last-align →
1061-1 →
armhf → 2020-05-12 06:05:00
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-01
+==============================================================================+
| last-align 1061-1 (armhf) Tue, 12 May 2020 05:56:46 +0000 |
+==============================================================================+
Package: last-align
Version: 1061-1
Source Version: 1061-1
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bullseye-staging-armhf-sbuild-a51d0ddb-198e-4f19-9b79-f3c39fe10a55' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [11.7 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [12.8 MB]
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Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'last-align' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/last-align.git
Please use:
git clone https://salsa.debian.org/med-team/last-align.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 431 kB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main last-align 1061-1 (dsc) [2079 B]
Get:2 http://172.17.0.1/private bullseye-staging/main last-align 1061-1 (tar) [412 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main last-align 1061-1 (diff) [16.8 kB]
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Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/last-align-kzYEWK/last-align-1061' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/last-align-kzYEWK' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-KcXWDq/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-KcXWDq/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-KcXWDq/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-KcXWDq/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-KcXWDq/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-KcXWDq/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-KcXWDq/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-KcXWDq/apt_archive ./ Packages [434 B]
Fetched 2110 B in 0s (9381 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libpam-cap netbase
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 24 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-KcXWDq/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
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(Reading database ... 12224 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 12), help2man, python3-pil, zlib1g-dev, libsimde-dev (>= 0.0.0.git.20200419)
Filtered Build-Depends: debhelper-compat (= 12), help2man, python3-pil, zlib1g-dev, libsimde-dev (>= 0.0.0.git.20200419)
dpkg-deb: building package 'sbuild-build-depends-last-align-dummy' in '/<<BUILDDIR>>/resolver-KcXWDq/apt_archive/sbuild-build-depends-last-align-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-last-align-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-KcXWDq/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-KcXWDq/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-KcXWDq/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-KcXWDq/apt_archive ./ Sources [540 B]
Get:5 copy:/<<BUILDDIR>>/resolver-KcXWDq/apt_archive ./ Packages [623 B]
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Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install last-align build dependencies (apt-based resolver)
----------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libpam-cap netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
groff-base help2man intltool-debian libarchive-zip-perl libbsd0 libcroco3
libdebhelper-perl libelf1 libexpat1 libfile-stripnondeterminism-perl
libfreetype6 libglib2.0-0 libicu63 libimagequant0 libjbig0 libjpeg62-turbo
liblcms2-2 liblocale-gettext-perl libmagic-mgc libmagic1 libmpdec2
libpipeline1 libpng16-16 libpython3-stdlib libpython3.8-minimal
libpython3.8-stdlib libsigsegv2 libsimde-dev libssl1.1 libsub-override-perl
libtiff5 libtinfo5 libtool libuchardet0 libwebp6 libwebpdemux2 libwebpmux3
libxml2 m4 man-db mime-support po-debconf python3 python3-minimal
python3-pil python3.8 python3.8-minimal sensible-utils zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff
liblcms2-utils libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc
apparmor less www-browser libmail-box-perl python3-doc python3-tk
python3-venv python-pil-doc python3-pil-dbg python3.8-venv python3.8-doc
binfmt-support
Recommended packages:
curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs libltdl-dev libmail-sendmail-perl python3-olefile
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
groff-base help2man intltool-debian libarchive-zip-perl libbsd0 libcroco3
libdebhelper-perl libelf1 libexpat1 libfile-stripnondeterminism-perl
libfreetype6 libglib2.0-0 libicu63 libimagequant0 libjbig0 libjpeg62-turbo
liblcms2-2 liblocale-gettext-perl libmagic-mgc libmagic1 libmpdec2
libpipeline1 libpng16-16 libpython3-stdlib libpython3.8-minimal
libpython3.8-stdlib libsigsegv2 libsimde-dev libssl1.1 libsub-override-perl
libtiff5 libtinfo5 libtool libuchardet0 libwebp6 libwebpdemux2 libwebpmux3
libxml2 m4 man-db mime-support po-debconf python3 python3-minimal
python3-pil python3.8 python3.8-minimal
sbuild-build-depends-last-align-dummy sensible-utils zlib1g-dev
0 upgraded, 62 newly installed, 0 to remove and 24 not upgraded.
Need to get 27.1 MB of archives.
After this operation, 96.2 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-KcXWDq/apt_archive ./ sbuild-build-depends-last-align-dummy 0.invalid.0 [912 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf liblocale-gettext-perl armhf 1.07-4 [18.1 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf libbsd0 armhf 0.10.0-1 [112 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf libtinfo5 armhf 6.2-1 [318 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-5 [783 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.2-2 [29.6 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.1-1 [1262 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf libssl1.1 armhf 1.1.1g-1 [1272 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8-minimal armhf 3.8.3~rc1-1 [751 kB]
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Get:13 http://172.17.0.1/private bullseye-staging/main armhf python3.8-minimal armhf 3.8.3~rc1-1 [1627 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf python3-minimal armhf 3.8.2-3 [37.6 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf mime-support all 3.64 [37.8 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf libmpdec2 armhf 2.4.2-3 [68.1 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8-stdlib armhf 3.8.3~rc1-1 [1598 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf python3.8 armhf 3.8.3~rc1-1 [415 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf libpython3-stdlib armhf 3.8.2-3 [20.8 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf python3 armhf 3.8.2-3 [63.7 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf sensible-utils all 0.0.12+nmu1 [16.0 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.38-4 [262 kB]
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Get:24 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.38-4 [66.9 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-10 [117 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-4 [185 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11.1 [341 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.2-1 [775 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-10 [435 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-14 [513 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 13 [184 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.8.0-1 [24.2 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.8.0-1 [14.8 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.176-1.1 [158 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13-5 [142 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.64.2-1 [1158 kB]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf libicu63 armhf 63.2-3 [7987 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.10+dfsg-5 [592 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf libcroco3 armhf 0.6.13-1 [133 kB]
Get:45 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-10 [1219 kB]
Get:46 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:47 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:48 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 13 [1002 kB]
Get:49 http://172.17.0.1/private bullseye-staging/main armhf help2man armhf 1.47.15 [181 kB]
Get:50 http://172.17.0.1/private bullseye-staging/main armhf libpng16-16 armhf 1.6.37-2 [274 kB]
Get:51 http://172.17.0.1/private bullseye-staging/main armhf libfreetype6 armhf 2.10.1-2 [330 kB]
Get:52 http://172.17.0.1/private bullseye-staging/main armhf libimagequant0 armhf 2.12.2-1.1 [27.2 kB]
Get:53 http://172.17.0.1/private bullseye-staging/main armhf libjbig0 armhf 2.1-3.1+b2 [27.6 kB]
Get:54 http://172.17.0.1/private bullseye-staging/main armhf libjpeg62-turbo armhf 1:1.5.2-2+b1 [110 kB]
Get:55 http://172.17.0.1/private bullseye-staging/main armhf liblcms2-2 armhf 2.9-4 [119 kB]
Get:56 http://172.17.0.1/private bullseye-staging/main armhf libsimde-dev all 0.0.0.git.20200424-1 [87.6 kB]
Get:57 http://172.17.0.1/private bullseye-staging/main armhf libwebp6 armhf 0.6.1-2 [228 kB]
Get:58 http://172.17.0.1/private bullseye-staging/main armhf libtiff5 armhf 4.1.0+git191117-2 [250 kB]
Get:59 http://172.17.0.1/private bullseye-staging/main armhf libwebpdemux2 armhf 0.6.1-2 [86.7 kB]
Get:60 http://172.17.0.1/private bullseye-staging/main armhf libwebpmux3 armhf 0.6.1-2 [94.2 kB]
Get:61 http://172.17.0.1/private bullseye-staging/main armhf python3-pil armhf 7.0.0-4 [393 kB]
Get:62 http://172.17.0.1/private bullseye-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [184 kB]
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Setting up libpipeline1:armhf (1.5.2-2) ...
Setting up libsimde-dev (0.0.0.git.20200424-1) ...
Setting up liblcms2-2:armhf (2.9-4) ...
Setting up mime-support (3.64) ...
Setting up libmagic-mgc (1:5.38-4) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libglib2.0-0:armhf (2.64.2-1) ...
No schema files found: doing nothing.
Setting up libdebhelper-perl (13) ...
Setting up libmagic1:armhf (1:5.38-4) ...
Setting up gettext-base (0.19.8.1-10) ...
Setting up file (1:5.38-4) ...
Setting up libjbig0:armhf (2.1-3.1+b2) ...
