last-align →
1060-1 →
armhf → 2020-03-27 19:22:45
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-02
+==============================================================================+
| last-align 1060-1 (armhf) Fri, 27 Mar 2020 19:13:25 +0000 |
+==============================================================================+
Package: last-align
Version: 1060-1
Source Version: 1060-1
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bullseye-staging-armhf-sbuild-973a698f-d822-4398-ac15-3040e98f86ae' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [11.6 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [12.8 MB]
Fetched 24.4 MB in 10s (2378 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'last-align' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/last-align.git
Please use:
git clone https://salsa.debian.org/med-team/last-align.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 481 kB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main last-align 1060-1 (dsc) [2070 B]
Get:2 http://172.17.0.1/private bullseye-staging/main last-align 1060-1 (tar) [413 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main last-align 1060-1 (diff) [66.0 kB]
Fetched 481 kB in 0s (1856 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/last-align-oBX8LX/last-align-1060' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/last-align-oBX8LX' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-86e8nh/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-86e8nh/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-86e8nh/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-86e8nh/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-86e8nh/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-86e8nh/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-86e8nh/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-86e8nh/apt_archive ./ Packages [434 B]
Fetched 2110 B in 0s (8463 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libpam-cap netbase
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-86e8nh/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (58.6 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12229 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 12), help2man, python3-pil, zlib1g-dev
Filtered Build-Depends: debhelper-compat (= 12), help2man, python3-pil, zlib1g-dev
dpkg-deb: building package 'sbuild-build-depends-last-align-dummy' in '/<<BUILDDIR>>/resolver-86e8nh/apt_archive/sbuild-build-depends-last-align-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-last-align-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-86e8nh/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-86e8nh/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-86e8nh/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-86e8nh/apt_archive ./ Sources [518 B]
Get:5 copy:/<<BUILDDIR>>/resolver-86e8nh/apt_archive ./ Packages [596 B]
Fetched 2447 B in 0s (9525 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install last-align build dependencies (apt-based resolver)
----------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libpam-cap netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
groff-base help2man intltool-debian libarchive-zip-perl libbsd0 libcroco3
libdebhelper-perl libelf1 libexpat1 libfile-stripnondeterminism-perl
libfreetype6 libglib2.0-0 libicu63 libimagequant0 libjbig0 libjpeg62-turbo
liblcms2-2 liblocale-gettext-perl libmagic-mgc libmagic1 libmpdec2
libpipeline1 libpng16-16 libpython3-stdlib libpython3.7-minimal
libpython3.7-stdlib libsigsegv2 libssl1.1 libsub-override-perl libtiff5
libtinfo5 libtool libuchardet0 libwebp6 libwebpdemux2 libwebpmux3 libxml2 m4
man-db mime-support po-debconf python3 python3-minimal python3-pil python3.7
python3.7-minimal sensible-utils zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff
liblcms2-utils libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc
apparmor less www-browser libmail-box-perl python3-doc python3-tk
python3-venv python-pil-doc python3-pil-dbg python3.7-venv python3.7-doc
binfmt-support
Recommended packages:
curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs libltdl-dev libmail-sendmail-perl python3-olefile
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
groff-base help2man intltool-debian libarchive-zip-perl libbsd0 libcroco3
libdebhelper-perl libelf1 libexpat1 libfile-stripnondeterminism-perl
libfreetype6 libglib2.0-0 libicu63 libimagequant0 libjbig0 libjpeg62-turbo
liblcms2-2 liblocale-gettext-perl libmagic-mgc libmagic1 libmpdec2
libpipeline1 libpng16-16 libpython3-stdlib libpython3.7-minimal
libpython3.7-stdlib libsigsegv2 libssl1.1 libsub-override-perl libtiff5
libtinfo5 libtool libuchardet0 libwebp6 libwebpdemux2 libwebpmux3 libxml2 m4
man-db mime-support po-debconf python3 python3-minimal python3-pil python3.7
python3.7-minimal sbuild-build-depends-last-align-dummy sensible-utils
zlib1g-dev
0 upgraded, 61 newly installed, 0 to remove and 0 not upgraded.
Need to get 26.7 MB of archives.
After this operation, 99.2 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-86e8nh/apt_archive ./ sbuild-build-depends-last-align-dummy 0.invalid.0 [888 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf liblocale-gettext-perl armhf 1.07-4 [18.1 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf libbsd0 armhf 0.10.0-1 [112 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf libtinfo5 armhf 6.2-1 [318 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-4 [783 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.2-2 [29.6 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.1-1 [1262 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf libssl1.1 armhf 1.1.1d-2 [1268 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf libpython3.7-minimal armhf 3.7.7-1 [585 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf libexpat1 armhf 2.2.9-1 [71.5 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf python3.7-minimal armhf 3.7.7-1 [1532 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf python3-minimal armhf 3.7.5-3 [36.8 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf mime-support all 3.64 [37.8 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf libmpdec2 armhf 2.4.2-3 [68.1 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf libpython3.7-stdlib armhf 3.7.7-1 [1670 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf python3.7 armhf 3.7.7-1 [354 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf libpython3-stdlib armhf 3.7.5-3 [20.2 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf python3 armhf 3.7.5-3 [62.1 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf sensible-utils all 0.0.12+nmu1 [16.0 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.38-4 [262 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.38-4 [112 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.38-4 [66.9 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-10 [117 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-4 [185 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11.1 [341 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.1-4 [771 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-10 [435 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-14 [513 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 12.9 [183 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.6.3-2 [23.7 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.6.3-2 [14.7 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.176-1.1 [158 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13-5 [142 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.64.1-1 [1157 kB]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf libicu63 armhf 63.2-3 [7987 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.10+dfsg-4 [592 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf libcroco3 armhf 0.6.13-1 [133 kB]
Get:45 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-10 [1219 kB]
Get:46 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:47 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:48 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 12.9 [994 kB]
Get:49 http://172.17.0.1/private bullseye-staging/main armhf help2man armhf 1.47.13 [180 kB]
Get:50 http://172.17.0.1/private bullseye-staging/main armhf libpng16-16 armhf 1.6.37-2 [274 kB]
Get:51 http://172.17.0.1/private bullseye-staging/main armhf libfreetype6 armhf 2.10.1-2 [330 kB]
Get:52 http://172.17.0.1/private bullseye-staging/main armhf libimagequant0 armhf 2.12.2-1.1 [27.2 kB]
Get:53 http://172.17.0.1/private bullseye-staging/main armhf libjbig0 armhf 2.1-3.1+b2 [27.6 kB]
Get:54 http://172.17.0.1/private bullseye-staging/main armhf libjpeg62-turbo armhf 1:1.5.2-2+b1 [110 kB]
Get:55 http://172.17.0.1/private bullseye-staging/main armhf liblcms2-2 armhf 2.9-4 [119 kB]
Get:56 http://172.17.0.1/private bullseye-staging/main armhf libwebp6 armhf 0.6.1-2 [228 kB]
Get:57 http://172.17.0.1/private bullseye-staging/main armhf libtiff5 armhf 4.1.0+git191117-2 [250 kB]
Get:58 http://172.17.0.1/private bullseye-staging/main armhf libwebpdemux2 armhf 0.6.1-2 [86.7 kB]
Get:59 http://172.17.0.1/private bullseye-staging/main armhf libwebpmux3 armhf 0.6.1-2 [94.2 kB]
Get:60 http://172.17.0.1/private bullseye-staging/main armhf python3-pil armhf 6.2.1-2+b1 [396 kB]
Get:61 http://172.17.0.1/private bullseye-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [184 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 26.7 MB in 6s (4239 kB/s)
Selecting previously unselected package liblocale-gettext-perl.
(Reading database ... 12229 files and directories currently installed.)
Preparing to unpack .../00-liblocale-gettext-perl_1.07-4_armhf.deb ...
Unpacking liblocale-gettext-perl (1.07-4) ...
Selecting previously unselected package libbsd0:armhf.
Preparing to unpack .../01-libbsd0_0.10.0-1_armhf.deb ...
Unpacking libbsd0:armhf (0.10.0-1) ...
Selecting previously unselected package libtinfo5:armhf.
Preparing to unpack .../02-libtinfo5_6.2-1_armhf.deb ...
Unpacking libtinfo5:armhf (6.2-1) ...
Selecting previously unselected package bsdmainutils.
Preparing to unpack .../03-bsdmainutils_11.1.2_armhf.deb ...
Unpacking bsdmainutils (11.1.2) ...
Selecting previously unselected package libuchardet0:armhf.
Preparing to unpack .../04-libuchardet0_0.0.6-3_armhf.deb ...
Unpacking libuchardet0:armhf (0.0.6-3) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../05-groff-base_1.22.4-4_armhf.deb ...
Unpacking groff-base (1.22.4-4) ...
Selecting previously unselected package libpipeline1:armhf.
Preparing to unpack .../06-libpipeline1_1.5.2-2_armhf.deb ...
Unpacking libpipeline1:armhf (1.5.2-2) ...
Selecting previously unselected package man-db.
Preparing to unpack .../07-man-db_2.9.1-1_armhf.deb ...
Unpacking man-db (2.9.1-1) ...
Selecting previously unselected package libssl1.1:armhf.
Preparing to unpack .../08-libssl1.1_1.1.1d-2_armhf.deb ...
Unpacking libssl1.1:armhf (1.1.1d-2) ...
Selecting previously unselected package libpython3.7-minimal:armhf.
Preparing to unpack .../09-libpython3.7-minimal_3.7.7-1_armhf.deb ...
Unpacking libpython3.7-minimal:armhf (3.7.7-1) ...
Selecting previously unselected package libexpat1:armhf.
Preparing to unpack .../10-libexpat1_2.2.9-1_armhf.deb ...
Unpacking libexpat1:armhf (2.2.9-1) ...
Selecting previously unselected package python3.7-minimal.
Preparing to unpack .../11-python3.7-minimal_3.7.7-1_armhf.deb ...
Unpacking python3.7-minimal (3.7.7-1) ...
Setting up libssl1.1:armhf (1.1.1d-2) ...
Setting up libpython3.7-minimal:armhf (3.7.7-1) ...
Setting up libexpat1:armhf (2.2.9-1) ...
Setting up python3.7-minimal (3.7.7-1) ...
Selecting previously unselected package python3-minimal.
(Reading database ... 13163 files and directories currently installed.)
Preparing to unpack .../0-python3-minimal_3.7.5-3_armhf.deb ...
Unpacking python3-minimal (3.7.5-3) ...
Selecting previously unselected package mime-support.
Preparing to unpack .../1-mime-support_3.64_all.deb ...
Unpacking mime-support (3.64) ...
Selecting previously unselected package libmpdec2:armhf.
Preparing to unpack .../2-libmpdec2_2.4.2-3_armhf.deb ...
Unpacking libmpdec2:armhf (2.4.2-3) ...
Selecting previously unselected package libpython3.7-stdlib:armhf.
Preparing to unpack .../3-libpython3.7-stdlib_3.7.7-1_armhf.deb ...
Unpacking libpython3.7-stdlib:armhf (3.7.7-1) ...
Selecting previously unselected package python3.7.
Preparing to unpack .../4-python3.7_3.7.7-1_armhf.deb ...
Unpacking python3.7 (3.7.7-1) ...
Selecting previously unselected package libpython3-stdlib:armhf.
Preparing to unpack .../5-libpython3-stdlib_3.7.5-3_armhf.deb ...
Unpacking libpython3-stdlib:armhf (3.7.5-3) ...
Setting up python3-minimal (3.7.5-3) ...
Selecting previously unselected package python3.
(Reading database ... 13601 files and directories currently installed.)
Preparing to unpack .../00-python3_3.7.5-3_armhf.deb ...
Unpacking python3 (3.7.5-3) ...
Selecting previously unselected package sensible-utils.
Preparing to unpack .../01-sensible-utils_0.0.12+nmu1_all.deb ...
Unpacking sensible-utils (0.0.12+nmu1) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../02-libmagic-mgc_1%3a5.38-4_armhf.deb ...
Unpacking libmagic-mgc (1:5.38-4) ...
Selecting previously unselected package libmagic1:armhf.
Preparing to unpack .../03-libmagic1_1%3a5.38-4_armhf.deb ...
Unpacking libmagic1:armhf (1:5.38-4) ...
Selecting previously unselected package file.
Preparing to unpack .../04-file_1%3a5.38-4_armhf.deb ...
Unpacking file (1:5.38-4) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../05-gettext-base_0.19.8.1-10_armhf.deb ...
Unpacking gettext-base (0.19.8.1-10) ...
Selecting previously unselected package libsigsegv2:armhf.
Preparing to unpack .../06-libsigsegv2_2.12-2_armhf.deb ...
Unpacking libsigsegv2:armhf (2.12-2) ...
Selecting previously unselected package m4.
Preparing to unpack .../07-m4_1.4.18-4_armhf.deb ...
Unpacking m4 (1.4.18-4) ...
Selecting previously unselected package autoconf.
