg-genbuildinfo --build=any -O../last-align_1407-1_armhf.buildinfo
dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> -O../last-align_1407-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2022-08-26T23:41:40Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
last-align_1407-1_armhf.changes:
--------------------------------
Format: 1.8
Date: Tue, 23 Aug 2022 16:53:32 +0200
Source: last-align
Binary: last-align last-align-dbgsym
Architecture: armhf
Version: 1407-1
Distribution: bookworm-staging
Urgency: medium
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
last-align - genome-scale comparison of biological sequences
Changes:
last-align (1407-1) unstable; urgency=medium
.
* New upstream version
Checksums-Sha1:
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80b83ef96dd1a3409f268db857eb6c292c0495b8 6706 last-align_1407-1_armhf.buildinfo
19ccdd857f47994d934da13c847afc368a99cfb5 635620 last-align_1407-1_armhf.deb
Checksums-Sha256:
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38d52bb1403db2952d916e0b25fc82791fc16e19b16e290dc31e8f92dc2891d5 635620 last-align_1407-1_armhf.deb
Files:
d71d012ff9b73b50b287689e43cc16ad 11473684 debug optional last-align-dbgsym_1407-1_armhf.deb
c83639a1eee2c0f6479ff7b65a3510e8 6706 science optional last-align_1407-1_armhf.buildinfo
299a42853c00f3e04a30dcbf56ad7be0 635620 science optional last-align_1407-1_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
last-align-dbgsym_1407-1_armhf.deb
----------------------------------
new Debian package, version 2.0.
size 11473684 bytes: control archive=952 bytes.
669 bytes, 12 lines control
938 bytes, 9 lines md5sums
Package: last-align-dbgsym
Source: last-align
Version: 1407-1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 12672
Depends: last-align (= 1407-1)
Section: debug
Priority: optional
Description: debug symbols for last-align
Build-Ids: 528305c69f3b0addc9bda265e832c7ad902c21b7 546c730d263d5dc8caac103822664ee0e44bd062 7bfdf02f6c2d30a75c1166f8dc1bbde025f14655 8d57b3e4682c31c5524ecbf6387e55f121c1c891 9b2f44e9adf200713a22030988bda1e7fee2ac71 a119061d17cbcb06fd23800f35b8f9853f8df59a c8aef33890a70aad5ee0c61c581da3f8a63306d7 e4631c2cb7bf76e298239ace2d91846503aed00a
drwxr-xr-x root/root 0 2022-08-23 14:53 ./
drwxr-xr-x root/root 0 2022-08-23 14:53 ./usr/
drwxr-xr-x root/root 0 2022-08-23 14:53 ./usr/lib/
drwxr-xr-x root/root 0 2022-08-23 14:53 ./usr/lib/debug/
drwxr-xr-x root/root 0 2022-08-23 14:53 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2022-08-23 14:53 ./usr/lib/debug/.build-id/52/
-rw-r--r-- root/root 1034056 2022-08-23 14:53 ./usr/lib/debug/.build-id/52/8305c69f3b0addc9bda265e832c7ad902c21b7.debug
drwxr-xr-x root/root 0 2022-08-23 14:53 ./usr/lib/debug/.build-id/54/
-rw-r--r-- root/root 641104 2022-08-23 14:53 ./usr/lib/debug/.build-id/54/6c730d263d5dc8caac103822664ee0e44bd062.debug
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last-align_1407-1_armhf.deb
---------------------------
new Debian package, version 2.0.
size 635620 bytes: control archive=3120 bytes.
1227 bytes, 25 lines control
5735 bytes, 82 lines md5sums
Package: last-align
Version: 1407-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 3654
Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.5), libstdc++6 (>= 11), zlib1g (>= 1:1.1.4), python3
Recommends: python3-pil, parallel
Built-Using: simde (= 0.7.2-6)
Section: science
Priority: optional
Homepage: https://gitlab.com/mcfrith/last
Description: genome-scale comparison of biological sequences
LAST is software for comparing and aligning sequences, typically DNA or
protein sequences. LAST is similar to BLAST, but it copes better with very
large amounts of sequence data. Here are two things LAST is good at:
.
* Comparing large (e.g. mammalian) genomes.
* Mapping lots of sequence tags onto a genome.
.
The main technical innovation is that LAST finds initial matches based on
their multiplicity, instead of using a fixed size (e.g. BLAST uses 10-mers).
This allows one to map tags to genomes without repeat-masking, without becoming
overwhelmed by repetitive hits. To find these variable-sized matches, it uses
a suffix array (inspired by Vmatch). To achieve high sensitivity, it uses a
discontiguous suffix array, analogous to spaced seeds.
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+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 134144
Build-Time: 210
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 245
Job: last-align_1407-1
Machine Architecture: armhf
Package: last-align
Package-Time: 474
Source-Version: 1407-1
Space: 134144
Status: successful
Version: 1407-1
--------------------------------------------------------------------------------
Finished at 2022-08-26T23:41:40Z
Build needed 00:07:54, 134144k disk space