Setting up libicu63:armhf (63.2-3) ...
Setting up autotools-dev (20180224.1) ...
Setting up libjpeg62-turbo:armhf (1:1.5.2-2+b1) ...
Setting up libsigsegv2:armhf (2.12-2) ...
Setting up libimagequant0:armhf (2.12.2-1.1) ...
Setting up libpng16-16:armhf (1.6.37-2) ...
Setting up autopoint (0.19.8.1-10) ...
Setting up libwebp6:armhf (0.6.1-2) ...
Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-2) ...
Setting up sensible-utils (0.0.12+nmu1) ...
Setting up libuchardet0:armhf (0.0.6-3) ...
Setting up libsub-override-perl (0.09-2) ...
Setting up libtiff5:armhf (4.1.0+git191117-2) ...
Setting up libmpdec2:armhf (2.4.2-3) ...
Setting up libpython3.8-stdlib:armhf (3.8.3~rc1-1) ...
Setting up python3.8 (3.8.3~rc1-1) ...
Setting up libwebpmux3:armhf (0.6.1-2) ...
Setting up libbsd0:armhf (0.10.0-1) ...
Setting up libtinfo5:armhf (6.2-1) ...
Setting up libelf1:armhf (0.176-1.1) ...
Setting up libxml2:armhf (2.9.10+dfsg-5) ...
Setting up liblocale-gettext-perl (1.07-4) ...
Setting up libpython3-stdlib:armhf (3.8.2-3) ...
Setting up libfile-stripnondeterminism-perl (1.8.0-1) ...
Setting up libtool (2.4.6-14) ...
Setting up libwebpdemux2:armhf (0.6.1-2) ...
Setting up m4 (1.4.18-4) ...
Setting up python3 (3.8.2-3) ...
Setting up help2man (1.47.15) ...
Setting up libfreetype6:armhf (2.10.1-2) ...
Setting up bsdmainutils (11.1.2) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up libcroco3:armhf (0.6.13-1) ...
Setting up autoconf (2.69-11.1) ...
Setting up dh-strip-nondeterminism (1.8.0-1) ...
Setting up dwz (0.13-5) ...
Setting up groff-base (1.22.4-5) ...
Setting up automake (1:1.16.2-1) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up gettext (0.19.8.1-10) ...
Setting up man-db (2.9.1-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up python3-pil:armhf (7.0.0-4) ...
Setting up po-debconf (1.0.21) ...
Setting up dh-autoreconf (19) ...
Setting up debhelper (13) ...
Setting up sbuild-build-depends-last-align-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.30-4+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.15.0-76-generic armhf (armv8l)
Toolchain package versions: binutils_2.34-5+rpi1 dpkg-dev_1.19.7 g++-9_9.3.0-10+rpi1 gcc-9_9.3.0-10+rpi1 libc6-dev_2.30-4+rpi1 libstdc++-9-dev_9.3.0-10+rpi1 libstdc++6_10-20200418-1+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2
Package versions: adduser_3.118 apt_2.0.2 autoconf_2.69-11.1 automake_1:1.16.2-1 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11+rpi1 base-passwd_3.5.47 bash_5.0-6 binutils_2.34-5+rpi1 binutils-arm-linux-gnueabihf_2.34-5+rpi1 binutils-common_2.34-5+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.34-0.1 build-essential_12.8 bzip2_1.0.8-2 coreutils_8.30-3 cpp_4:9.2.1-3.1+rpi1 cpp-9_9.3.0-10+rpi1 dash_0.5.10.2-7 debconf_1.5.74 debhelper_13 debianutils_4.9.1 dh-autoreconf_19 dh-strip-nondeterminism_1.8.0-1 diffutils_1:3.7-3 dirmngr_2.2.20-1 dpkg_1.19.7 dpkg-dev_1.19.7 dwz_0.13-5 e2fsprogs_1.45.6-1 fakeroot_1.24-1 fdisk_2.34-0.1 file_1:5.38-4 findutils_4.7.0-1 g++_4:9.2.1-3.1+rpi1 g++-9_9.3.0-10+rpi1 gcc_4:9.2.1-3.1+rpi1 gcc-10-base_10-20200418-1+rpi1 gcc-9_9.3.0-10+rpi1 gcc-9-base_9.3.0-10+rpi1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gnupg_2.2.20-1 gnupg-l10n_2.2.20-1 gnupg-utils_2.2.20-1 gpg_2.2.20-1 gpg-agent_2.2.20-1 gpg-wks-client_2.2.20-1 gpg-wks-server_2.2.20-1 gpgconf_2.2.20-1 gpgsm_2.2.20-1 gpgv_2.2.20-1 grep_3.4-1 groff-base_1.22.4-5 gzip_1.10-2 help2man_1.47.15 hostname_3.23 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 iputils-ping_3:20190709-3 libacl1_2.2.53-6 libapt-pkg6.0_2.0.2 libarchive-zip-perl_1.68-1 libasan5_9.3.0-10+rpi1 libassuan0_2.5.3-7 libatomic1_10-20200418-1+rpi1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-3 libaudit1_1:2.8.5-3 libbinutils_2.34-5+rpi1 libblkid1_2.34-0.1 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.30-4+rpi1 libc-dev-bin_2.30-4+rpi1 libc6_2.30-4+rpi1 libc6-dev_2.30-4+rpi1 libcap-ng0_0.7.9-2.1+b1 libcap2_1:2.33-1 libcap2-bin_1:2.33-1 libcc1-0_10-20200418-1+rpi1 libcom-err2_1.45.6-1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.16-1 libcrypt1_1:4.4.16-1 libctf-nobfd0_2.34-5+rpi1 libctf0_2.34-5+rpi1 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.251 libdebhelper-perl_13 libdpkg-perl_1.19.7 libelf1_0.176-1.1 libexpat1_2.2.9-1 libext2fs2_1.45.6-1 libfakeroot_1.24-1 libfdisk1_2.34-0.1 libffi7_3.3-4 libfile-stripnondeterminism-perl_1.8.0-1 libfreetype6_2.10.1-2 libgcc-9-dev_9.3.0-10+rpi1 libgcc-s1_10-20200418-1+rpi1 libgcc1_1:10-20200418-1+rpi1 libgcrypt20_1.8.5-5 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libglib2.0-0_2.64.2-1 libgmp10_2:6.2.0+dfsg-4 libgnutls30_3.6.13-2 libgomp1_10-20200418-1+rpi1 libgpg-error0_1.37-1 libhogweed5_3.5.1+really3.5.1-2 libicu63_63.2-3 libidn2-0_2.3.0-1 libimagequant0_2.12.2-1.1 libisl22_0.22.1-1 libjbig0_2.1-3.1+b2 libjpeg62-turbo_1:1.5.2-2+b1 libksba8_1.3.5-2 liblcms2-2_2.9-4 libldap-2.4-2_2.4.49+dfsg-4+rpi1 libldap-common_2.4.49+dfsg-4+rpi1 liblocale-gettext-perl_1.07-4 liblz4-1_1.9.2-2 liblzma5_5.2.4-1 libmagic-mgc_1:5.38-4 libmagic1_1:5.38-4 libmount1_2.34-0.1 libmpc3_1.1.0-1 libmpdec2_2.4.2-3 libmpfr6_4.0.2-1 libncursesw6_6.2-1 libnettle7_3.5.1+really3.5.1-2 libnpth0_1.6-1 libp11-kit0_0.23.20-1 libpam-cap_1:2.33-1 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.34-7 libpcre3_2:8.39-12 libperl5.30_5.30.0-10 libpipeline1_1.5.2-2 libpng16-16_1.6.37-2 libpython3-stdlib_3.8.2-3 libpython3.8-minimal_3.8.3~rc1-1 libpython3.8-stdlib_3.8.3~rc1-1 libreadline7_7.0-5 libreadline8_8.0-4 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.4.3-1+rpi1 libselinux1_3.0-1+b1 libsemanage-common_3.0-1 libsemanage1_3.0-1+b1 libsepol1_3.0-1 libsigsegv2_2.12-2 libsimde-dev_0.0.0.git.20200424-1 libsmartcols1_2.34-0.1 libsqlite3-0_3.31.1-5 libss2_1.45.6-1 libssl1.1_1.1.1g-1 libstdc++-9-dev_9.3.0-10+rpi1 libstdc++6_10-20200418-1+rpi1 libsub-override-perl_0.09-2 libsystemd0_245.5-1+rpi1 libtasn1-6_4.16.0-2 libtiff5_4.1.0+git191117-2 libtinfo5_6.2-1 libtinfo6_6.2-1 libtool_2.4.6-14 libubsan1_10-20200418-1+rpi1 libuchardet0_0.0.6-3 libudev1_245.5-1+rpi1 libunistring2_0.9.10-2 libuuid1_2.34-0.1 libwebp6_0.6.1-2 libwebpdemux2_0.6.1-2 libwebpmux3_0.6.1-2 libxml2_2.9.10+dfsg-5 libzstd1_1.4.4+dfsg-3+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2 login_1:4.8.1-1 logsave_1.45.6-1 lsb-base_11.1.0+rpi1 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.1-1 mawk_1.3.4.20200120-2 mime-support_3.64 mount_2.34-0.1 ncurses-base_6.2-1 ncurses-bin_6.2-1 netbase_6.1 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.30.0-10 perl-base_5.30.0-10 perl-modules-5.30_5.30.0-10 pinentry-curses_1.1.0-3 po-debconf_1.0.21 python3_3.8.2-3 python3-minimal_3.8.2-3 python3-pil_7.0.0-4 python3.8_3.8.3~rc1-1 python3.8-minimal_3.8.3~rc1-1 raspbian-archive-keyring_20120528.2 readline-common_8.0-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-last-align-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-3 tar_1.30+dfsg-7 tzdata_2019c-3 util-linux_2.34-0.1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Sun May 10 11:58:09 2020 UTC
gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./last-align_1061-1.dsc
dpkg-source: info: extracting last-align in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking last-align_1061.orig.tar.xz
dpkg-source: info: unpacking last-align_1061-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying 2to3.patch
dpkg-source: info: applying helpMakefiles.patch
dpkg-source: info: applying simde
dpkg-source: info: applying fix-959866.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-a51d0ddb-198e-4f19-9b79-f3c39fe10a55
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package last-align
dpkg-buildpackage: info: source version 1061-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean
make -j4 clean
make[2]: Entering directory '/<<PKGBUILDDIR>>'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src'
rm -f lastdb lastal last-split last-merge-batches last-pair-probs lastdb8 lastal8 last-split8 *.o* */*.o*
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
for i in last-merge-batches last-pair-probs last-split last-split8 lastal lastal8 lastdb lastdb8; \
do \
for j in avx avx2 sse2 sse3 sse4.1 ssse3 ; \
do \
rm -f src/$i-$j ; \
done ; \
done
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_clean
debian/rules binary-arch
dh binary-arch
dh_update_autotools_config -a
dh_autoreconf -a
dh_auto_configure -a
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_build
make -j4 "INSTALL=install --strip-program=true"
make[2]: Entering directory '/<<PKGBUILDDIR>>'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src'
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o Alphabet.o Alphabet.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o CyclicSubsetSeed.o CyclicSubsetSeed.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o LambdaCalculator.o LambdaCalculator.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o ScoreMatrix.o ScoreMatrix.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o SubsetMinimizerFinder.o SubsetMinimizerFinder.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o TantanMasker.o TantanMasker.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o fileMap.o fileMap.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o cbrc_linalg.o cbrc_linalg.cc
In file included from /usr/include/c++/9/vector:72,
from ScoreMatrix.hh:15,
from ScoreMatrix.cc:3:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from ScoreMatrix.hh:15,
from ScoreMatrix.cc:3:
/usr/include/c++/9/bits/stl_vector.h: In function 'std::istream& cbrc::operator>>(std::istream&, cbrc::ScoreMatrix&)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o mcf_substitution_matrix_stats.o mcf_substitution_matrix_stats.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o tantan.o tantan.cc
if test -e ../.hg ; \
then echo \"`hg id -n`\" | cmp -s version.hh - || echo \"`hg id -n`\" > version.hh ; \
elif test -e ../.hg_archival.txt ; \
then echo \"`grep latesttagdistance ../.hg_archival.txt | cut -d' ' -f2`\" | cmp -s version.hh - || echo \"`grep latesttagdistance ../.hg_archival.txt | cut -d' ' -f2`\" > version.hh ; \
else test -e version.hh || echo \"UNKNOWN\" > version.hh ; \
fi