Preparing to unpack .../08-autoconf_2.69-11.1_all.deb ...
Unpacking autoconf (2.69-11.1) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../09-autotools-dev_20180224.1_all.deb ...
Unpacking autotools-dev (20180224.1) ...
Selecting previously unselected package automake.
Preparing to unpack .../10-automake_1%3a1.16.1-4_all.deb ...
Unpacking automake (1:1.16.1-4) ...
Selecting previously unselected package autopoint.
Preparing to unpack .../11-autopoint_0.19.8.1-10_all.deb ...
Unpacking autopoint (0.19.8.1-10) ...
Selecting previously unselected package libtool.
Preparing to unpack .../12-libtool_2.4.6-14_all.deb ...
Unpacking libtool (2.4.6-14) ...
Selecting previously unselected package dh-autoreconf.
Preparing to unpack .../13-dh-autoreconf_19_all.deb ...
Unpacking dh-autoreconf (19) ...
Selecting previously unselected package libdebhelper-perl.
Preparing to unpack .../14-libdebhelper-perl_12.9_all.deb ...
Unpacking libdebhelper-perl (12.9) ...
Selecting previously unselected package libarchive-zip-perl.
Preparing to unpack .../15-libarchive-zip-perl_1.68-1_all.deb ...
Unpacking libarchive-zip-perl (1.68-1) ...
Selecting previously unselected package libsub-override-perl.
Preparing to unpack .../16-libsub-override-perl_0.09-2_all.deb ...
Unpacking libsub-override-perl (0.09-2) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
Preparing to unpack .../17-libfile-stripnondeterminism-perl_1.6.3-2_all.deb ...
Unpacking libfile-stripnondeterminism-perl (1.6.3-2) ...
Selecting previously unselected package dh-strip-nondeterminism.
Preparing to unpack .../18-dh-strip-nondeterminism_1.6.3-2_all.deb ...
Unpacking dh-strip-nondeterminism (1.6.3-2) ...
Selecting previously unselected package libelf1:armhf.
Preparing to unpack .../19-libelf1_0.176-1.1_armhf.deb ...
Unpacking libelf1:armhf (0.176-1.1) ...
Selecting previously unselected package dwz.
Preparing to unpack .../20-dwz_0.13-5_armhf.deb ...
Unpacking dwz (0.13-5) ...
Selecting previously unselected package libglib2.0-0:armhf.
Preparing to unpack .../21-libglib2.0-0_2.64.1-1_armhf.deb ...
Unpacking libglib2.0-0:armhf (2.64.1-1) ...
Selecting previously unselected package libicu63:armhf.
Preparing to unpack .../22-libicu63_63.2-3_armhf.deb ...
Unpacking libicu63:armhf (63.2-3) ...
Selecting previously unselected package libxml2:armhf.
Preparing to unpack .../23-libxml2_2.9.10+dfsg-4_armhf.deb ...
Unpacking libxml2:armhf (2.9.10+dfsg-4) ...
Selecting previously unselected package libcroco3:armhf.
Preparing to unpack .../24-libcroco3_0.6.13-1_armhf.deb ...
Unpacking libcroco3:armhf (0.6.13-1) ...
Selecting previously unselected package gettext.
Preparing to unpack .../25-gettext_0.19.8.1-10_armhf.deb ...
Unpacking gettext (0.19.8.1-10) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../26-intltool-debian_0.35.0+20060710.5_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.5) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../27-po-debconf_1.0.21_all.deb ...
Unpacking po-debconf (1.0.21) ...
Selecting previously unselected package debhelper.
Preparing to unpack .../28-debhelper_12.9_all.deb ...
Unpacking debhelper (12.9) ...
Selecting previously unselected package help2man.
Preparing to unpack .../29-help2man_1.47.13_armhf.deb ...
Unpacking help2man (1.47.13) ...
Selecting previously unselected package libpng16-16:armhf.
Preparing to unpack .../30-libpng16-16_1.6.37-2_armhf.deb ...
Unpacking libpng16-16:armhf (1.6.37-2) ...
Selecting previously unselected package libfreetype6:armhf.
Preparing to unpack .../31-libfreetype6_2.10.1-2_armhf.deb ...
Unpacking libfreetype6:armhf (2.10.1-2) ...
Selecting previously unselected package libimagequant0:armhf.
Preparing to unpack .../32-libimagequant0_2.12.2-1.1_armhf.deb ...
Unpacking libimagequant0:armhf (2.12.2-1.1) ...
Selecting previously unselected package libjbig0:armhf.
Preparing to unpack .../33-libjbig0_2.1-3.1+b2_armhf.deb ...
Unpacking libjbig0:armhf (2.1-3.1+b2) ...
Selecting previously unselected package libjpeg62-turbo:armhf.
Preparing to unpack .../34-libjpeg62-turbo_1%3a1.5.2-2+b1_armhf.deb ...
Unpacking libjpeg62-turbo:armhf (1:1.5.2-2+b1) ...
Selecting previously unselected package liblcms2-2:armhf.
Preparing to unpack .../35-liblcms2-2_2.9-4_armhf.deb ...
Unpacking liblcms2-2:armhf (2.9-4) ...
Selecting previously unselected package libwebp6:armhf.
Preparing to unpack .../36-libwebp6_0.6.1-2_armhf.deb ...
Unpacking libwebp6:armhf (0.6.1-2) ...
Selecting previously unselected package libtiff5:armhf.
Preparing to unpack .../37-libtiff5_4.1.0+git191117-2_armhf.deb ...
Unpacking libtiff5:armhf (4.1.0+git191117-2) ...
Selecting previously unselected package libwebpdemux2:armhf.
Preparing to unpack .../38-libwebpdemux2_0.6.1-2_armhf.deb ...
Unpacking libwebpdemux2:armhf (0.6.1-2) ...
Selecting previously unselected package libwebpmux3:armhf.
Preparing to unpack .../39-libwebpmux3_0.6.1-2_armhf.deb ...
Unpacking libwebpmux3:armhf (0.6.1-2) ...
Selecting previously unselected package python3-pil:armhf.
Preparing to unpack .../40-python3-pil_6.2.1-2+b1_armhf.deb ...
Unpacking python3-pil:armhf (6.2.1-2+b1) ...
Selecting previously unselected package zlib1g-dev:armhf.
Preparing to unpack .../41-zlib1g-dev_1%3a1.2.11.dfsg-2_armhf.deb ...
Unpacking zlib1g-dev:armhf (1:1.2.11.dfsg-2) ...
Selecting previously unselected package sbuild-build-depends-last-align-dummy.
Preparing to unpack .../42-sbuild-build-depends-last-align-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-last-align-dummy (0.invalid.0) ...
Setting up libpipeline1:armhf (1.5.2-2) ...
Setting up liblcms2-2:armhf (2.9-4) ...
Setting up mime-support (3.64) ...
Setting up libmagic-mgc (1:5.38-4) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libglib2.0-0:armhf (2.64.1-1) ...
No schema files found: doing nothing.
Setting up libdebhelper-perl (12.9) ...
Setting up libmagic1:armhf (1:5.38-4) ...
Setting up gettext-base (0.19.8.1-10) ...
Setting up file (1:5.38-4) ...
Setting up libjbig0:armhf (2.1-3.1+b2) ...
Setting up libicu63:armhf (63.2-3) ...
Setting up autotools-dev (20180224.1) ...
Setting up libjpeg62-turbo:armhf (1:1.5.2-2+b1) ...
Setting up libsigsegv2:armhf (2.12-2) ...
Setting up libimagequant0:armhf (2.12.2-1.1) ...
Setting up libpng16-16:armhf (1.6.37-2) ...
Setting up autopoint (0.19.8.1-10) ...
Setting up libwebp6:armhf (0.6.1-2) ...
Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-2) ...
Setting up sensible-utils (0.0.12+nmu1) ...
Setting up libuchardet0:armhf (0.0.6-3) ...
Setting up libsub-override-perl (0.09-2) ...
Setting up libtiff5:armhf (4.1.0+git191117-2) ...
Setting up libmpdec2:armhf (2.4.2-3) ...
Setting up libwebpmux3:armhf (0.6.1-2) ...
Setting up libbsd0:armhf (0.10.0-1) ...
Setting up libtinfo5:armhf (6.2-1) ...
Setting up libelf1:armhf (0.176-1.1) ...
Setting up libxml2:armhf (2.9.10+dfsg-4) ...
Setting up liblocale-gettext-perl (1.07-4) ...
Setting up libfile-stripnondeterminism-perl (1.6.3-2) ...
Setting up libpython3.7-stdlib:armhf (3.7.7-1) ...
Setting up libtool (2.4.6-14) ...
Setting up libwebpdemux2:armhf (0.6.1-2) ...
Setting up m4 (1.4.18-4) ...
Setting up help2man (1.47.13) ...
Setting up libfreetype6:armhf (2.10.1-2) ...
Setting up bsdmainutils (11.1.2) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up libcroco3:armhf (0.6.13-1) ...
Setting up autoconf (2.69-11.1) ...
Setting up dh-strip-nondeterminism (1.6.3-2) ...
Setting up dwz (0.13-5) ...
Setting up groff-base (1.22.4-4) ...
Setting up libpython3-stdlib:armhf (3.7.5-3) ...
Setting up automake (1:1.16.1-4) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up python3.7 (3.7.7-1) ...
Setting up gettext (0.19.8.1-10) ...
Setting up python3 (3.7.5-3) ...
Setting up man-db (2.9.1-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up python3-pil:armhf (6.2.1-2+b1) ...
Setting up po-debconf (1.0.21) ...
Setting up dh-autoreconf (19) ...
Setting up debhelper (12.9) ...