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o MultiSequence.o MultiSequence.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o MultiSequenceQual.o MultiSequenceQual.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o SubsetSuffixArray.o SubsetSuffixArray.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o SubsetSuffixArraySort.o SubsetSuffixArraySort.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o lastdb.o lastdb.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o LastalArguments.o LastalArguments.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o GappedXdropAligner.o GappedXdropAligner.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o GappedXdropAlignerDna.o GappedXdropAlignerDna.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o GappedXdropAlignerPssm.o GappedXdropAlignerPssm.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o GappedXdropAligner2qual.o GappedXdropAligner2qual.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o GappedXdropAligner3frame.o GappedXdropAligner3frame.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o mcf_gap_costs.o mcf_gap_costs.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o GeneticCode.o GeneticCode.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o GreedyXdropAligner.o GreedyXdropAligner.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o LastEvaluer.o LastEvaluer.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o OneQualityScoreMatrix.o OneQualityScoreMatrix.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o QualityPssmMaker.o QualityPssmMaker.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o TwoQualityScoreMatrix.o TwoQualityScoreMatrix.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o gaplessXdrop.o gaplessXdrop.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o gaplessPssmXdrop.o gaplessPssmXdrop.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o gaplessTwoQualityXdrop.o gaplessTwoQualityXdrop.cc
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -c -o alp/sls_alignment_evaluer.o alp/sls_alignment_evaluer.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -c -o alp/sls_pvalues.o alp/sls_pvalues.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -c -o alp/sls_alp_sim.o alp/sls_alp_sim.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -c -o alp/sls_alp_regression.o alp/sls_alp_regression.cpp
In file included from /usr/include/c++/9/vector:72,
from alp/sls_pvalues.hpp:41,
from alp/sls_alignment_evaluer.hpp:39,
from alp/sls_alignment_evaluer.cpp:37:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from alp/sls_alp_regression.hpp:46,
from alp/sls_alp_regression.cpp:36:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<double, long int>*, std::vector<std::pair<double, long int> > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, long int>*, std::vector<std::pair<double, long int> > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, long int>*, std::vector<std::pair<double, long int> > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator<std::pair<double, long int>*, std::vector<std::pair<double, long int> > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, long int>*, std::vector<std::pair<double, long int> > >' changed in GCC 7.1
78 | __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b,
| ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, long int>*, std::vector<std::pair<double, long int> > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, long int>*, std::vector<std::pair<double, long int> > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, long int>*, std::vector<std::pair<double, long int> > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, long int>*, std::vector<std::pair<double, long int> > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, long int>*, std::vector<std::pair<double, long int> > >' changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from alp/sls_alp_regression.hpp:46,
from alp/sls_alp_regression.cpp:36:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void Sls::AlignmentEvaluer::initParameters(const Sls::AlignmentEvaluerParametersWithErrors&)':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from alp/sls_alp_regression.hpp:46,
from alp/sls_alp_regression.cpp:36:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In static member function 'static void Sls::alp_reg::find_tetta_general(double (*)(double, void*), void*, double, double, long int, double, std::vector<double>&)':
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -c -o alp/sls_alp_data.o alp/sls_alp_data.cpp
/usr/include/c++/9/bits/stl_algo.h: In static member function 'static double Sls::alp_reg::median(long int, double*)':
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from alp/sls_alp_regression.hpp:46,
from alp/sls_alp_regression.cpp:36:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<double, long int>*, std::vector<std::pair<double, long int> > >; _Distance = int; _Tp = std::pair<double, long int>; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, long int>*, std::vector<std::pair<double, long int> > >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from alp/sls_alp_regression.hpp:46,
from alp/sls_alp_regression.cpp:36:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<double, long int>*, std::vector<std::pair<double, long int> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, long int>*, std::vector<std::pair<double, long int> > >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, long int>*, std::vector<std::pair<double, long int> > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1920:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, long int>*, std::vector<std::pair<double, long int> > >' changed in GCC 7.1
1920 | std::__move_median_to_first(__first, __first + 1, __mid, __last - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1921 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1920:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, long int>*, std::vector<std::pair<double, long int> > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, long int>*, std::vector<std::pair<double, long int> > >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In static member function 'static double Sls::alp_reg::robust_sum(double*, long int, long int, bool*&)':
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, long int>*, std::vector<std::pair<double, long int> > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, long int>*, std::vector<std::pair<double, long int> > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, long int>*, std::vector<std::pair<double, long int> > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -c -o alp/sls_alp.o alp/sls_alp.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -c -o alp/sls_basic.o alp/sls_basic.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -c -o alp/njn_localmaxstatmatrix.o alp/njn_localmaxstatmatrix.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -c -o alp/njn_localmaxstat.o alp/njn_localmaxstat.cpp
In file included from /usr/include/c++/9/algorithm:62,
from alp/sls_alp_regression.hpp:46,
from alp/sls_alp_data.hpp:62,
from alp/sls_alp_data.cpp:36:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from alp/sls_alp_regression.hpp:46,
from alp/sls_alp_data.hpp:62,
from alp/sls_alp_data.cpp:36:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from alp/sls_alp_regression.hpp:46,
from alp/sls_alp_data.hpp:62,
from alp/sls_alp_data.cpp:36:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In constructor 'Sls::importance_sampling::importance_sampling(Sls::alp_data*, long int, long int, double, long int, long int**, double*, double*)':
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -c -o alp/njn_localmaxstatutil.o alp/njn_localmaxstatutil.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -c -o alp/njn_dynprogprob.o alp/njn_dynprogprob.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -c -o alp/njn_dynprogprobproto.o alp/njn_dynprogprobproto.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -c -o alp/njn_dynprogproblim.o alp/njn_dynprogproblim.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -c -o alp/njn_ioutil.o alp/njn_ioutil.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -c -o alp/njn_random.o alp/njn_random.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -c -o alp/sls_falp_alignment_evaluer.o alp/sls_falp_alignment_evaluer.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -c -o alp/sls_fsa1_pvalues.o alp/sls_fsa1_pvalues.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -c -o alp/sls_fsa1_utils.o alp/sls_fsa1_utils.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -c -o alp/sls_fsa1.o alp/sls_fsa1.cpp
In file included from /usr/include/c++/9/vector:72,
from alp/sls_fsa1_pvalues.hpp:41,
from alp/sls_falp_alignment_evaluer.hpp:40,
from alp/sls_falp_alignment_evaluer.cpp:37:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void Sls::FrameshiftAlignmentEvaluer::initParameters(const Sls::AlignmentEvaluerParametersWithErrors&)':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -c -o alp/sls_fsa1_parameters.o alp/sls_fsa1_parameters.cpp
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o Alignment.o Alignment.cc
In file included from /usr/include/c++/9/vector:72,
from alp/sls_fsa1_utils.hpp:40,
from alp/sls_fsa1_utils.cpp:36:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
509 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
In file included from /usr/include/c++/9/vector:67,
from alp/sls_fsa1_utils.hpp:40,
from alp/sls_fsa1_utils.cpp:36:
/usr/include/c++/9/bits/stl_vector.h: In static member function 'static void Sls::FSA_utils::multiply_matrix_and_vector(const std::vector<std::vector<double> >&, const std::vector<double>&, std::vector<double>&)':
/usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
957 | _M_fill_insert(end(), __new_size - size(), __x);
| ^~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In static member function 'static void Sls::FSA_utils::multiply_matrices(const std::vector<std::vector<double> >&, const std::vector<std::vector<double> >&, std::vector<std::vector<double> >&)':
/usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
957 | _M_fill_insert(end(), __new_size - size(), __x);
| ^~~~~~~~~~~~~~
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o AlignmentPot.o AlignmentPot.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o AlignmentWrite.o AlignmentWrite.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o Centroid.o Centroid.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o DiagonalTable.o DiagonalTable.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o SegmentPair.o SegmentPair.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o SegmentPairPot.o SegmentPairPot.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o SubsetSuffixArraySearch.o SubsetSuffixArraySearch.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o lastal.o lastal.cc
In file included from /usr/include/c++/9/vector:72,
from alp/sls_alp_regression.hpp:43,
from alp/sls_fsa1.hpp:39,
from alp/sls_fsa1.cpp:36:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from alp/sls_alp_regression.hpp:43,
from alp/sls_fsa1.hpp:39,
from alp/sls_fsa1.cpp:36:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void Sls::IS1_general_simulation::calculate_weight_W1_for_fixed_lengths_using_recursions(long int, long int, double&, bool, std::vector<std::vector<double> >*, std::vector<std::vector<double> >*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o split/cbrc_unsplit_alignment.o split/cbrc_unsplit_alignment.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o split/last-split-main.o split/last-split-main.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o split/cbrc_split_aligner.o split/cbrc_split_aligner.cc