Setting up sbuild-build-depends-last-align-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.30-2+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.15.0-76-generic armhf (armv8l)
Toolchain package versions: binutils_2.34-5+rpi1 dpkg-dev_1.19.7 g++-9_9.3.0-3+rpi1 gcc-9_9.3.0-3+rpi1 libc6-dev_2.30-2+rpi1 libstdc++-9-dev_9.3.0-3+rpi1 libstdc++6_10-20200312-2+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2
Package versions: adduser_3.118 apt_2.0.0+b1 autoconf_2.69-11.1 automake_1:1.16.1-4 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11+rpi1 base-passwd_3.5.47 bash_5.0-6 binutils_2.34-5+rpi1 binutils-arm-linux-gnueabihf_2.34-5+rpi1 binutils-common_2.34-5+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.34-0.1 build-essential_12.8 bzip2_1.0.8-2 coreutils_8.30-3 cpp_4:9.2.1-3.1+rpi1 cpp-9_9.3.0-3+rpi1 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.9 debianutils_4.9.1 dh-autoreconf_19 dh-strip-nondeterminism_1.6.3-2 diffutils_1:3.7-3 dirmngr_2.2.19-3 dpkg_1.19.7 dpkg-dev_1.19.7 dwz_0.13-5 e2fsprogs_1.45.6-1 fakeroot_1.24-1 fdisk_2.34-0.1 file_1:5.38-4 findutils_4.7.0-1 g++_4:9.2.1-3.1+rpi1 g++-9_9.3.0-3+rpi1 gcc_4:9.2.1-3.1+rpi1 gcc-10-base_10-20200312-2+rpi1 gcc-9_9.3.0-3+rpi1 gcc-9-base_9.3.0-3+rpi1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gnupg_2.2.19-3 gnupg-l10n_2.2.19-3 gnupg-utils_2.2.19-3 gpg_2.2.19-3 gpg-agent_2.2.19-3 gpg-wks-client_2.2.19-3 gpg-wks-server_2.2.19-3 gpgconf_2.2.19-3 gpgsm_2.2.19-3 gpgv_2.2.19-3 grep_3.4-1 groff-base_1.22.4-4 gzip_1.10-2 help2man_1.47.13 hostname_3.23 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 iputils-ping_3:20190709-3 libacl1_2.2.53-6 libapt-pkg6.0_2.0.0+b1 libarchive-zip-perl_1.68-1 libasan5_9.3.0-3+rpi1 libassuan0_2.5.3-7 libatomic1_10-20200312-2+rpi1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2 libaudit1_1:2.8.5-2+b1 libbinutils_2.34-5+rpi1 libblkid1_2.34-0.1 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.30-2+rpi1 libc-dev-bin_2.30-2+rpi1 libc6_2.30-2+rpi1 libc6-dev_2.30-2+rpi1 libcap-ng0_0.7.9-2.1 libcap2_1:2.32-1 libcap2-bin_1:2.32-1 libcc1-0_10-20200312-2+rpi1 libcom-err2_1.45.6-1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.15-1 libcrypt1_1:4.4.15-1 libctf-nobfd0_2.34-5+rpi1 libctf0_2.34-5+rpi1 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.251 libdebhelper-perl_12.9 libdpkg-perl_1.19.7 libelf1_0.176-1.1 libexpat1_2.2.9-1 libext2fs2_1.45.6-1 libfakeroot_1.24-1 libfdisk1_2.34-0.1 libffi7_3.3-3 libfile-stripnondeterminism-perl_1.6.3-2 libfreetype6_2.10.1-2 libgcc-9-dev_9.3.0-3+rpi1 libgcc-s1_10-20200312-2+rpi1 libgcc1_1:10-20200312-2+rpi1 libgcrypt20_1.8.5-5 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libglib2.0-0_2.64.1-1 libgmp10_2:6.2.0+dfsg-4 libgnutls30_3.6.12-2 libgomp1_10-20200312-2+rpi1 libgpg-error0_1.37-1 libhogweed5_3.5.1+really3.5.1-2 libicu63_63.2-3 libidn2-0_2.3.0-1 libimagequant0_2.12.2-1.1 libisl22_0.22.1-1 libjbig0_2.1-3.1+b2 libjpeg62-turbo_1:1.5.2-2+b1 libksba8_1.3.5-2 liblcms2-2_2.9-4 libldap-2.4-2_2.4.49+dfsg-2 libldap-common_2.4.49+dfsg-2 liblocale-gettext-perl_1.07-4 liblz4-1_1.9.2-2 liblzma5_5.2.4-1 libmagic-mgc_1:5.38-4 libmagic1_1:5.38-4 libmount1_2.34-0.1 libmpc3_1.1.0-1 libmpdec2_2.4.2-3 libmpfr6_4.0.2-1 libncursesw6_6.2-1 libnettle7_3.5.1+really3.5.1-2 libnpth0_1.6-1 libp11-kit0_0.23.20-1 libpam-cap_1:2.32-1 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.34-7 libpcre3_2:8.39-12 libperl5.30_5.30.0-9 libpipeline1_1.5.2-2 libpng16-16_1.6.37-2 libpython3-stdlib_3.7.5-3 libpython3.7-minimal_3.7.7-1 libpython3.7-stdlib_3.7.7-1 libreadline7_7.0-5 libreadline8_8.0-4 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.4.3-1+rpi1 libselinux1_3.0-1 libsemanage-common_3.0-1 libsemanage1_3.0-1 libsepol1_3.0-1 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1 libsqlite3-0_3.31.1-4 libss2_1.45.6-1 libssl1.1_1.1.1d-2 libstdc++-9-dev_9.3.0-3+rpi1 libstdc++6_10-20200312-2+rpi1 libsub-override-perl_0.09-2 libsystemd0_244.3-1+rpi1 libtasn1-6_4.16.0-2 libtiff5_4.1.0+git191117-2 libtinfo5_6.2-1 libtinfo6_6.2-1 libtool_2.4.6-14 libubsan1_10-20200312-2+rpi1 libuchardet0_0.0.6-3 libudev1_244.3-1+rpi1 libunistring2_0.9.10-2 libuuid1_2.34-0.1 libwebp6_0.6.1-2 libwebpdemux2_0.6.1-2 libwebpmux3_0.6.1-2 libxml2_2.9.10+dfsg-4 libzstd1_1.4.4+dfsg-3+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2 login_1:4.8.1-1 logsave_1.45.6-1 lsb-base_11.1.0+rpi1 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.1-1 mawk_1.3.4.20200120-2 mime-support_3.64 mount_2.34-0.1 ncurses-base_6.2-1 ncurses-bin_6.2-1 netbase_6.1 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.30.0-9 perl-base_5.30.0-9 perl-modules-5.30_5.30.0-9 pinentry-curses_1.1.0-3 po-debconf_1.0.21 python3_3.7.5-3 python3-minimal_3.7.5-3 python3-pil_6.2.1-2+b1 python3.7_3.7.7-1 python3.7-minimal_3.7.7-1 raspbian-archive-keyring_20120528.2 readline-common_8.0-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-last-align-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-3 tar_1.30+dfsg-7 tzdata_2019c-3 util-linux_2.34-0.1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Tue Mar 24 22:36:09 2020 UTC
gpgv: using RSA key 84C1977A89E7EFED3E5CA62E2FD8BEDAC020EED1
gpgv: issuer "moeller@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./last-align_1060-1.dsc
dpkg-source: info: extracting last-align in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking last-align_1060.orig.tar.xz
dpkg-source: info: unpacking last-align_1060-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying 2to3.patch
dpkg-source: info: applying helpMakefiles.patch
dpkg-source: info: applying simde
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-973a698f-d822-4398-ac15-3040e98f86ae
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package last-align
dpkg-buildpackage: info: source version 1060-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean
make -j4 clean
make[2]: Entering directory '/<<PKGBUILDDIR>>'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src'
rm -f lastdb lastal last-split last-merge-batches last-pair-probs lastdb8 lastal8 last-split8 *.o* */*.o*
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
for i in last-merge-batches last-pair-probs last-split last-split8 lastal lastal8 lastdb lastdb8; \
do \
for j in avx avx2 sse2 sse3 sse4.1 ssse3 ; \
do \
rm -f src/$i-$j ; \
done ; \
done
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_clean
debian/rules binary-arch
dh binary-arch
dh_update_autotools_config -a
dh_autoreconf -a
dh_auto_configure -a
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
/usr/bin/make -j4 all CXXFLAGS="-g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3" CFLAGS="-g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP" LDFLAGS="-Wl,-z,relro -Wl,-z,now -pthread"
make[2]: Entering directory '/<<PKGBUILDDIR>>'
make[2]: warning: -j4 forced in submake: resetting jobserver mode.
make[3]: Entering directory '/<<PKGBUILDDIR>>/src'
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o Alphabet.o Alphabet.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o CyclicSubsetSeed.o CyclicSubsetSeed.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o LambdaCalculator.o LambdaCalculator.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o ScoreMatrix.o ScoreMatrix.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o SubsetMinimizerFinder.o SubsetMinimizerFinder.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o TantanMasker.o TantanMasker.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o fileMap.o fileMap.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o cbrc_linalg.o cbrc_linalg.cc
In file included from /usr/include/c++/9/vector:72,
from ScoreMatrix.hh:15,
from ScoreMatrix.cc:3:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from ScoreMatrix.hh:15,
from ScoreMatrix.cc:3:
/usr/include/c++/9/bits/stl_vector.h: In function 'std::istream& cbrc::operator>>(std::istream&, cbrc::ScoreMatrix&)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o mcf_substitution_matrix_stats.o mcf_substitution_matrix_stats.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o tantan.o tantan.cc
if test -e ../.hg ; \
then echo \"`hg id -n`\" | cmp -s version.hh - || echo \"`hg id -n`\" > version.hh ; \
elif test -e ../.hg_archival.txt ; \
then echo \"`grep latesttagdistance ../.hg_archival.txt | cut -d' ' -f2`\" | cmp -s version.hh - || echo \"`grep latesttagdistance ../.hg_archival.txt | cut -d' ' -f2`\" > version.hh ; \
else test -e version.hh || echo \"UNKNOWN\" > version.hh ; \
fi
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o MultiSequence.o MultiSequence.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o MultiSequenceQual.o MultiSequenceQual.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o SubsetSuffixArray.o SubsetSuffixArray.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o SubsetSuffixArraySort.o SubsetSuffixArraySort.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o lastdb.o lastdb.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o LastalArguments.o LastalArguments.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o GappedXdropAligner.o GappedXdropAligner.cc
In file included from ../debian/include/simde/x86/../simde-common.h:27,
from ../debian/include/simde/x86/mmx.h:28,
from ../debian/include/simde/x86/sse.h:32,
from ../debian/include/simde/x86/sse2.h:34,
from ../debian/include/simde/x86/sse3.h:28,
from ../debian/include/simde/x86/ssse3.h:28,
from ../debian/include/simde/x86/sse4.1.h:28,
from ../debian/include/simde/x86/avx2.h:26,
from mcf_simd.hh:7,
from GappedXdropAligner.hh:50,
from GappedXdropAligner.cc:49:
../debian/include/simde/x86/avx.h: In function 'simde__m256d simde_mm256_load_pd(const double*)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'const double*' to 'const simde__m256d*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:2992:8: note: in expansion of macro 'SIMDE_CAST_ALIGN'
2992 | r = *SIMDE_CAST_ALIGN(32, simde__m256d const*, a);
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'simde__m256 simde_mm256_load_ps(const float*)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'const float*' to 'const simde__m256*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:3011:8: note: in expansion of macro 'SIMDE_CAST_ALIGN'
3011 | r = *SIMDE_CAST_ALIGN(32, simde__m256 const*, a);
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'void simde_mm256_store_ps(simde_float32*, simde__m256)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'simde_float32*' {aka 'float*'} to 'simde__m256*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:4214:4: note: in expansion of macro 'SIMDE_CAST_ALIGN'
4214 | *SIMDE_CAST_ALIGN(32, simde__m256*, mem_addr) = a;
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'void simde_mm256_store_pd(simde_float64*, simde__m256d)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'simde_float64*' {aka 'double*'} to 'simde__m256d*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:4229:4: note: in expansion of macro 'SIMDE_CAST_ALIGN'
4229 | *SIMDE_CAST_ALIGN(32, simde__m256d*, mem_addr) = a;
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'void simde_mm256_stream_ps(simde_float32*, simde__m256)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'simde_float32*' {aka 'float*'} to 'simde__m256*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:4328:4: note: in expansion of macro 'SIMDE_CAST_ALIGN'
4328 | *SIMDE_CAST_ALIGN(32, simde__m256*, mem_addr) = a;
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'void simde_mm256_stream_pd(simde_float64*, simde__m256d)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'simde_float64*' {aka 'double*'} to 'simde__m256d*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:4343:4: note: in expansion of macro 'SIMDE_CAST_ALIGN'
4343 | *SIMDE_CAST_ALIGN(32, simde__m256d*, mem_addr) = a;
| ^~~~~~~~~~~~~~~~
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o GappedXdropAlignerDna.o GappedXdropAlignerDna.cc
In file included from ../debian/include/simde/x86/../simde-common.h:27,
from ../debian/include/simde/x86/mmx.h:28,
from ../debian/include/simde/x86/sse.h:32,
from ../debian/include/simde/x86/sse2.h:34,
from ../debian/include/simde/x86/sse3.h:28,
from ../debian/include/simde/x86/ssse3.h:28,
from ../debian/include/simde/x86/sse4.1.h:28,
from ../debian/include/simde/x86/avx2.h:26,
from mcf_simd.hh:7,
from GappedXdropAligner.hh:50,
from GappedXdropAlignerDna.cc:4:
../debian/include/simde/x86/avx.h: In function 'simde__m256d simde_mm256_load_pd(const double*)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'const double*' to 'const simde__m256d*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:2992:8: note: in expansion of macro 'SIMDE_CAST_ALIGN'
2992 | r = *SIMDE_CAST_ALIGN(32, simde__m256d const*, a);
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'simde__m256 simde_mm256_load_ps(const float*)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'const float*' to 'const simde__m256*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:3011:8: note: in expansion of macro 'SIMDE_CAST_ALIGN'
3011 | r = *SIMDE_CAST_ALIGN(32, simde__m256 const*, a);
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'void simde_mm256_store_ps(simde_float32*, simde__m256)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'simde_float32*' {aka 'float*'} to 'simde__m256*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:4214:4: note: in expansion of macro 'SIMDE_CAST_ALIGN'
4214 | *SIMDE_CAST_ALIGN(32, simde__m256*, mem_addr) = a;
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'void simde_mm256_store_pd(simde_float64*, simde__m256d)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'simde_float64*' {aka 'double*'} to 'simde__m256d*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:4229:4: note: in expansion of macro 'SIMDE_CAST_ALIGN'
4229 | *SIMDE_CAST_ALIGN(32, simde__m256d*, mem_addr) = a;
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'void simde_mm256_stream_ps(simde_float32*, simde__m256)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'simde_float32*' {aka 'float*'} to 'simde__m256*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:4328:4: note: in expansion of macro 'SIMDE_CAST_ALIGN'
4328 | *SIMDE_CAST_ALIGN(32, simde__m256*, mem_addr) = a;
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'void simde_mm256_stream_pd(simde_float64*, simde__m256d)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'simde_float64*' {aka 'double*'} to 'simde__m256d*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:4343:4: note: in expansion of macro 'SIMDE_CAST_ALIGN'
4343 | *SIMDE_CAST_ALIGN(32, simde__m256d*, mem_addr) = a;
| ^~~~~~~~~~~~~~~~
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o GappedXdropAlignerPssm.o GappedXdropAlignerPssm.cc
In file included from ../debian/include/simde/x86/../simde-common.h:27,
from ../debian/include/simde/x86/mmx.h:28,
from ../debian/include/simde/x86/sse.h:32,
from ../debian/include/simde/x86/sse2.h:34,
from ../debian/include/simde/x86/sse3.h:28,
from ../debian/include/simde/x86/ssse3.h:28,
from ../debian/include/simde/x86/sse4.1.h:28,
from ../debian/include/simde/x86/avx2.h:26,
from mcf_simd.hh:7,
from GappedXdropAligner.hh:50,
from GappedXdropAlignerPssm.cc:3:
../debian/include/simde/x86/avx.h: In function 'simde__m256d simde_mm256_load_pd(const double*)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'const double*' to 'const simde__m256d*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:2992:8: note: in expansion of macro 'SIMDE_CAST_ALIGN'
2992 | r = *SIMDE_CAST_ALIGN(32, simde__m256d const*, a);
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'simde__m256 simde_mm256_load_ps(const float*)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'const float*' to 'const simde__m256*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:3011:8: note: in expansion of macro 'SIMDE_CAST_ALIGN'
3011 | r = *SIMDE_CAST_ALIGN(32, simde__m256 const*, a);
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'void simde_mm256_store_ps(simde_float32*, simde__m256)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'simde_float32*' {aka 'float*'} to 'simde__m256*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:4214:4: note: in expansion of macro 'SIMDE_CAST_ALIGN'
4214 | *SIMDE_CAST_ALIGN(32, simde__m256*, mem_addr) = a;
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'void simde_mm256_store_pd(simde_float64*, simde__m256d)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'simde_float64*' {aka 'double*'} to 'simde__m256d*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:4229:4: note: in expansion of macro 'SIMDE_CAST_ALIGN'
4229 | *SIMDE_CAST_ALIGN(32, simde__m256d*, mem_addr) = a;
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'void simde_mm256_stream_ps(simde_float32*, simde__m256)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'simde_float32*' {aka 'float*'} to 'simde__m256*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:4328:4: note: in expansion of macro 'SIMDE_CAST_ALIGN'
4328 | *SIMDE_CAST_ALIGN(32, simde__m256*, mem_addr) = a;
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'void simde_mm256_stream_pd(simde_float64*, simde__m256d)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'simde_float64*' {aka 'double*'} to 'simde__m256d*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:4343:4: note: in expansion of macro 'SIMDE_CAST_ALIGN'
4343 | *SIMDE_CAST_ALIGN(32, simde__m256d*, mem_addr) = a;
| ^~~~~~~~~~~~~~~~