/usr/include/c++/9/bits/stl_vector.h: In static member function 'static void Sls::test::collect_and_output_E_distr_upto_fixed_ALP(long int, std::string, Sls::two_dim_layer_alignment_algorithm<long int>&, Sls::IS1_general_simulation&, long int, double, long int, long int, Sls::FALP_set_of_parameters&, bool, bool, Sls::IS1_general*, double*, long int*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
split/cbrc_split_aligner.cc: In member function 'void cbrc::SplitAligner::initSpliceSignals(unsigned int)':
split/cbrc_split_aligner.cc:853:14: warning: comparison of integer expressions of different signedness: 'const unsigned int' and 'int' [-Wsign-compare]
853 | if (a.rend > chromEnd - chromBeg)
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o split/last-split.o split/last-split.cc
/usr/include/c++/9/bits/stl_vector.h: In static member function 'static void Sls::test::collect_and_output_E_distr_upto_fixed_ALP_with_saving_of_states(bool, double&, long int, std::string, Sls::two_dim_layer_alignment_algorithm<long int>&, Sls::IS1_general_simulation&, long int, double, long int, long int, Sls::FALP_set_of_parameters&, bool&, bool, bool, double, bool&, long int&, double, bool, Sls::mult_states_type*, Sls::mult_states_type*&, long int&, bool, long int, Sls::IS1_general*, double*, long int*, bool)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from split/cbrc_unsplit_alignment.hh:12,
from split/cbrc_split_aligner.hh:7,
from split/cbrc_split_aligner.cc:4:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from split/cbrc_unsplit_alignment.hh:12,
from split/cbrc_split_aligner.hh:7,
from split/cbrc_split_aligner.cc:4:
/usr/include/c++/9/bits/stl_vector.h: In member function 'std::vector<double> cbrc::SplitAligner::marginalProbs(unsigned int, unsigned int, unsigned int, unsigned int) const':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In function 'static void Sls::test::collect_and_output_E_distr_upto_fixed_ALP_with_saving_of_states(bool, double&, long int, std::string, Sls::two_dim_layer_alignment_algorithm<long int>&, Sls::IS1_general_simulation&, long int, double, long int, long int, Sls::FALP_set_of_parameters&, bool&, bool, bool, double, bool&, long int&, double, bool, Sls::mult_states_type*, Sls::mult_states_type*&, long int&, bool, long int, Sls::IS1_general*, double*, long int*, bool)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from alp/sls_alp_regression.hpp:46,
from alp/sls_fsa1.hpp:39,
from alp/sls_fsa1.cpp:36:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from alp/sls_alp_regression.hpp:46,
from alp/sls_fsa1.hpp:39,
from alp/sls_fsa1.cpp:36:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from alp/sls_alp_regression.hpp:46,
from alp/sls_fsa1.hpp:39,
from alp/sls_fsa1.cpp:36:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In static member function 'static void Sls::test::calculate_ungapped_lambda(long int, double*, double*, long int**, double&)':
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
cc -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o last-merge-batches.o last-merge-batches.c
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o last-pair-probs.o last-pair-probs.cc
/usr/include/c++/9/bits/stl_algo.h: In static member function 'static void Sls::test::calculate_ungapped_lambda_general(double (*)(double, void*), void*, double&)':
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o last-pair-probs-main.o last-pair-probs-main.cc
In file included from /usr/include/c++/9/vector:67,
from alp/sls_alp_regression.hpp:43,
from alp/sls_fsa1.hpp:39,
from alp/sls_fsa1.cpp:36:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void Sls::test::FSA_IS(bool, long int, long int, const long int*, const long int* const*, const double*, const double*, long int, long int, long int, long int, long int, long int, std::string, std::string, std::string, std::string, double, double, bool, double, double, long int, long int, long int, bool, bool, double, Sls::FALP_set_of_parameters&, Sls::par_test1_type*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
g++ -DLAST_INT_TYPE=size_t -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o MultiSequence.o8 MultiSequence.cc
g++ -DLAST_INT_TYPE=size_t -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o MultiSequenceQual.o8 MultiSequenceQual.cc
In file included from /usr/include/c++/9/vector:72,
from last-pair-probs.hh:28,
from last-pair-probs.cc:4:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {Alignment}; _Tp = Alignment; _Alloc = std::allocator<Alignment>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<Alignment>::iterator' {aka '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from last-pair-probs.cc:9:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >; _Compare = __gnu_cxx::__ops::_Val_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
1820 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__move_merge_adaptive_backward(_BidirectionalIterator1, _BidirectionalIterator1, _BidirectionalIterator2, _BidirectionalIterator2, _BidirectionalIterator3, _Compare) [with _BidirectionalIterator1 = __gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >; _BidirectionalIterator2 = Alignment*; _BidirectionalIterator3 = __gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:2329:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2329 | __move_merge_adaptive_backward(_BidirectionalIterator1 __first1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2329:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:2329:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:2329:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h: In function '_RandomAccessIterator std::_V2::__rotate(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, std::random_access_iterator_tag) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >]':
/usr/include/c++/9/bits/stl_algo.h:1328:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
1328 | __rotate(_RandomAccessIterator __first,
| ^~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1328:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1328:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__merge_without_buffer(_BidirectionalIterator, _BidirectionalIterator, _BidirectionalIterator, _Distance, _Distance, _Compare) [with _BidirectionalIterator = __gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >; _Distance = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:2471:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2471 | __merge_without_buffer(_BidirectionalIterator __first,
| ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2471:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:2471:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1443:27: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
1443 | return std::__rotate(__first, __middle, __last,
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
1444 | std::__iterator_category(__first));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2512:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2512 | std::__merge_without_buffer(__first, __first_cut, __new_middle,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2513 | __len11, __len22, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2514:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2514 | std::__merge_without_buffer(__new_middle, __second_cut, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2515 | __len1 - __len11, __len2 - __len22, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__inplace_stable_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:2755:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2755 | __inplace_stable_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2755:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2760 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2764:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2764 | std::__inplace_stable_sort(__first, __middle, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2765:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2765 | std::__inplace_stable_sort(__middle, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2766 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2767 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2768 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2769 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__merge_adaptive(_BidirectionalIterator, _BidirectionalIterator, _BidirectionalIterator, _Distance, _Distance, _Pointer, _Distance, _Compare) [with _BidirectionalIterator = __gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >; _Distance = int; _Pointer = Alignment*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:2410:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2410 | __merge_adaptive(_BidirectionalIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2410:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:2410:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:2426:39: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2426 | std::__move_merge_adaptive_backward(__first, __middle, __buffer,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2427 | __buffer_end, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2426:39: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1443:27: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
1443 | return std::__rotate(__first, __middle, __last,
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
1444 | std::__iterator_category(__first));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2458:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2458 | std::__merge_adaptive(__first, __first_cut, __new_middle, __len11,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2459 | __len22, __buffer, __buffer_size, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2460:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2460 | std::__merge_adaptive(__new_middle, __second_cut, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2461 | __len1 - __len11,
| ~~~~~~~~~~~~~~~~~
2462 | __len2 - __len22, __buffer,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~
2463 | __buffer_size, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function '_OutputIterator std::__move_merge(_InputIterator, _InputIterator, _InputIterator, _InputIterator, _OutputIterator, _Compare) [with _InputIterator = __gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >; _OutputIterator = Alignment*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:2633:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2633 | __move_merge(_InputIterator __first1, _InputIterator __last1,
| ^~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2633:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:2633:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:2633:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:2633:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:2633:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h: In function '_OutputIterator std::__move_merge(_InputIterator, _InputIterator, _InputIterator, _InputIterator, _OutputIterator, _Compare) [with _InputIterator = Alignment*; _OutputIterator = __gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:2633:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__merge_sort_with_buffer(_RandomAccessIterator, _RandomAccessIterator, _Pointer, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >; _Pointer = Alignment*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:2699:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2699 | __merge_sort_with_buffer(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2699:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:2689:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2689 | std::__insertion_sort(__first, __first + __chunk_size, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2692:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2692 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2668:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2668 | __result = std::__move_merge(__first, __first + __step_size,
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2669 | __first + __step_size,
| ~~~~~~~~~~~~~~~~~~~~~~
2670 | __first + __two_step,
| ~~~~~~~~~~~~~~~~~~~~~
2671 | __result, __comp);
| ~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2668:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:2676:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2676 | std::__move_merge(__first, __first + __step_size,
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2677 | __first + __step_size, __last, __result, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2676:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:2668:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2668 | __result = std::__move_merge(__first, __first + __step_size,
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2669 | __first + __step_size,
| ~~~~~~~~~~~~~~~~~~~~~~
2670 | __first + __two_step,
| ~~~~~~~~~~~~~~~~~~~~~
2671 | __result, __comp);
| ~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2676:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2676 | std::__move_merge(__first, __first + __step_size,
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2677 | __first + __step_size, __last, __result, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2676:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:2692:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2692 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__stable_sort_adaptive(_RandomAccessIterator, _RandomAccessIterator, _Pointer, _Distance, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >; _Pointer = Alignment*; _Distance = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:2726:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2726 | __stable_sort_adaptive(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2726:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:2726:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:2735:31: note: parameter passing for argument of type 'const __gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2735 | std::__stable_sort_adaptive(__first, __middle, __buffer,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2736 | __buffer_size, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2737:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2737 | std::__stable_sort_adaptive(__middle, __last, __buffer,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
2738 | __buffer_size, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2742:33: note: parameter passing for argument of type 'const __gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2742 | std::__merge_sort_with_buffer(__first, __middle, __buffer, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2743:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2743 | std::__merge_sort_with_buffer(__middle, __last, __buffer, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2745:28: note: parameter passing for argument of type 'const __gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2745 | std::__merge_adaptive(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2746 | _Distance(__middle - __first),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2747 | _Distance(__last - __middle),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2748 | __buffer, __buffer_size,
| ~~~~~~~~~~~~~~~~~~~~~~~~
2749 | __comp);
| ~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from last-pair-probs.hh:28,
from last-pair-probs.cc:4:
/usr/include/c++/9/bits/vector.tcc: In function 'bool readBatch(std::istream&, char, double, const std::set<std::__cxx11::basic_string<char> >&, std::vector<char>&, std::vector<const char*>&, std::vector<Alignment>&)':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from last-pair-probs.cc:9:
/usr/include/c++/9/bits/stl_algo.h:5039:29: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
5039 | std::__stable_sort_adaptive(__first, __last, __buf.begin(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
5040 | _DistanceType(__buf.size()), __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2760 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2760 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2760 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2760 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2760 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2764:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2764 | std::__inplace_stable_sort(__first, __middle, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2765:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2765 | std::__inplace_stable_sort(__middle, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2766 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2767 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2768 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2769 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2760 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2764:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2764 | std::__inplace_stable_sort(__first, __middle, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2765:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2765 | std::__inplace_stable_sort(__middle, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2766 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2767 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2768 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2769 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2766 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2767 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2768 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2769 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2760 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2760 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2764:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2764 | std::__inplace_stable_sort(__first, __middle, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2765:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2765 | std::__inplace_stable_sort(__middle, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2766 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2767 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2768 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2769 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2760 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2764:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2764 | std::__inplace_stable_sort(__first, __middle, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2765:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2765 | std::__inplace_stable_sort(__middle, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2766 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2767 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2768 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2769 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2766 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2767 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2768 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2769 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2766 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2767 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2768 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2769 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2760 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2760 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2760 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2764:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2764 | std::__inplace_stable_sort(__first, __middle, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2765:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2765 | std::__inplace_stable_sort(__middle, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2766 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2767 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2768 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2769 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2760 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2764:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2764 | std::__inplace_stable_sort(__first, __middle, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2765:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2765 | std::__inplace_stable_sort(__middle, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2766 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2767 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2768 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2769 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2766 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2767 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2768 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2769 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2760 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2760 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2764:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2764 | std::__inplace_stable_sort(__first, __middle, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2765:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2765 | std::__inplace_stable_sort(__middle, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2766 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2767 