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o GappedXdropAligner2qual.o GappedXdropAligner2qual.cc
In file included from ../debian/include/simde/x86/../simde-common.h:27,
from ../debian/include/simde/x86/mmx.h:28,
from ../debian/include/simde/x86/sse.h:32,
from ../debian/include/simde/x86/sse2.h:34,
from ../debian/include/simde/x86/sse3.h:28,
from ../debian/include/simde/x86/ssse3.h:28,
from ../debian/include/simde/x86/sse4.1.h:28,
from ../debian/include/simde/x86/avx2.h:26,
from mcf_simd.hh:7,
from GappedXdropAligner.hh:50,
from GappedXdropAligner2qual.cc:3:
../debian/include/simde/x86/avx.h: In function 'simde__m256d simde_mm256_load_pd(const double*)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'const double*' to 'const simde__m256d*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:2992:8: note: in expansion of macro 'SIMDE_CAST_ALIGN'
2992 | r = *SIMDE_CAST_ALIGN(32, simde__m256d const*, a);
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'simde__m256 simde_mm256_load_ps(const float*)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'const float*' to 'const simde__m256*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:3011:8: note: in expansion of macro 'SIMDE_CAST_ALIGN'
3011 | r = *SIMDE_CAST_ALIGN(32, simde__m256 const*, a);
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'void simde_mm256_store_ps(simde_float32*, simde__m256)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'simde_float32*' {aka 'float*'} to 'simde__m256*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:4214:4: note: in expansion of macro 'SIMDE_CAST_ALIGN'
4214 | *SIMDE_CAST_ALIGN(32, simde__m256*, mem_addr) = a;
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'void simde_mm256_store_pd(simde_float64*, simde__m256d)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'simde_float64*' {aka 'double*'} to 'simde__m256d*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:4229:4: note: in expansion of macro 'SIMDE_CAST_ALIGN'
4229 | *SIMDE_CAST_ALIGN(32, simde__m256d*, mem_addr) = a;
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'void simde_mm256_stream_ps(simde_float32*, simde__m256)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'simde_float32*' {aka 'float*'} to 'simde__m256*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:4328:4: note: in expansion of macro 'SIMDE_CAST_ALIGN'
4328 | *SIMDE_CAST_ALIGN(32, simde__m256*, mem_addr) = a;
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'void simde_mm256_stream_pd(simde_float64*, simde__m256d)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'simde_float64*' {aka 'double*'} to 'simde__m256d*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:4343:4: note: in expansion of macro 'SIMDE_CAST_ALIGN'
4343 | *SIMDE_CAST_ALIGN(32, simde__m256d*, mem_addr) = a;
| ^~~~~~~~~~~~~~~~
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o GappedXdropAligner3frame.o GappedXdropAligner3frame.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o mcf_gap_costs.o mcf_gap_costs.cc
In file included from ../debian/include/simde/x86/../simde-common.h:27,
from ../debian/include/simde/x86/mmx.h:28,
from ../debian/include/simde/x86/sse.h:32,
from ../debian/include/simde/x86/sse2.h:34,
from ../debian/include/simde/x86/sse3.h:28,
from ../debian/include/simde/x86/ssse3.h:28,
from ../debian/include/simde/x86/sse4.1.h:28,
from ../debian/include/simde/x86/avx2.h:26,
from mcf_simd.hh:7,
from GappedXdropAligner.hh:50,
from GappedXdropAligner3frame.cc:53:
../debian/include/simde/x86/avx.h: In function 'simde__m256d simde_mm256_load_pd(const double*)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'const double*' to 'const simde__m256d*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:2992:8: note: in expansion of macro 'SIMDE_CAST_ALIGN'
2992 | r = *SIMDE_CAST_ALIGN(32, simde__m256d const*, a);
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'simde__m256 simde_mm256_load_ps(const float*)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'const float*' to 'const simde__m256*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:3011:8: note: in expansion of macro 'SIMDE_CAST_ALIGN'
3011 | r = *SIMDE_CAST_ALIGN(32, simde__m256 const*, a);
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'void simde_mm256_store_ps(simde_float32*, simde__m256)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'simde_float32*' {aka 'float*'} to 'simde__m256*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:4214:4: note: in expansion of macro 'SIMDE_CAST_ALIGN'
4214 | *SIMDE_CAST_ALIGN(32, simde__m256*, mem_addr) = a;
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'void simde_mm256_store_pd(simde_float64*, simde__m256d)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'simde_float64*' {aka 'double*'} to 'simde__m256d*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:4229:4: note: in expansion of macro 'SIMDE_CAST_ALIGN'
4229 | *SIMDE_CAST_ALIGN(32, simde__m256d*, mem_addr) = a;
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'void simde_mm256_stream_ps(simde_float32*, simde__m256)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'simde_float32*' {aka 'float*'} to 'simde__m256*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:4328:4: note: in expansion of macro 'SIMDE_CAST_ALIGN'
4328 | *SIMDE_CAST_ALIGN(32, simde__m256*, mem_addr) = a;
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'void simde_mm256_stream_pd(simde_float64*, simde__m256d)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'simde_float64*' {aka 'double*'} to 'simde__m256d*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:4343:4: note: in expansion of macro 'SIMDE_CAST_ALIGN'
4343 | *SIMDE_CAST_ALIGN(32, simde__m256d*, mem_addr) = a;
| ^~~~~~~~~~~~~~~~
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o GeneticCode.o GeneticCode.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o GreedyXdropAligner.o GreedyXdropAligner.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o LastEvaluer.o LastEvaluer.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o OneQualityScoreMatrix.o OneQualityScoreMatrix.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o QualityPssmMaker.o QualityPssmMaker.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o TwoQualityScoreMatrix.o TwoQualityScoreMatrix.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o gaplessXdrop.o gaplessXdrop.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o gaplessPssmXdrop.o gaplessPssmXdrop.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o gaplessTwoQualityXdrop.o gaplessTwoQualityXdrop.cc
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -c -o alp/sls_alignment_evaluer.o alp/sls_alignment_evaluer.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -c -o alp/sls_pvalues.o alp/sls_pvalues.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -c -o alp/sls_alp_sim.o alp/sls_alp_sim.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -c -o alp/sls_alp_regression.o alp/sls_alp_regression.cpp
In file included from /usr/include/c++/9/algorithm:62,
from alp/sls_alp_regression.hpp:46,
from alp/sls_alp_regression.cpp:36:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<double, long int>*, std::vector<std::pair<double, long int> > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, long int>*, std::vector<std::pair<double, long int> > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, long int>*, std::vector<std::pair<double, long int> > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator<std::pair<double, long int>*, std::vector<std::pair<double, long int> > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, long int>*, std::vector<std::pair<double, long int> > >' changed in GCC 7.1
78 | __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b,
| ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, long int>*, std::vector<std::pair<double, long int> > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, long int>*, std::vector<std::pair<double, long int> > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, long int>*, std::vector<std::pair<double, long int> > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, long int>*, std::vector<std::pair<double, long int> > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, long int>*, std::vector<std::pair<double, long int> > >' changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from alp/sls_alp_regression.hpp:46,
from alp/sls_alp_regression.cpp:36:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from alp/sls_alp_regression.hpp:46,
from alp/sls_alp_regression.cpp:36:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In static member function 'static void Sls::alp_reg::find_tetta_general(double (*)(double, void*), void*, double, double, long int, double, std::vector<double>&)':
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In static member function 'static double Sls::alp_reg::median(long int, double*)':
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from alp/sls_alp_regression.hpp:46,
from alp/sls_alp_regression.cpp:36:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<double, long int>*, std::vector<std::pair<double, long int> > >; _Distance = int; _Tp = std::pair<double, long int>; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, long int>*, std::vector<std::pair<double, long int> > >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from alp/sls_alp_regression.hpp:46,
from alp/sls_alp_regression.cpp:36:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<double, long int>*, std::vector<std::pair<double, long int> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, long int>*, std::vector<std::pair<double, long int> > >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, long int>*, std::vector<std::pair<double, long int> > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1920:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, long int>*, std::vector<std::pair<double, long int> > >' changed in GCC 7.1
1920 | std::__move_median_to_first(__first, __first + 1, __mid, __last - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1921 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1920:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, long int>*, std::vector<std::pair<double, long int> > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, long int>*, std::vector<std::pair<double, long int> > >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In static member function 'static double Sls::alp_reg::robust_sum(double*, long int, long int, bool*&)':
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, long int>*, std::vector<std::pair<double, long int> > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, long int>*, std::vector<std::pair<double, long int> > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, long int>*, std::vector<std::pair<double, long int> > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from alp/sls_pvalues.hpp:41,
from alp/sls_alignment_evaluer.hpp:39,
from alp/sls_alignment_evaluer.cpp:37:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -c -o alp/sls_alp_data.o alp/sls_alp_data.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -c -o alp/sls_alp.o alp/sls_alp.cpp
/usr/include/c++/9/bits/vector.tcc: In member function 'void Sls::AlignmentEvaluer::initParameters(const Sls::AlignmentEvaluerParametersWithErrors&)':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -c -o alp/sls_basic.o alp/sls_basic.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -c -o alp/njn_localmaxstatmatrix.o alp/njn_localmaxstatmatrix.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -c -o alp/njn_localmaxstat.o alp/njn_localmaxstat.cpp
In file included from /usr/include/c++/9/algorithm:62,
from alp/sls_alp_regression.hpp:46,
from alp/sls_alp_data.hpp:62,
from alp/sls_alp_data.cpp:36:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from alp/sls_alp_regression.hpp:46,
from alp/sls_alp_data.hpp:62,
from alp/sls_alp_data.cpp:36:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from alp/sls_alp_regression.hpp:46,
from alp/sls_alp_data.hpp:62,
from alp/sls_alp_data.cpp:36:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -c -o alp/njn_localmaxstatutil.o alp/njn_localmaxstatutil.cpp
/usr/include/c++/9/bits/stl_algo.h: In constructor 'Sls::importance_sampling::importance_sampling(Sls::alp_data*, long int, long int, double, long int, long int**, double*, double*)':
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -c -o alp/njn_dynprogprob.o alp/njn_dynprogprob.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -c -o alp/njn_dynprogprobproto.o alp/njn_dynprogprobproto.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -c -o alp/njn_dynprogproblim.o alp/njn_dynprogproblim.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -c -o alp/njn_ioutil.o alp/njn_ioutil.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -c -o alp/njn_random.o alp/njn_random.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -c -o alp/sls_falp_alignment_evaluer.o alp/sls_falp_alignment_evaluer.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -c -o alp/sls_fsa1_pvalues.o alp/sls_fsa1_pvalues.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -c -o alp/sls_fsa1_utils.o alp/sls_fsa1_utils.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -c -o alp/sls_fsa1.o alp/sls_fsa1.cpp
In file included from /usr/include/c++/9/vector:72,
from alp/sls_fsa1_pvalues.hpp:41,
from alp/sls_falp_alignment_evaluer.hpp:40,
from alp/sls_falp_alignment_evaluer.cpp:37:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void Sls::FrameshiftAlignmentEvaluer::initParameters(const Sls::AlignmentEvaluerParametersWithErrors&)':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -c -o alp/sls_fsa1_parameters.o alp/sls_fsa1_parameters.cpp
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o Alignment.o Alignment.cc
In file included from ../debian/include/simde/x86/../simde-common.h:27,
from ../debian/include/simde/x86/mmx.h:28,
from ../debian/include/simde/x86/sse.h:32,
from ../debian/include/simde/x86/sse2.h:34,
from ../debian/include/simde/x86/sse3.h:28,
from ../debian/include/simde/x86/ssse3.h:28,
from ../debian/include/simde/x86/sse4.1.h:28,
from ../debian/include/simde/x86/avx2.h:26,
from mcf_simd.hh:7,
from GappedXdropAligner.hh:50,
from Centroid.hh:6,
from Alignment.cc:5:
../debian/include/simde/x86/avx.h: In function 'simde__m256d simde_mm256_load_pd(const double*)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'const double*' to 'const simde__m256d*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:2992:8: note: in expansion of macro 'SIMDE_CAST_ALIGN'
2992 | r = *SIMDE_CAST_ALIGN(32, simde__m256d const*, a);
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'simde__m256 simde_mm256_load_ps(const float*)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'const float*' to 'const simde__m256*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:3011:8: note: in expansion of macro 'SIMDE_CAST_ALIGN'
3011 | r = *SIMDE_CAST_ALIGN(32, simde__m256 const*, a);
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'void simde_mm256_store_ps(simde_float32*, simde__m256)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'simde_float32*' {aka 'float*'} to 'simde__m256*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:4214:4: note: in expansion of macro 'SIMDE_CAST_ALIGN'
4214 | *SIMDE_CAST_ALIGN(32, simde__m256*, mem_addr) = a;
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'void simde_mm256_store_pd(simde_float64*, simde__m256d)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'simde_float64*' {aka 'double*'} to 'simde__m256d*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:4229:4: note: in expansion of macro 'SIMDE_CAST_ALIGN'
4229 | *SIMDE_CAST_ALIGN(32, simde__m256d*, mem_addr) = a;
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'void simde_mm256_stream_ps(simde_float32*, simde__m256)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'simde_float32*' {aka 'float*'} to 'simde__m256*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:4328:4: note: in expansion of macro 'SIMDE_CAST_ALIGN'
4328 | *SIMDE_CAST_ALIGN(32, simde__m256*, mem_addr) = a;
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'void simde_mm256_stream_pd(simde_float64*, simde__m256d)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'simde_float64*' {aka 'double*'} to 'simde__m256d*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:4343:4: note: in expansion of macro 'SIMDE_CAST_ALIGN'
4343 | *SIMDE_CAST_ALIGN(32, simde__m256d*, mem_addr) = a;
| ^~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from alp/sls_fsa1_utils.hpp:40,
from alp/sls_fsa1_utils.cpp:36:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
509 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
In file included from /usr/include/c++/9/vector:67,
from alp/sls_fsa1_utils.hpp:40,
from alp/sls_fsa1_utils.cpp:36:
/usr/include/c++/9/bits/stl_vector.h: In static member function 'static void Sls::FSA_utils::multiply_matrix_and_vector(const std::vector<std::vector<double> >&, const std::vector<double>&, std::vector<double>&)':
/usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
957 | _M_fill_insert(end(), __new_size - size(), __x);
| ^~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In static member function 'static void Sls::FSA_utils::multiply_matrices(const std::vector<std::vector<double> >&, const std::vector<std::vector<double> >&, std::vector<std::vector<double> >&)':
/usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