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2768 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2769 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2760 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2764:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2764 | std::__inplace_stable_sort(__first, __middle, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2765:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2765 | std::__inplace_stable_sort(__middle, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2766 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2767 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2768 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2769 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2766 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2767 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2768 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2769 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2766 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2767 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2768 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2769 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2766 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2767 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2768 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2769 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2760 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2760 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2760 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2760 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2764:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2764 | std::__inplace_stable_sort(__first, __middle, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2765:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2765 | std::__inplace_stable_sort(__middle, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2766 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2767 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2768 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2769 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2760 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2764:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2764 | std::__inplace_stable_sort(__first, __middle, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2765:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2765 | std::__inplace_stable_sort(__middle, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2766 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2767 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2768 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2769 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2766 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2767 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2768 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2769 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2760 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2760 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2764:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2764 | std::__inplace_stable_sort(__first, __middle, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2765:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2765 | std::__inplace_stable_sort(__middle, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2766 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2767 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2768 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2769 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2760 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2764:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2764 | std::__inplace_stable_sort(__first, __middle, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2765:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2765 | std::__inplace_stable_sort(__middle, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2766 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2767 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2768 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2769 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2766 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2767 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2768 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2769 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2766 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2767 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2768 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2769 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2760 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2760 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2760 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2764:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2764 | std::__inplace_stable_sort(__first, __middle, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2765:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2765 | std::__inplace_stable_sort(__middle, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2766 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2767 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2768 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2769 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2760 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2764:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2764 | std::__inplace_stable_sort(__first, __middle, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2765:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2765 | std::__inplace_stable_sort(__middle, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2766 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2767 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2768 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2769 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2766 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2767 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2768 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2769 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2760 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2760 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2764:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2764 | std::__inplace_stable_sort(__first, __middle, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2765:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2765 | std::__inplace_stable_sort(__middle, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2766 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2767 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2768 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2769 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2760 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2764:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2764 | std::__inplace_stable_sort(__first, __middle, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2765:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2765 | std::__inplace_stable_sort(__middle, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2766 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2767 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2768 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2769 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2766 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2767 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2768 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2769 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2766 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2767 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2768 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2769 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2766 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2767 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2768 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2769 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2766 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2767 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2768 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2769 | __comp);
| ~~~~~~~
g++ -DLAST_INT_TYPE=size_t -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o SubsetSuffixArray.o8 SubsetSuffixArray.cc
g++ -DLAST_INT_TYPE=size_t -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o SubsetSuffixArraySort.o8 SubsetSuffixArraySort.cc
g++ -DLAST_INT_TYPE=size_t -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o lastdb.o8 lastdb.cc
g++ -DLAST_INT_TYPE=size_t -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o Alignment.o8 Alignment.cc
g++ -DLAST_INT_TYPE=size_t -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o AlignmentPot.o8 AlignmentPot.cc
g++ -DLAST_INT_TYPE=size_t -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o AlignmentWrite.o8 AlignmentWrite.cc
g++ -DLAST_INT_TYPE=size_t -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o Centroid.o8 Centroid.cc
g++ -DLAST_INT_TYPE=size_t -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o DiagonalTable.o8 DiagonalTable.cc
g++ -DLAST_INT_TYPE=size_t -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o SegmentPair.o8 SegmentPair.cc
g++ -DLAST_INT_TYPE=size_t -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o SegmentPairPot.o8 SegmentPairPot.cc
g++ -DLAST_INT_TYPE=size_t -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o SubsetSuffixArraySearch.o8 SubsetSuffixArraySearch.cc
g++ -DLAST_INT_TYPE=size_t -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o lastal.o8 lastal.cc
g++ -DLAST_INT_TYPE=size_t -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o split/cbrc_split_aligner.o8 split/cbrc_split_aligner.cc
g++ -DLAST_INT_TYPE=size_t -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o split/last-split.o8 split/last-split.cc
split/cbrc_split_aligner.cc: In member function 'void cbrc::SplitAligner::initSpliceSignals(unsigned int)':
split/cbrc_split_aligner.cc:853:14: warning: comparison of integer expressions of different signedness: 'const unsigned int' and 'int' [-Wsign-compare]
853 | if (a.rend > chromEnd - chromBeg)
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -I. -c -o LastdbArguments.o LastdbArguments.cc
In file included from /usr/include/c++/9/vector:72,
from split/cbrc_unsplit_alignment.hh:12,
from split/cbrc_split_aligner.hh:7,
from split/cbrc_split_aligner.cc:4:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from split/cbrc_unsplit_alignment.hh:12,
from split/cbrc_split_aligner.hh:7,