957 | _M_fill_insert(end(), __new_size - size(), __x);
| ^~~~~~~~~~~~~~
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o AlignmentPot.o AlignmentPot.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o AlignmentWrite.o AlignmentWrite.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o Centroid.o Centroid.cc
In file included from ../debian/include/simde/x86/../simde-common.h:27,
from ../debian/include/simde/x86/mmx.h:28,
from ../debian/include/simde/x86/sse.h:32,
from ../debian/include/simde/x86/sse2.h:34,
from ../debian/include/simde/x86/sse3.h:28,
from ../debian/include/simde/x86/ssse3.h:28,
from ../debian/include/simde/x86/sse4.1.h:28,
from ../debian/include/simde/x86/avx2.h:26,
from mcf_simd.hh:7,
from GappedXdropAligner.hh:50,
from Centroid.hh:6,
from Centroid.cc:4:
../debian/include/simde/x86/avx.h: In function 'simde__m256d simde_mm256_load_pd(const double*)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'const double*' to 'const simde__m256d*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:2992:8: note: in expansion of macro 'SIMDE_CAST_ALIGN'
2992 | r = *SIMDE_CAST_ALIGN(32, simde__m256d const*, a);
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'simde__m256 simde_mm256_load_ps(const float*)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'const float*' to 'const simde__m256*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:3011:8: note: in expansion of macro 'SIMDE_CAST_ALIGN'
3011 | r = *SIMDE_CAST_ALIGN(32, simde__m256 const*, a);
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'void simde_mm256_store_ps(simde_float32*, simde__m256)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'simde_float32*' {aka 'float*'} to 'simde__m256*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:4214:4: note: in expansion of macro 'SIMDE_CAST_ALIGN'
4214 | *SIMDE_CAST_ALIGN(32, simde__m256*, mem_addr) = a;
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'void simde_mm256_store_pd(simde_float64*, simde__m256d)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'simde_float64*' {aka 'double*'} to 'simde__m256d*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:4229:4: note: in expansion of macro 'SIMDE_CAST_ALIGN'
4229 | *SIMDE_CAST_ALIGN(32, simde__m256d*, mem_addr) = a;
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'void simde_mm256_stream_ps(simde_float32*, simde__m256)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'simde_float32*' {aka 'float*'} to 'simde__m256*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:4328:4: note: in expansion of macro 'SIMDE_CAST_ALIGN'
4328 | *SIMDE_CAST_ALIGN(32, simde__m256*, mem_addr) = a;
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'void simde_mm256_stream_pd(simde_float64*, simde__m256d)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'simde_float64*' {aka 'double*'} to 'simde__m256d*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:4343:4: note: in expansion of macro 'SIMDE_CAST_ALIGN'
4343 | *SIMDE_CAST_ALIGN(32, simde__m256d*, mem_addr) = a;
| ^~~~~~~~~~~~~~~~
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o DiagonalTable.o DiagonalTable.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o SegmentPair.o SegmentPair.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o SegmentPairPot.o SegmentPairPot.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o SubsetSuffixArraySearch.o SubsetSuffixArraySearch.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o lastal.o lastal.cc
In file included from /usr/include/c++/9/vector:72,
from alp/sls_alp_regression.hpp:43,
from alp/sls_fsa1.hpp:39,
from alp/sls_fsa1.cpp:36:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from alp/sls_alp_regression.hpp:43,
from alp/sls_fsa1.hpp:39,
from alp/sls_fsa1.cpp:36:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void Sls::IS1_general_simulation::calculate_weight_W1_for_fixed_lengths_using_recursions(long int, long int, double&, bool, std::vector<std::vector<double> >*, std::vector<std::vector<double> >*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o split/cbrc_unsplit_alignment.o split/cbrc_unsplit_alignment.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o split/last-split-main.o split/last-split-main.cc
In file included from ../debian/include/simde/x86/../simde-common.h:27,
from ../debian/include/simde/x86/mmx.h:28,
from ../debian/include/simde/x86/sse.h:32,
from ../debian/include/simde/x86/sse2.h:34,
from ../debian/include/simde/x86/sse3.h:28,
from ../debian/include/simde/x86/ssse3.h:28,
from ../debian/include/simde/x86/sse4.1.h:28,
from ../debian/include/simde/x86/avx2.h:26,
from mcf_simd.hh:7,
from GappedXdropAligner.hh:50,
from Centroid.hh:6,
from lastal.cc:15:
../debian/include/simde/x86/avx.h: In function 'simde__m256d simde_mm256_load_pd(const double*)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'const double*' to 'const simde__m256d*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:2992:8: note: in expansion of macro 'SIMDE_CAST_ALIGN'
2992 | r = *SIMDE_CAST_ALIGN(32, simde__m256d const*, a);
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'simde__m256 simde_mm256_load_ps(const float*)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'const float*' to 'const simde__m256*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:3011:8: note: in expansion of macro 'SIMDE_CAST_ALIGN'
3011 | r = *SIMDE_CAST_ALIGN(32, simde__m256 const*, a);
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'void simde_mm256_store_ps(simde_float32*, simde__m256)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'simde_float32*' {aka 'float*'} to 'simde__m256*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:4214:4: note: in expansion of macro 'SIMDE_CAST_ALIGN'
4214 | *SIMDE_CAST_ALIGN(32, simde__m256*, mem_addr) = a;
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'void simde_mm256_store_pd(simde_float64*, simde__m256d)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'simde_float64*' {aka 'double*'} to 'simde__m256d*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:4229:4: note: in expansion of macro 'SIMDE_CAST_ALIGN'
4229 | *SIMDE_CAST_ALIGN(32, simde__m256d*, mem_addr) = a;
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'void simde_mm256_stream_ps(simde_float32*, simde__m256)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'simde_float32*' {aka 'float*'} to 'simde__m256*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:4328:4: note: in expansion of macro 'SIMDE_CAST_ALIGN'
4328 | *SIMDE_CAST_ALIGN(32, simde__m256*, mem_addr) = a;
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'void simde_mm256_stream_pd(simde_float64*, simde__m256d)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'simde_float64*' {aka 'double*'} to 'simde__m256d*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:4343:4: note: in expansion of macro 'SIMDE_CAST_ALIGN'
4343 | *SIMDE_CAST_ALIGN(32, simde__m256d*, mem_addr) = a;
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In static member function 'static void Sls::test::collect_and_output_E_distr_upto_fixed_ALP(long int, std::string, Sls::two_dim_layer_alignment_algorithm<long int>&, Sls::IS1_general_simulation&, long int, double, long int, long int, Sls::FALP_set_of_parameters&, bool, bool, Sls::IS1_general*, double*, long int*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o split/cbrc_split_aligner.o split/cbrc_split_aligner.cc
split/cbrc_split_aligner.cc: In member function 'void cbrc::SplitAligner::initSpliceSignals(unsigned int)':
split/cbrc_split_aligner.cc:853:14: warning: comparison of integer expressions of different signedness: 'const unsigned int' and 'int' [-Wsign-compare]
853 | if (a.rend > chromEnd - chromBeg)
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o split/last-split.o split/last-split.cc
/usr/include/c++/9/bits/stl_vector.h: In static member function 'static void Sls::test::collect_and_output_E_distr_upto_fixed_ALP_with_saving_of_states(bool, double&, long int, std::string, Sls::two_dim_layer_alignment_algorithm<long int>&, Sls::IS1_general_simulation&, long int, double, long int, long int, Sls::FALP_set_of_parameters&, bool&, bool, bool, double, bool&, long int&, double, bool, Sls::mult_states_type*, Sls::mult_states_type*&, long int&, bool, long int, Sls::IS1_general*, double*, long int*, bool)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In function 'static void Sls::test::collect_and_output_E_distr_upto_fixed_ALP_with_saving_of_states(bool, double&, long int, std::string, Sls::two_dim_layer_alignment_algorithm<long int>&, Sls::IS1_general_simulation&, long int, double, long int, long int, Sls::FALP_set_of_parameters&, bool&, bool, bool, double, bool&, long int&, double, bool, Sls::mult_states_type*, Sls::mult_states_type*&, long int&, bool, long int, Sls::IS1_general*, double*, long int*, bool)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from split/cbrc_unsplit_alignment.hh:12,
from split/cbrc_split_aligner.hh:7,
from split/cbrc_split_aligner.cc:4:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from split/cbrc_unsplit_alignment.hh:12,
from split/cbrc_split_aligner.hh:7,
from split/cbrc_split_aligner.cc:4:
/usr/include/c++/9/bits/stl_vector.h: In member function 'std::vector<double> cbrc::SplitAligner::marginalProbs(unsigned int, unsigned int, unsigned int, unsigned int) const':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from alp/sls_alp_regression.hpp:46,
from alp/sls_fsa1.hpp:39,
from alp/sls_fsa1.cpp:36:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from alp/sls_alp_regression.hpp:46,
from alp/sls_fsa1.hpp:39,
from alp/sls_fsa1.cpp:36:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from alp/sls_alp_regression.hpp:46,
from alp/sls_fsa1.hpp:39,
from alp/sls_fsa1.cpp:36:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In static member function 'static void Sls::test::calculate_ungapped_lambda(long int, double*, double*, long int**, double&)':
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
cc -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o last-merge-batches.o last-merge-batches.c
/usr/include/c++/9/bits/stl_algo.h: In static member function 'static void Sls::test::calculate_ungapped_lambda_general(double (*)(double, void*), void*, double&)':
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o last-pair-probs.o last-pair-probs.cc
In file included from /usr/include/c++/9/vector:67,
from alp/sls_alp_regression.hpp:43,
from alp/sls_fsa1.hpp:39,
from alp/sls_fsa1.cpp:36:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void Sls::test::FSA_IS(bool, long int, long int, const long int*, const long int* const*, const double*, const double*, long int, long int, long int, long int, long int, long int, std::string, std::string, std::string, std::string, double, double, bool, double, double, long int, long int, long int, bool, bool, double, Sls::FALP_set_of_parameters&, Sls::par_test1_type*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o last-pair-probs-main.o last-pair-probs-main.cc
g++ -DLAST_INT_TYPE=size_t -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o MultiSequence.o8 MultiSequence.cc
In file included from /usr/include/c++/9/vector:72,
from last-pair-probs.hh:28,
from last-pair-probs.cc:4:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {Alignment}; _Tp = Alignment; _Alloc = std::allocator<Alignment>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<Alignment>::iterator' {aka '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from last-pair-probs.cc:9:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >; _Compare = __gnu_cxx::__ops::_Val_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
1820 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__move_merge_adaptive_backward(_BidirectionalIterator1, _BidirectionalIterator1, _BidirectionalIterator2, _BidirectionalIterator2, _BidirectionalIterator3, _Compare) [with _BidirectionalIterator1 = __gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >; _BidirectionalIterator2 = Alignment*; _BidirectionalIterator3 = __gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:2329:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2329 | __move_merge_adaptive_backward(_BidirectionalIterator1 __first1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2329:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:2329:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:2329:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h: In function '_RandomAccessIterator std::_V2::__rotate(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, std::random_access_iterator_tag) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >]':
/usr/include/c++/9/bits/stl_algo.h:1328:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
1328 | __rotate(_RandomAccessIterator __first,
| ^~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1328:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1328:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__merge_without_buffer(_BidirectionalIterator, _BidirectionalIterator, _BidirectionalIterator, _Distance, _Distance, _Compare) [with _BidirectionalIterator = __gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >; _Distance = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:2471:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2471 | __merge_without_buffer(_BidirectionalIterator __first,
| ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2471:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:2471:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1443:27: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
1443 | return std::__rotate(__first, __middle, __last,
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
1444 | std::__iterator_category(__first));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2512:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2512 | std::__merge_without_buffer(__first, __first_cut, __new_middle,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2513 | __len11, __len22, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2514:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2514 | std::__merge_without_buffer(__new_middle, __second_cut, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2515 | __len1 - __len11, __len2 - __len22, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__inplace_stable_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:2755:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2755 | __inplace_stable_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2755:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2760 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2764:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2764 | std::__inplace_stable_sort(__first, __middle, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2765:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2765 | std::__inplace_stable_sort(__middle, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2766 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2767 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2768 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2769 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__merge_adaptive(_BidirectionalIterator, _BidirectionalIterator, _BidirectionalIterator, _Distance, _Distance, _Pointer, _Distance, _Compare) [with _BidirectionalIterator = __gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >; _Distance = int; _Pointer = Alignment*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:2410:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2410 | __merge_adaptive(_BidirectionalIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2410:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:2410:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:2426:39: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2426 | std::__move_merge_adaptive_backward(__first, __middle, __buffer,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2427 | __buffer_end, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2426:39: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1443:27: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
1443 | return std::__rotate(__first, __middle, __last,
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
1444 | std::__iterator_category(__first));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2458:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2458 | std::__merge_adaptive(__first, __first_cut, __new_middle, __len11,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2459 | __len22, __buffer, __buffer_size, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2460:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2460 | std::__merge_adaptive(__new_middle, __second_cut, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2461 | __len1 - __len11,
| ~~~~~~~~~~~~~~~~~
2462 | __len2 - __len22, __buffer,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~
2463 | __buffer_size, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function '_OutputIterator std::__move_merge(_InputIterator, _InputIterator, _InputIterator, _InputIterator, _OutputIterator, _Compare) [with _InputIterator = __gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >; _OutputIterator = Alignment*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:2633:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2633 | __move_merge(_InputIterator __first1, _InputIterator __last1,