from split/cbrc_split_aligner.cc:4:
/usr/include/c++/9/bits/stl_vector.h: In member function 'std::vector<double> cbrc::SplitAligner::marginalProbs(unsigned int, unsigned int, unsigned int, unsigned int) const':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -Wl,-z,relro -Wl,-z,now -pthread -o lastal Alphabet.o CyclicSubsetSeed.o LambdaCalculator.o ScoreMatrix.o SubsetMinimizerFinder.o TantanMasker.o fileMap.o tantan.o LastalArguments.o GappedXdropAligner.o GappedXdropAlignerDna.o GappedXdropAlignerPssm.o GappedXdropAligner2qual.o GappedXdropAligner3frame.o mcf_gap_costs.o GeneticCode.o GreedyXdropAligner.o LastEvaluer.o OneQualityScoreMatrix.o QualityPssmMaker.o TwoQualityScoreMatrix.o gaplessXdrop.o gaplessPssmXdrop.o gaplessTwoQualityXdrop.o cbrc_linalg.o mcf_substitution_matrix_stats.o alp/sls_alignment_evaluer.o alp/sls_pvalues.o alp/sls_alp_sim.o alp/sls_alp_regression.o alp/sls_alp_data.o alp/sls_alp.o alp/sls_basic.o alp/njn_localmaxstatmatrix.o alp/njn_localmaxstat.o alp/njn_localmaxstatutil.o alp/njn_dynprogprob.o alp/njn_dynprogprobproto.o alp/njn_dynprogproblim.o alp/njn_ioutil.o alp/njn_random.o alp/sls_falp_alignment_evaluer.o alp/sls_fsa1_pvalues.o alp/sls_fsa1_utils.o alp/sls_fsa1.o alp/sls_fsa1_parameters.o Alignment.o AlignmentPot.o AlignmentWrite.o Centroid.o DiagonalTable.o MultiSequence.o MultiSequenceQual.o SegmentPair.o SegmentPairPot.o SubsetSuffixArray.o SubsetSuffixArraySearch.o lastal.o -lz
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -Wl,-z,relro -Wl,-z,now -pthread -o last-split Alphabet.o LambdaCalculator.o fileMap.o cbrc_linalg.o mcf_substitution_matrix_stats.o split/cbrc_unsplit_alignment.o split/last-split-main.o MultiSequence.o split/cbrc_split_aligner.o split/last-split.o
cc -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -pthread -o last-merge-batches last-merge-batches.o
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -Wl,-z,relro -Wl,-z,now -pthread -o last-pair-probs last-pair-probs.o last-pair-probs-main.o -lz
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -Wl,-z,relro -Wl,-z,now -pthread -o lastdb8 Alphabet.o CyclicSubsetSeed.o LambdaCalculator.o ScoreMatrix.o SubsetMinimizerFinder.o TantanMasker.o fileMap.o cbrc_linalg.o mcf_substitution_matrix_stats.o tantan.o LastdbArguments.o MultiSequence.o8 MultiSequenceQual.o8 SubsetSuffixArray.o8 SubsetSuffixArraySort.o8 lastdb.o8 -lz
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -Wl,-z,relro -Wl,-z,now -pthread -o lastdb Alphabet.o CyclicSubsetSeed.o LambdaCalculator.o ScoreMatrix.o SubsetMinimizerFinder.o TantanMasker.o fileMap.o cbrc_linalg.o mcf_substitution_matrix_stats.o tantan.o LastdbArguments.o MultiSequence.o MultiSequenceQual.o SubsetSuffixArray.o SubsetSuffixArraySort.o lastdb.o -lz
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -Wl,-z,relro -Wl,-z,now -pthread -o last-split8 Alphabet.o LambdaCalculator.o fileMap.o cbrc_linalg.o mcf_substitution_matrix_stats.o split/cbrc_unsplit_alignment.o split/last-split-main.o MultiSequence.o8 split/cbrc_split_aligner.o8 split/last-split.o8
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -O3 -std=c++11 -pthread -DHAS_CXX_THREADS -Wl,-z,relro -Wl,-z,now -pthread -o lastal8 Alphabet.o CyclicSubsetSeed.o LambdaCalculator.o ScoreMatrix.o SubsetMinimizerFinder.o TantanMasker.o fileMap.o tantan.o LastalArguments.o GappedXdropAligner.o GappedXdropAlignerDna.o GappedXdropAlignerPssm.o GappedXdropAligner2qual.o GappedXdropAligner3frame.o mcf_gap_costs.o GeneticCode.o GreedyXdropAligner.o LastEvaluer.o OneQualityScoreMatrix.o QualityPssmMaker.o TwoQualityScoreMatrix.o gaplessXdrop.o gaplessPssmXdrop.o gaplessTwoQualityXdrop.o cbrc_linalg.o mcf_substitution_matrix_stats.o alp/sls_alignment_evaluer.o alp/sls_pvalues.o alp/sls_alp_sim.o alp/sls_alp_regression.o alp/sls_alp_data.o alp/sls_alp.o alp/sls_basic.o alp/njn_localmaxstatmatrix.o alp/njn_localmaxstat.o alp/njn_localmaxstatutil.o alp/njn_dynprogprob.o alp/njn_dynprogprobproto.o alp/njn_dynprogproblim.o alp/njn_ioutil.o alp/njn_random.o alp/sls_falp_alignment_evaluer.o alp/sls_fsa1_pvalues.o alp/sls_fsa1_utils.o alp/sls_fsa1.o alp/sls_fsa1_parameters.o Alignment.o8 AlignmentPot.o8 AlignmentWrite.o8 Centroid.o8 DiagonalTable.o8 MultiSequence.o8 MultiSequenceQual.o8 SegmentPair.o8 SegmentPairPot.o8 SubsetSuffixArray.o8 SubsetSuffixArraySearch.o8 lastal.o8 -lz
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src'
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help2man --no-info --version-string="1061" \
--name='make a dotplot, a.k.a. Oxford Grid, of alignments in LAST tabular format' \
/<<PKGBUILDDIR>>/scripts/last-dotplot > /<<PKGBUILDDIR>>/debian/last-align/usr/share/man/man1/last-dotplot.1
help2man --no-info --version-string="1061" \
--name="genome-scale comparison of biological sequences" \
--help-option="-h" \
/<<PKGBUILDDIR>>/debian/last-align/usr/bin/lastal > /<<PKGBUILDDIR>>/debian/last-align/usr/share/man/man1/lastal.1
help2man --no-info --version-string="1061" \
--name="genome-scale comparison of biological sequences" \
--help-option="-h" \
/<<PKGBUILDDIR>>/debian/last-align/usr/bin/lastal8 > /<<PKGBUILDDIR>>/debian/last-align/usr/share/man/man1/lastal8.1
#help2man --no-info --version-string="1061" \
# --name="genome-scale comparison of biological sequences" \
# --help-option="-h" \
# /<<PKGBUILDDIR>>/debian/last-align/usr/bin/lastdb > /<<PKGBUILDDIR>>/debian/last-align/usr/share/man/man1/lastdb.1
help2man --no-info --version-string="1061" \
--name="Sort MAF-format alignments by sequence name" \
/<<PKGBUILDDIR>>/scripts/maf-sort > /<<PKGBUILDDIR>>/debian/last-align/usr/share/man/man1/maf-sort.1
help2man --no-info --version-string="1061" \
--name="changes the order of the sequences in MAF-format alignments" \
/<<PKGBUILDDIR>>/scripts/maf-swap > /<<PKGBUILDDIR>>/debian/last-align/usr/share/man/man1/maf-swap.1
#help2man --no-info --version-string="1061" \
# --name="Add extra column with mapping probabilities" \
# /<<PKGBUILDDIR>>/scripts/last-map-probs > /<<PKGBUILDDIR>>/debian/last-align/usr/share/man/man1/last-map-probs.1
# This script has not enough to put in a manual page.
#help2man --no-info --version-string="1061" \
# --name="Read files of lastal output, merge corresponding batches, and write them." \
# /<<PKGBUILDDIR>>/scripts/last-merge-batches > /<<PKGBUILDDIR>>/debian/last-align/usr/share/man/man1/last-merge-batches.1
#help2man --no-info --version-string="1061" \
# --name="Clean up MAF-format alignments" \
# /<<PKGBUILDDIR>>/scripts/last-reduce-alignments > /<<PKGBUILDDIR>>/debian/last-align/usr/share/man/man1/last-reduce-alignments.1
#help2man --no-info --version-string="1061" \
# --name='Remove MAF-format alignments which are "dominated" by others' \
# /<<PKGBUILDDIR>>/scripts/last-remove-dominated > /<<PKGBUILDDIR>>/debian/last-align/usr/share/man/man1/last-remove-dominated.1
help2man --no-info --version-string="1061" \
--name='Estimates "split" or "spliced" alignments.' \
/<<PKGBUILDDIR>>/debian/last-align/usr/bin/last-split > /<<PKGBUILDDIR>>/debian/last-align/usr/share/man/man1/last-split.1
help2man --no-info --version-string="1061" \
--name='Estimates "split" or "spliced" alignments.' \
/<<PKGBUILDDIR>>/debian/last-align/usr/bin/last-split8 > /<<PKGBUILDDIR>>/debian/last-align/usr/share/man/man1/last-split8.1
help2man --no-info --version-string="1061" \
--name="Join two or more sets of MAF-format multiple alignments" \
/<<PKGBUILDDIR>>/scripts/maf-join > /<<PKGBUILDDIR>>/debian/last-align/usr/share/man/man1/maf-join.1
help2man --no-info --version-string="1061" \
--name="Convert MAF-format alignments to tabular format" \
/<<PKGBUILDDIR>>/scripts/maf-convert > /<<PKGBUILDDIR>>/debian/last-align/usr/share/man/man1/maf-convert.1
help2man --no-info --version-string="1061" \
--name="Read 2 fastq files, and write them interleaved" \
/<<PKGBUILDDIR>>/scripts/fastq-interleave > /<<PKGBUILDDIR>>/debian/last-align/usr/share/man/man1/fastq-interleave.1
help2man --no-info --version-string="1061" \
--name="Read files of lastal output, merge corresponding batches, and write them" \
/<<PKGBUILDDIR>>/debian/last-align/usr/bin/last-merge-batches > /<<PKGBUILDDIR>>/debian/last-align/usr/share/man/man1/last-merge-batches.1
#help2man --no-info --version-string="1061" \
# --name="Read alignments of paired DNA reads to a genome, and do estimations" \
# /<<PKGBUILDDIR>>/debian/last-align/usr/bin/last-pair-probs > /<<PKGBUILDDIR>>/debian/last-align/usr/share/man/man1/last-pair-probs.1
help2man --no-info --version-string="1061" \
--name="Get alignments that have a segment with score >= threshold, with gentle masking of lowercase letters" \
/<<PKGBUILDDIR>>/scripts/last-postmask > /<<PKGBUILDDIR>>/debian/last-align/usr/share/man/man1/last-postmask.1
help2man --no-info --version-string="1061" \
--name="Try to find suitable score parameters for aligning the given sequences" \
/<<PKGBUILDDIR>>/scripts/last-train > /<<PKGBUILDDIR>>/debian/last-align/usr/share/man/man1/last-train.1
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
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dpkg-shlibdeps: warning: debian/last-align/usr/bin/lastdb contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
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dpkg-shlibdeps: warning: debian/last-align/usr/bin/last-split8 contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
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dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/last-align/usr/bin/last-merge-batches debian/last-align/usr/bin/lastdb debian/last-align/usr/bin/lastal debian/last-align/usr/bin/last-split debian/last-align/usr/bin/lastal8 debian/last-align/usr/bin/last-split8 debian/last-align/usr/bin/lastdb8 debian/last-align/usr/bin/last-pair-probs were not linked against ld-linux-armhf.so.3 (they use none of the library's symbols)
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dpkg-deb: building package 'last-align-dbgsym' in '../last-align-dbgsym_1061-1_armhf.deb'.
dpkg-deb: building package 'last-align' in '../last-align_1061-1_armhf.deb'.
dpkg-genbuildinfo --build=any
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dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
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--------------------------------------------------------------------------------
Build finished at 2020-05-12T06:04:56Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
last-align_1061-1_armhf.changes:
--------------------------------
Format: 1.8
Date: Sun, 10 May 2020 13:57:46 +0200
Source: last-align
Binary: last-align last-align-dbgsym
Architecture: armhf
Version: 1061-1
Distribution: bullseye-staging
Urgency: medium
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Michael R. Crusoe <michael.crusoe@gmail.com>
Description:
last-align - genome-scale comparison of biological sequences
Changes:
last-align (1061-1) unstable; urgency=medium
.
* Team upload.