| ^~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2633:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:2633:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:2633:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:2633:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:2633:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
g++ -DLAST_INT_TYPE=size_t -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o MultiSequenceQual.o8 MultiSequenceQual.cc
/usr/include/c++/9/bits/stl_algo.h: In function '_OutputIterator std::__move_merge(_InputIterator, _InputIterator, _InputIterator, _InputIterator, _OutputIterator, _Compare) [with _InputIterator = Alignment*; _OutputIterator = __gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:2633:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__merge_sort_with_buffer(_RandomAccessIterator, _RandomAccessIterator, _Pointer, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >; _Pointer = Alignment*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:2699:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2699 | __merge_sort_with_buffer(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2699:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:2689:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2689 | std::__insertion_sort(__first, __first + __chunk_size, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2692:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2692 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2668:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2668 | __result = std::__move_merge(__first, __first + __step_size,
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2669 | __first + __step_size,
| ~~~~~~~~~~~~~~~~~~~~~~
2670 | __first + __two_step,
| ~~~~~~~~~~~~~~~~~~~~~
2671 | __result, __comp);
| ~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2668:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:2676:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2676 | std::__move_merge(__first, __first + __step_size,
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2677 | __first + __step_size, __last, __result, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2676:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:2668:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2668 | __result = std::__move_merge(__first, __first + __step_size,
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2669 | __first + __step_size,
| ~~~~~~~~~~~~~~~~~~~~~~
2670 | __first + __two_step,
| ~~~~~~~~~~~~~~~~~~~~~
2671 | __result, __comp);
| ~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2676:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2676 | std::__move_merge(__first, __first + __step_size,
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2677 | __first + __step_size, __last, __result, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2676:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:2692:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2692 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__stable_sort_adaptive(_RandomAccessIterator, _RandomAccessIterator, _Pointer, _Distance, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >; _Pointer = Alignment*; _Distance = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:2726:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2726 | __stable_sort_adaptive(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2726:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:2726:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:2735:31: note: parameter passing for argument of type 'const __gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2735 | std::__stable_sort_adaptive(__first, __middle, __buffer,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2736 | __buffer_size, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2737:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2737 | std::__stable_sort_adaptive(__middle, __last, __buffer,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
2738 | __buffer_size, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2742:33: note: parameter passing for argument of type 'const __gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2742 | std::__merge_sort_with_buffer(__first, __middle, __buffer, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2743:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2743 | std::__merge_sort_with_buffer(__middle, __last, __buffer, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2745:28: note: parameter passing for argument of type 'const __gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2745 | std::__merge_adaptive(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2746 | _Distance(__middle - __first),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2747 | _Distance(__last - __middle),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2748 | __buffer, __buffer_size,
| ~~~~~~~~~~~~~~~~~~~~~~~~
2749 | __comp);
| ~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from last-pair-probs.hh:28,
from last-pair-probs.cc:4:
/usr/include/c++/9/bits/vector.tcc: In function 'bool readBatch(std::istream&, char, double, const std::set<std::__cxx11::basic_string<char> >&, std::vector<char>&, std::vector<const char*>&, std::vector<Alignment>&)':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from last-pair-probs.cc:9:
/usr/include/c++/9/bits/stl_algo.h:5039:29: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
5039 | std::__stable_sort_adaptive(__first, __last, __buf.begin(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
5040 | _DistanceType(__buf.size()), __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2760 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2760 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2760 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2760 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2760 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2764:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2764 | std::__inplace_stable_sort(__first, __middle, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2765:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2765 | std::__inplace_stable_sort(__middle, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2766 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2767 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2768 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2769 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2760 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2764:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2764 | std::__inplace_stable_sort(__first, __middle, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2765:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2765 | std::__inplace_stable_sort(__middle, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2766 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2767 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2768 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2769 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2766 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2767 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2768 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2769 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2760 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2760 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2764:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2764 | std::__inplace_stable_sort(__first, __middle, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2765:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2765 | std::__inplace_stable_sort(__middle, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2766 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2767 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2768 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2769 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2760 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2764:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2764 | std::__inplace_stable_sort(__first, __middle, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2765:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2765 | std::__inplace_stable_sort(__middle, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2766 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2767 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2768 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2769 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2766 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2767 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2768 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2769 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2766 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2767 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2768 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2769 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2760 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2760 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2760 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2764:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2764 | std::__inplace_stable_sort(__first, __middle, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2765:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2765 | std::__inplace_stable_sort(__middle, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2766 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2767 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2768 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2769 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2760 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2764:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2764 | std::__inplace_stable_sort(__first, __middle, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2765:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2765 | std::__inplace_stable_sort(__middle, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2766 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2767 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2768 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2769 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2766 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2767 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2768 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2769 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2760 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2760 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2764:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2764 | std::__inplace_stable_sort(__first, __middle, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2765:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2765 | std::__inplace_stable_sort(__middle, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2766 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2767 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2768 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2769 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2760 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2764:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2764 | std::__inplace_stable_sort(__first, __middle, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2765:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2765 | std::__inplace_stable_sort(__middle, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2766 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2767 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2768 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2769 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2766 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2767 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2768 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2769 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2766 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2767 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2768 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2769 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2766 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2767 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2768 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2769 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2760 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2760 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2760 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2760 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2764:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2764 | std::__inplace_stable_sort(__first, __middle, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2765:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2765 | std::__inplace_stable_sort(__middle, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2766 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2767 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2768 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2769 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2760 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2764:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2764 | std::__inplace_stable_sort(__first, __middle, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2765:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2765 | std::__inplace_stable_sort(__middle, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2766 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2767 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2768 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2769 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2766 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2767 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2768 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2769 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2760 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2760 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2764:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2764 | std::__inplace_stable_sort(__first, __middle, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2765:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2765 | std::__inplace_stable_sort(__middle, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2766 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2767 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2768 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2769 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2760 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2764:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2764 | std::__inplace_stable_sort(__first, __middle, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2765:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2765 | std::__inplace_stable_sort(__middle, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2766 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2767 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2768 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2769 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2766 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2767 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2768 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2769 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2766 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2767 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2768 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2769 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2760 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2760 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2760 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2764:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2764 | std::__inplace_stable_sort(__first, __middle, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2765:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2765 | std::__inplace_stable_sort(__middle, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2766 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2767 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2768 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2769 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2760 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2764:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2764 | std::__inplace_stable_sort(__first, __middle, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2765:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2765 | std::__inplace_stable_sort(__middle, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2766 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2767 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2768 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2769 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2766 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2767 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2768 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2769 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2760 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2760 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2764:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2764 | std::__inplace_stable_sort(__first, __middle, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2765:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2765 | std::__inplace_stable_sort(__middle, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2766 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2767 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2768 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2769 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2760 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2764:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2764 | std::__inplace_stable_sort(__first, __middle, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2765:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2765 | std::__inplace_stable_sort(__middle, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2766 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2767 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2768 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2769 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2766 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2767 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2768 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2769 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2766 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2767 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2768 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2769 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2766 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2767 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2768 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2769 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2766 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2767 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2768 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2769 | __comp);
| ~~~~~~~
g++ -DLAST_INT_TYPE=size_t -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o SubsetSuffixArray.o8 SubsetSuffixArray.cc
g++ -DLAST_INT_TYPE=size_t -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o SubsetSuffixArraySort.o8 SubsetSuffixArraySort.cc
g++ -DLAST_INT_TYPE=size_t -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o lastdb.o8 lastdb.cc
g++ -DLAST_INT_TYPE=size_t -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o Alignment.o8 Alignment.cc
In file included from ../debian/include/simde/x86/../simde-common.h:27,
from ../debian/include/simde/x86/mmx.h:28,
from ../debian/include/simde/x86/sse.h:32,
from ../debian/include/simde/x86/sse2.h:34,
from ../debian/include/simde/x86/sse3.h:28,
from ../debian/include/simde/x86/ssse3.h:28,
from ../debian/include/simde/x86/sse4.1.h:28,
from ../debian/include/simde/x86/avx2.h:26,
from mcf_simd.hh:7,
from GappedXdropAligner.hh:50,
from Centroid.hh:6,
from Alignment.cc:5:
../debian/include/simde/x86/avx.h: In function 'simde__m256d simde_mm256_load_pd(const double*)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'const double*' to 'const simde__m256d*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:2992:8: note: in expansion of macro 'SIMDE_CAST_ALIGN'
2992 | r = *SIMDE_CAST_ALIGN(32, simde__m256d const*, a);
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'simde__m256 simde_mm256_load_ps(const float*)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'const float*' to 'const simde__m256*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:3011:8: note: in expansion of macro 'SIMDE_CAST_ALIGN'
3011 | r = *SIMDE_CAST_ALIGN(32, simde__m256 const*, a);
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'void simde_mm256_store_ps(simde_float32*, simde__m256)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'simde_float32*' {aka 'float*'} to 'simde__m256*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:4214:4: note: in expansion of macro 'SIMDE_CAST_ALIGN'
4214 | *SIMDE_CAST_ALIGN(32, simde__m256*, mem_addr) = a;
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'void simde_mm256_store_pd(simde_float64*, simde__m256d)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'simde_float64*' {aka 'double*'} to 'simde__m256d*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:4229:4: note: in expansion of macro 'SIMDE_CAST_ALIGN'
4229 | *SIMDE_CAST_ALIGN(32, simde__m256d*, mem_addr) = a;
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'void simde_mm256_stream_ps(simde_float32*, simde__m256)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'simde_float32*' {aka 'float*'} to 'simde__m256*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:4328:4: note: in expansion of macro 'SIMDE_CAST_ALIGN'
4328 | *SIMDE_CAST_ALIGN(32, simde__m256*, mem_addr) = a;
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'void simde_mm256_stream_pd(simde_float64*, simde__m256d)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'simde_float64*' {aka 'double*'} to 'simde__m256d*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:4343:4: note: in expansion of macro 'SIMDE_CAST_ALIGN'
4343 | *SIMDE_CAST_ALIGN(32, simde__m256d*, mem_addr) = a;
| ^~~~~~~~~~~~~~~~
g++ -DLAST_INT_TYPE=size_t -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o AlignmentPot.o8 AlignmentPot.cc
g++ -DLAST_INT_TYPE=size_t -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o AlignmentWrite.o8 AlignmentWrite.cc
g++ -DLAST_INT_TYPE=size_t -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o Centroid.o8 Centroid.cc
In file included from ../debian/include/simde/x86/../simde-common.h:27,
from ../debian/include/simde/x86/mmx.h:28,
from ../debian/include/simde/x86/sse.h:32,
from ../debian/include/simde/x86/sse2.h:34,
from ../debian/include/simde/x86/sse3.h:28,
from ../debian/include/simde/x86/ssse3.h:28,
from ../debian/include/simde/x86/sse4.1.h:28,
from ../debian/include/simde/x86/avx2.h:26,
from mcf_simd.hh:7,
from GappedXdropAligner.hh:50,
from Centroid.hh:6,
from Centroid.cc:4:
../debian/include/simde/x86/avx.h: In function 'simde__m256d simde_mm256_load_pd(const double*)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'const double*' to 'const simde__m256d*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:2992:8: note: in expansion of macro 'SIMDE_CAST_ALIGN'
2992 | r = *SIMDE_CAST_ALIGN(32, simde__m256d const*, a);
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'simde__m256 simde_mm256_load_ps(const float*)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'const float*' to 'const simde__m256*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:3011:8: note: in expansion of macro 'SIMDE_CAST_ALIGN'
3011 | r = *SIMDE_CAST_ALIGN(32, simde__m256 const*, a);
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'void simde_mm256_store_ps(simde_float32*, simde__m256)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'simde_float32*' {aka 'float*'} to 'simde__m256*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:4214:4: note: in expansion of macro 'SIMDE_CAST_ALIGN'
4214 | *SIMDE_CAST_ALIGN(32, simde__m256*, mem_addr) = a;
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'void simde_mm256_store_pd(simde_float64*, simde__m256d)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'simde_float64*' {aka 'double*'} to 'simde__m256d*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:4229:4: note: in expansion of macro 'SIMDE_CAST_ALIGN'
4229 | *SIMDE_CAST_ALIGN(32, simde__m256d*, mem_addr) = a;
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'void simde_mm256_stream_ps(simde_float32*, simde__m256)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'simde_float32*' {aka 'float*'} to 'simde__m256*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:4328:4: note: in expansion of macro 'SIMDE_CAST_ALIGN'
4328 | *SIMDE_CAST_ALIGN(32, simde__m256*, mem_addr) = a;
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'void simde_mm256_stream_pd(simde_float64*, simde__m256d)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'simde_float64*' {aka 'double*'} to 'simde__m256d*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:4343:4: note: in expansion of macro 'SIMDE_CAST_ALIGN'
4343 | *SIMDE_CAST_ALIGN(32, simde__m256d*, mem_addr) = a;
| ^~~~~~~~~~~~~~~~
g++ -DLAST_INT_TYPE=size_t -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o DiagonalTable.o8 DiagonalTable.cc
g++ -DLAST_INT_TYPE=size_t -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o SegmentPair.o8 SegmentPair.cc
g++ -DLAST_INT_TYPE=size_t -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o SegmentPairPot.o8 SegmentPairPot.cc
g++ -DLAST_INT_TYPE=size_t -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o SubsetSuffixArraySearch.o8 SubsetSuffixArraySearch.cc
g++ -DLAST_INT_TYPE=size_t -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o lastal.o8 lastal.cc
g++ -DLAST_INT_TYPE=size_t -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o split/cbrc_split_aligner.o8 split/cbrc_split_aligner.cc
g++ -DLAST_INT_TYPE=size_t -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o split/last-split.o8 split/last-split.cc
split/cbrc_split_aligner.cc: In member function 'void cbrc::SplitAligner::initSpliceSignals(unsigned int)':
split/cbrc_split_aligner.cc:853:14: warning: comparison of integer expressions of different signedness: 'const unsigned int' and 'int' [-Wsign-compare]
853 | if (a.rend > chromEnd - chromBeg)
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~
In file included from ../debian/include/simde/x86/../simde-common.h:27,
from ../debian/include/simde/x86/mmx.h:28,
from ../debian/include/simde/x86/sse.h:32,
from ../debian/include/simde/x86/sse2.h:34,
from ../debian/include/simde/x86/sse3.h:28,
from ../debian/include/simde/x86/ssse3.h:28,
from ../debian/include/simde/x86/sse4.1.h:28,
from ../debian/include/simde/x86/avx2.h:26,
from mcf_simd.hh:7,
from GappedXdropAligner.hh:50,
from Centroid.hh:6,
from lastal.cc:15:
../debian/include/simde/x86/avx.h: In function 'simde__m256d simde_mm256_load_pd(const double*)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'const double*' to 'const simde__m256d*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:2992:8: note: in expansion of macro 'SIMDE_CAST_ALIGN'
2992 | r = *SIMDE_CAST_ALIGN(32, simde__m256d const*, a);
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'simde__m256 simde_mm256_load_ps(const float*)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'const float*' to 'const simde__m256*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:3011:8: note: in expansion of macro 'SIMDE_CAST_ALIGN'
3011 | r = *SIMDE_CAST_ALIGN(32, simde__m256 const*, a);
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'void simde_mm256_store_ps(simde_float32*, simde__m256)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'simde_float32*' {aka 'float*'} to 'simde__m256*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:4214:4: note: in expansion of macro 'SIMDE_CAST_ALIGN'
4214 | *SIMDE_CAST_ALIGN(32, simde__m256*, mem_addr) = a;
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'void simde_mm256_store_pd(simde_float64*, simde__m256d)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'simde_float64*' {aka 'double*'} to 'simde__m256d*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:4229:4: note: in expansion of macro 'SIMDE_CAST_ALIGN'
4229 | *SIMDE_CAST_ALIGN(32, simde__m256d*, mem_addr) = a;
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'void simde_mm256_stream_ps(simde_float32*, simde__m256)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'simde_float32*' {aka 'float*'} to 'simde__m256*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:4328:4: note: in expansion of macro 'SIMDE_CAST_ALIGN'
4328 | *SIMDE_CAST_ALIGN(32, simde__m256*, mem_addr) = a;
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'void simde_mm256_stream_pd(simde_float64*, simde__m256d)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'simde_float64*' {aka 'double*'} to 'simde__m256d*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:4343:4: note: in expansion of macro 'SIMDE_CAST_ALIGN'
4343 | *SIMDE_CAST_ALIGN(32, simde__m256d*, mem_addr) = a;
| ^~~~~~~~~~~~~~~~
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o LastdbArguments.o LastdbArguments.cc
In file included from /usr/include/c++/9/vector:72,
from split/cbrc_unsplit_alignment.hh:12,
from split/cbrc_split_aligner.hh:7,
from split/cbrc_split_aligner.cc:4:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from split/cbrc_unsplit_alignment.hh:12,
from split/cbrc_split_aligner.hh:7,
from split/cbrc_split_aligner.cc:4:
/usr/include/c++/9/bits/stl_vector.h: In member function 'std::vector<double> cbrc::SplitAligner::marginalProbs(unsigned int, unsigned int, unsigned int, unsigned int) const':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -Wl,-z,relro -Wl,-z,now -pthread -o lastal Alphabet.o CyclicSubsetSeed.o LambdaCalculator.o ScoreMatrix.o SubsetMinimizerFinder.o TantanMasker.o fileMap.o tantan.o LastalArguments.o GappedXdropAligner.o GappedXdropAlignerDna.o GappedXdropAlignerPssm.o GappedXdropAligner2qual.o GappedXdropAligner3frame.o mcf_gap_costs.o GeneticCode.o GreedyXdropAligner.o LastEvaluer.o OneQualityScoreMatrix.o QualityPssmMaker.o TwoQualityScoreMatrix.o gaplessXdrop.o gaplessPssmXdrop.o gaplessTwoQualityXdrop.o cbrc_linalg.o mcf_substitution_matrix_stats.o alp/sls_alignment_evaluer.o alp/sls_pvalues.o alp/sls_alp_sim.o alp/sls_alp_regression.o alp/sls_alp_data.o alp/sls_alp.o alp/sls_basic.o alp/njn_localmaxstatmatrix.o alp/njn_localmaxstat.o alp/njn_localmaxstatutil.o alp/njn_dynprogprob.o alp/njn_dynprogprobproto.o alp/njn_dynprogproblim.o alp/njn_ioutil.o alp/njn_random.o alp/sls_falp_alignment_evaluer.o alp/sls_fsa1_pvalues.o alp/sls_fsa1_utils.o alp/sls_fsa1.o alp/sls_fsa1_parameters.o Alignment.o AlignmentPot.o AlignmentWrite.o Centroid.o DiagonalTable.o MultiSequence.o MultiSequenceQual.o SegmentPair.o SegmentPairPot.o SubsetSuffixArray.o SubsetSuffixArraySearch.o lastal.o -lz
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -Wl,-z,relro -Wl,-z,now -pthread -o last-split Alphabet.o LambdaCalculator.o fileMap.o cbrc_linalg.o mcf_substitution_matrix_stats.o split/cbrc_unsplit_alignment.o split/last-split-main.o MultiSequence.o split/cbrc_split_aligner.o split/last-split.o
cc -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -pthread -o last-merge-batches last-merge-batches.o
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -Wl,-z,relro -Wl,-z,now -pthread -o last-pair-probs last-pair-probs.o last-pair-probs-main.o -lz
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -Wl,-z,relro -Wl,-z,now -pthread -o lastdb8 Alphabet.o CyclicSubsetSeed.o LambdaCalculator.o ScoreMatrix.o SubsetMinimizerFinder.o TantanMasker.o fileMap.o cbrc_linalg.o mcf_substitution_matrix_stats.o tantan.o LastdbArguments.o MultiSequence.o8 MultiSequenceQual.o8 SubsetSuffixArray.o8 SubsetSuffixArraySort.o8 lastdb.o8 -lz
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -Wl,-z,relro -Wl,-z,now -pthread -o lastdb Alphabet.o CyclicSubsetSeed.o LambdaCalculator.o ScoreMatrix.o SubsetMinimizerFinder.o TantanMasker.o fileMap.o cbrc_linalg.o mcf_substitution_matrix_stats.o tantan.o LastdbArguments.o MultiSequence.o MultiSequenceQual.o SubsetSuffixArray.o SubsetSuffixArraySort.o lastdb.o -lz
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -Wl,-z,relro -Wl,-z,now -pthread -o last-split8 Alphabet.o LambdaCalculator.o fileMap.o cbrc_linalg.o mcf_substitution_matrix_stats.o split/cbrc_unsplit_alignment.o split/last-split-main.o MultiSequence.o8 split/cbrc_split_aligner.o8 split/last-split.o8
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -Wl,-z,relro -Wl,-z,now -pthread -o lastal8 Alphabet.o CyclicSubsetSeed.o LambdaCalculator.o ScoreMatrix.o SubsetMinimizerFinder.o TantanMasker.o fileMap.o tantan.o LastalArguments.o GappedXdropAligner.o GappedXdropAlignerDna.o GappedXdropAlignerPssm.o GappedXdropAligner2qual.o GappedXdropAligner3frame.o mcf_gap_costs.o GeneticCode.o GreedyXdropAligner.o LastEvaluer.o OneQualityScoreMatrix.o QualityPssmMaker.o TwoQualityScoreMatrix.o gaplessXdrop.o gaplessPssmXdrop.o gaplessTwoQualityXdrop.o cbrc_linalg.o mcf_substitution_matrix_stats.o alp/sls_alignment_evaluer.o alp/sls_pvalues.o alp/sls_alp_sim.o alp/sls_alp_regression.o alp/sls_alp_data.o alp/sls_alp.o alp/sls_basic.o alp/njn_localmaxstatmatrix.o alp/njn_localmaxstat.o alp/njn_localmaxstatutil.o alp/njn_dynprogprob.o alp/njn_dynprogprobproto.o alp/njn_dynprogproblim.o alp/njn_ioutil.o alp/njn_random.o alp/sls_falp_alignment_evaluer.o alp/sls_fsa1_pvalues.o alp/sls_fsa1_utils.o alp/sls_fsa1.o alp/sls_fsa1_parameters.o Alignment.o8 AlignmentPot.o8 AlignmentWrite.o8 Centroid.o8 DiagonalTable.o8 MultiSequence.o8 MultiSequenceQual.o8 SegmentPair.o8 SegmentPairPot.o8 SubsetSuffixArray.o8 SubsetSuffixArraySearch.o8 lastal.o8 -lz
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_test -a
create-stamp debian/debhelper-build-stamp
dh_testroot -a
dh_prep -a
debian/rules override_dh_auto_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
/usr/bin/make -j4 install prefix=/<<PKGBUILDDIR>>/debian/last-align/usr
make[2]: Entering directory '/<<PKGBUILDDIR>>'
make[2]: warning: -j4 forced in submake: resetting jobserver mode.