* New upstream version
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915f13eb180d6d4eb3af0aa4086cb6b4 632028 science optional last-align_1061-1_armhf.deb
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last-align-dbgsym_1061-1_armhf.deb
----------------------------------
new Debian package, version 2.0.
size 8439344 bytes: control archive=960 bytes.
669 bytes, 12 lines control
938 bytes, 9 lines md5sums
Package: last-align-dbgsym
Source: last-align
Version: 1061-1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 10396
Depends: last-align (= 1061-1)
Section: debug
Priority: optional
Description: debug symbols for last-align
Build-Ids: 368ea98a23987f771a7db2e7a3018b28966f92c1 58a7c03cd3afb18de909df1200f7c5f3549cdc53 6eeb9990f9821b8e541fe5617c2b583d637d5f68 7937bc434d138a101527926ddf3dd6e3f8812f08 9aa0d37de502bdfb40a19bcac2b78baa751d4b57 dad439bc95df1e14e63d8ef22ecd3f8a7f1b8929 e908805861193ec2b26ee6b0a785a638f364d11f feef0e65b35dc5e0f67fe369a78bab7330c6e4fe
drwxr-xr-x root/root 0 2020-05-10 11:57 ./
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drwxr-xr-x root/root 0 2020-05-10 11:57 ./usr/lib/
drwxr-xr-x root/root 0 2020-05-10 11:57 ./usr/lib/debug/
drwxr-xr-x root/root 0 2020-05-10 11:57 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2020-05-10 11:57 ./usr/lib/debug/.build-id/36/
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drwxr-xr-x root/root 0 2020-05-10 11:57 ./usr/lib/debug/.dwz/
drwxr-xr-x root/root 0 2020-05-10 11:57 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/
-rw-r--r-- root/root 1011548 2020-05-10 11:57 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/last-align.debug
drwxr-xr-x root/root 0 2020-05-10 11:57 ./usr/share/
drwxr-xr-x root/root 0 2020-05-10 11:57 ./usr/share/doc/
lrwxrwxrwx root/root 0 2020-05-10 11:57 ./usr/share/doc/last-align-dbgsym -> last-align
last-align_1061-1_armhf.deb
---------------------------
new Debian package, version 2.0.
size 632028 bytes: control archive=3592 bytes.
1228 bytes, 25 lines control
7299 bytes, 103 lines md5sums
Package: last-align
Version: 1061-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 3300
Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.5), libstdc++6 (>= 6), zlib1g (>= 1:1.1.4), parallel
Recommends: python3, python3-pil
Built-Using: simde (= 0.0.0.git.20200424-1)
Section: science
Priority: optional
Homepage: http://last.cbrc.jp/
Description: genome-scale comparison of biological sequences
LAST is software for comparing and aligning sequences, typically DNA or
protein sequences. LAST is similar to BLAST, but it copes better with very
large amounts of sequence data. Here are two things LAST is good at:
.
* Comparing large (e.g. mammalian) genomes.
* Mapping lots of sequence tags onto a genome.
.
The main technical innovation is that LAST finds initial matches based on
their multiplicity, instead of using a fixed size (e.g. BLAST uses 10-mers).
This allows one to map tags to genomes without repeat-masking, without becoming
overwhelmed by repetitive hits. To find these variable-sized matches, it uses
a suffix array (inspired by Vmatch). To achieve high sensitivity, it uses a
discontiguous suffix array, analogous to spaced seeds.
drwxr-xr-x root/root 0 2020-05-10 11:57 ./
drwxr-xr-x root/root 0 2020-05-10 11:57 ./usr/
drwxr-xr-x root/root 0 2020-05-10 11:57 ./usr/bin/
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-rwxr-xr-x root/root 2027 2020-05-10 11:57 ./usr/bin/maf-sort
-rwxr-xr-x root/root 4947 2020-05-10 11:57 ./usr/bin/maf-swap
-rwxr-xr-x root/root 234 2020-05-10 11:57 ./usr/bin/parallel-fasta
-rwxr-xr-x root/root 295 2020-05-10 11:57 ./usr/bin/parallel-fastq
drwxr-xr-x root/root 0 2020-05-10 11:57 ./usr/share/
drwxr-xr-x root/root 0 2020-05-10 11:57 ./usr/share/doc-base/
-rw-r--r-- root/root 281 2019-12-23 03:11 ./usr/share/doc-base/last-align-manual
-rw-r--r-- root/root 291 2019-12-23 03:11 ./usr/share/doc-base/last-align-scripts
-rw-r--r-- root/root 295 2019-12-23 03:11 ./usr/share/doc-base/last-align-seeds
drwxr-xr-x root/root 0 2020-05-10 11:57 ./usr/share/doc/
drwxr-xr-x root/root 0 2020-05-10 11:57 ./usr/share/doc/last-align/
-rw-r--r-- root/root 12338 2018-12-26 07:28 ./usr/share/doc/last-align/FAQ.html
-rw-r--r-- root/root 2947 2015-12-16 10:25 ./usr/share/doc/last-align/FAQ.txt
-rw-r--r-- root/root 926 2018-12-26 07:28 ./usr/share/doc/last-align/Makefile
-rw-r--r-- root/root 201 2019-12-23 03:11 ./usr/share/doc/last-align/NEWS.Debian.gz
-rw-r--r-- root/root 179 2019-12-23 03:11 ./usr/share/doc/last-align/README.test
-rw-r--r-- root/root 10092 2018-12-26 07:28 ./usr/share/doc/last-align/bisulfite.html
-rw-r--r-- root/root 2719 2016-03-11 07:47 ./usr/share/doc/last-align/bisulfite.txt
-rw-r--r-- root/root 5812 2020-05-10 11:57 ./usr/share/doc/last-align/changelog.Debian.gz
-rw-r--r-- root/root 37612 2020-05-06 23:16 ./usr/share/doc/last-align/changelog.gz
-rw-r--r-- root/root 1119 2020-04-19 11:57 ./usr/share/doc/last-align/copyright
drwxr-xr-x root/root 0 2020-05-10 11:57 ./usr/share/doc/last-align/examples/
-rw-r--r-- root/root 17124 2013-05-23 00:23 ./usr/share/doc/last-align/examples/chickenMito.fa
-rw-r--r-- root/root 16786 2013-05-23 00:23 ./usr/share/doc/last-align/examples/fuguMito.fa
-rw-r--r-- root/root 16914 2013-05-23 00:23 ./usr/share/doc/last-align/examples/humanMito.fa
-rwxr-xr-x root/root 1488 2016-09-01 09:26 ./usr/share/doc/last-align/examples/last-bisulfite-paired.sh
-rwxr-xr-x root/root 907 2016-09-01 09:26 ./usr/share/doc/last-align/examples/last-bisulfite.sh
-rw-r--r-- root/root 16636 2013-05-23 00:23 ./usr/share/doc/last-align/examples/mouseMito.fa
-rw-r--r-- root/root 133732 2019-12-16 04:31 ./usr/share/doc/last-align/examples/multiMito.maf
-rwxr-xr-x root/root 964 2014-10-07 11:04 ./usr/share/doc/last-align/examples/multiMito.sh
-rw-r--r-- root/root 28889 2015-01-30 10:22 ./usr/share/doc/last-align/examples/myalns.maf
-rw-r--r-- root/root 712 2013-05-23 00:23 ./usr/share/doc/last-align/examples/titv212.mat
-rw-r--r-- root/root 408 2015-09-18 09:28 ./usr/share/doc/last-align/examples/ublast.seed
-rw-r--r-- root/root 539 2013-05-23 00:23 ./usr/share/doc/last-align/examples/vertebrateMito.gc
-rw-r--r-- root/root 260 2015-09-18 09:28 ./usr/share/doc/last-align/last-doc.css
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-rw-r--r-- root/root 12640 2019-10-09 10:31 ./usr/share/doc/last-align/last-evalues.html
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-rw-r--r-- root/root 12854 2018-12-26 07:28 ./usr/share/doc/last-align/last-papers.html
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-rw-r--r-- root/root 2373 2015-08-03 07:16 ./usr/share/doc/last-align/last-repeats.txt
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| Cleanup |
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Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
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| Summary |
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Build Architecture: armhf
Build-Space: 121360
Build-Time: 174
Distribution: bullseye-staging
Host Architecture: armhf
Install-Time: 296
Job: last-align_1061-1
Machine Architecture: armhf
Package: last-align
Package-Time: 490
Source-Version: 1061-1
Space: 121360
Status: successful
Version: 1061-1
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Finished at 2020-05-12T06:04:56Z
Build needed 00:08:10, 121360k disk space