make[3]: Entering directory '/<<PKGBUILDDIR>>/src'
if test -e ../.hg ; \
then echo \"`hg id -n`\" | cmp -s version.hh - || echo \"`hg id -n`\" > version.hh ; \
elif test -e ../.hg_archival.txt ; \
then echo \"`grep latesttagdistance ../.hg_archival.txt | cut -d' ' -f2`\" | cmp -s version.hh - || echo \"`grep latesttagdistance ../.hg_archival.txt | cut -d' ' -f2`\" > version.hh ; \
else test -e version.hh || echo \"UNKNOWN\" > version.hh ; \
fi
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src'
mkdir -p /<<PKGBUILDDIR>>/debian/last-align/usr/bin
cp scripts/* /<<PKGBUILDDIR>>/debian/last-align/usr/bin
cp src/lastdb src/lastal src/last-split src/last-merge-batches src/last-pair-probs src/lastdb8 src/lastal8 src/last-split8 /<<PKGBUILDDIR>>/debian/last-align/usr/bin
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installdocs -a
debian/rules override_dh_installchangelogs
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_installchangelogs ChangeLog.txt
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installexamples -a
debian/rules override_dh_installman
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_installman
help2man --no-info --version-string="1060" \
--name='make a dotplot, a.k.a. Oxford Grid, of alignments in LAST tabular format' \
/<<PKGBUILDDIR>>/scripts/last-dotplot > /<<PKGBUILDDIR>>/debian/last-align/usr/share/man/man1/last-dotplot.1
help2man --no-info --version-string="1060" \
--name="genome-scale comparison of biological sequences" \
--help-option="-h" \
/<<PKGBUILDDIR>>/debian/last-align/usr/bin/lastal > /<<PKGBUILDDIR>>/debian/last-align/usr/share/man/man1/lastal.1
help2man --no-info --version-string="1060" \
--name="genome-scale comparison of biological sequences" \
--help-option="-h" \
/<<PKGBUILDDIR>>/debian/last-align/usr/bin/lastal8 > /<<PKGBUILDDIR>>/debian/last-align/usr/share/man/man1/lastal8.1
#help2man --no-info --version-string="1060" \
# --name="genome-scale comparison of biological sequences" \
# --help-option="-h" \
# /<<PKGBUILDDIR>>/debian/last-align/usr/bin/lastdb > /<<PKGBUILDDIR>>/debian/last-align/usr/share/man/man1/lastdb.1
help2man --no-info --version-string="1060" \
--name="Sort MAF-format alignments by sequence name" \
/<<PKGBUILDDIR>>/scripts/maf-sort > /<<PKGBUILDDIR>>/debian/last-align/usr/share/man/man1/maf-sort.1
help2man --no-info --version-string="1060" \
--name="changes the order of the sequences in MAF-format alignments" \
/<<PKGBUILDDIR>>/scripts/maf-swap > /<<PKGBUILDDIR>>/debian/last-align/usr/share/man/man1/maf-swap.1
#help2man --no-info --version-string="1060" \
# --name="Add extra column with mapping probabilities" \
# /<<PKGBUILDDIR>>/scripts/last-map-probs > /<<PKGBUILDDIR>>/debian/last-align/usr/share/man/man1/last-map-probs.1
# This script has not enough to put in a manual page.
#help2man --no-info --version-string="1060" \
# --name="Read files of lastal output, merge corresponding batches, and write them." \
# /<<PKGBUILDDIR>>/scripts/last-merge-batches > /<<PKGBUILDDIR>>/debian/last-align/usr/share/man/man1/last-merge-batches.1
#help2man --no-info --version-string="1060" \
# --name="Clean up MAF-format alignments" \
# /<<PKGBUILDDIR>>/scripts/last-reduce-alignments > /<<PKGBUILDDIR>>/debian/last-align/usr/share/man/man1/last-reduce-alignments.1
#help2man --no-info --version-string="1060" \
# --name='Remove MAF-format alignments which are "dominated" by others' \
# /<<PKGBUILDDIR>>/scripts/last-remove-dominated > /<<PKGBUILDDIR>>/debian/last-align/usr/share/man/man1/last-remove-dominated.1
help2man --no-info --version-string="1060" \
--name='Estimates "split" or "spliced" alignments.' \
/<<PKGBUILDDIR>>/debian/last-align/usr/bin/last-split > /<<PKGBUILDDIR>>/debian/last-align/usr/share/man/man1/last-split.1
help2man --no-info --version-string="1060" \
--name='Estimates "split" or "spliced" alignments.' \
/<<PKGBUILDDIR>>/debian/last-align/usr/bin/last-split8 > /<<PKGBUILDDIR>>/debian/last-align/usr/share/man/man1/last-split8.1
help2man --no-info --version-string="1060" \
--name="Join two or more sets of MAF-format multiple alignments" \
/<<PKGBUILDDIR>>/scripts/maf-join > /<<PKGBUILDDIR>>/debian/last-align/usr/share/man/man1/maf-join.1
help2man --no-info --version-string="1060" \
--name="Convert MAF-format alignments to tabular format" \
/<<PKGBUILDDIR>>/scripts/maf-convert > /<<PKGBUILDDIR>>/debian/last-align/usr/share/man/man1/maf-convert.1
help2man --no-info --version-string="1060" \
--name="Read 2 fastq files, and write them interleaved" \
/<<PKGBUILDDIR>>/scripts/fastq-interleave > /<<PKGBUILDDIR>>/debian/last-align/usr/share/man/man1/fastq-interleave.1
help2man --no-info --version-string="1060" \
--name="Read files of lastal output, merge corresponding batches, and write them" \
/<<PKGBUILDDIR>>/debian/last-align/usr/bin/last-merge-batches > /<<PKGBUILDDIR>>/debian/last-align/usr/share/man/man1/last-merge-batches.1
#help2man --no-info --version-string="1060" \
# --name="Read alignments of paired DNA reads to a genome, and do estimations" \
# /<<PKGBUILDDIR>>/debian/last-align/usr/bin/last-pair-probs > /<<PKGBUILDDIR>>/debian/last-align/usr/share/man/man1/last-pair-probs.1
help2man --no-info --version-string="1060" \
--name="Get alignments that have a segment with score >= threshold, with gentle masking of lowercase letters" \
/<<PKGBUILDDIR>>/scripts/last-postmask > /<<PKGBUILDDIR>>/debian/last-align/usr/share/man/man1/last-postmask.1
help2man --no-info --version-string="1060" \
--name="Try to find suitable score parameters for aligning the given sequences" \
/<<PKGBUILDDIR>>/scripts/last-train > /<<PKGBUILDDIR>>/debian/last-align/usr/share/man/man1/last-train.1
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
dh_fixperms -a
dh_missing -a
dh_dwz -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dpkg-shlibdeps: warning: debian/last-align/usr/bin/last-split contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/last-align/usr/bin/lastdb contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/last-align/usr/bin/lastal8 contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/last-align/usr/bin/last-split8 contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/last-align/usr/bin/lastal contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/last-align/usr/bin/lastdb8 contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/last-align/usr/bin/last-pair-probs contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/last-align/usr/bin/last-split debian/last-align/usr/bin/lastdb debian/last-align/usr/bin/lastal8 debian/last-align/usr/bin/last-split8 debian/last-align/usr/bin/last-merge-batches debian/last-align/usr/bin/lastal debian/last-align/usr/bin/lastdb8 debian/last-align/usr/bin/last-pair-probs were not linked against ld-linux-armhf.so.3 (they use none of the library's symbols)
dh_installdeb -a
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'last-align' in '../last-align_1060-1_armhf.deb'.
dpkg-deb: building package 'last-align-dbgsym' in '../last-align-dbgsym_1060-1_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> >../last-align_1060-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2020-03-27T19:22:41Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
last-align_1060-1_armhf.changes:
--------------------------------
Format: 1.8
Date: Tue, 24 Mar 2020 21:22:27 +0100
Source: last-align
Binary: last-align last-align-dbgsym
Architecture: armhf
Version: 1060-1
Distribution: bullseye-staging
Urgency: medium
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Steffen Moeller <moeller@debian.org>
Description:
last-align - genome-scale comparison of biological sequences
Changes:
last-align (1060-1) unstable; urgency=medium
.
* Team upload.
* New upstream version
* Standards-Version: 4.5.0 (routine-update)
* Add salsa-ci file (routine-update)
* Rules-Requires-Root: no (routine-update)
* Cleaner clean
Checksums-Sha1:
757ac9d87ad97a1797e7c4de7232831610df9ba1 8216080 last-align-dbgsym_1060-1_armhf.deb
0d86c783e57ec2e7bb5e2d136ef641bf6b59e9bf 5494 last-align_1060-1_armhf.buildinfo
998e06bd23fe154d4a15f817aa022c68f0dc0e84 630900 last-align_1060-1_armhf.deb
Checksums-Sha256:
f77bcc96d6ca362317bb07b025c95c0c59d9c1bbc00134f4835670fed665ae6b 8216080 last-align-dbgsym_1060-1_armhf.deb
282c9deee45d9c0f287b256274827dbaec2882c6f57fc04a9550c426736a2bf2 5494 last-align_1060-1_armhf.buildinfo
6a0499a644572b5359a9886dc7b8fac33c86c4a7c40b56130b703fa85aa0cb2e 630900 last-align_1060-1_armhf.deb
Files:
33a5816bf3bf4c8f36094cde8b7b8635 8216080 debug optional last-align-dbgsym_1060-1_armhf.deb
4216d8170f870e95a6f293f01aa947ce 5494 science optional last-align_1060-1_armhf.buildinfo
c82431909ddad4d11c6c4a422c98ca56 630900 science optional last-align_1060-1_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
last-align-dbgsym_1060-1_armhf.deb
----------------------------------
new Debian package, version 2.0.
size 8216080 bytes: control archive=956 bytes.
669 bytes, 12 lines control
938 bytes, 9 lines md5sums
Package: last-align-dbgsym
Source: last-align
Version: 1060-1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 10344
Depends: last-align (= 1060-1)
Section: debug
Priority: optional
Description: debug symbols for last-align
Build-Ids: 194eab4863d13ca64988b2ea48760fcef4e485f8 33d442e6dc5c5f80256789b1c5f4c53d51700653 563df7a41e58429c5abbb92b1d16b1262aa4380a 5dbb5b992eb8c9d89c36b47c910dcd2f649f97c1 68ad41932ff5f3049f7c61da66f4b576fb5549c7 7641a883e1e3d1c010486a9b8c7d61e667b52cba 8957a71184b75c7d9c9b720dcf993ba9a07365fc 9b2bd623f732eea805147ff2c4a810eff04c7909
drwxr-xr-x root/root 0 2020-03-24 20:22 ./
drwxr-xr-x root/root 0 2020-03-24 20:22 ./usr/
drwxr-xr-x root/root 0 2020-03-24 20:22 ./usr/lib/
drwxr-xr-x root/root 0 2020-03-24 20:22 ./usr/lib/debug/
drwxr-xr-x root/root 0 2020-03-24 20:22 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2020-03-24 20:22 ./usr/lib/debug/.build-id/19/
-rw-r--r-- root/root 9256 2020-03-24 20:22 ./usr/lib/debug/.build-id/19/4eab4863d13ca64988b2ea48760fcef4e485f8.debug
drwxr-xr-x root/root 0 2020-03-24 20:22 ./usr/lib/debug/.build-id/33/
-rw-r--r-- root/root 651276 2020-03-24 20:22 ./usr/lib/debug/.build-id/33/d442e6dc5c5f80256789b1c5f4c53d51700653.debug
drwxr-xr-x root/root 0 2020-03-24 20:22 ./usr/lib/debug/.build-id/56/
-rw-r--r-- root/root 856128 2020-03-24 20:22 ./usr/lib/debug/.build-id/56/3df7a41e58429c5abbb92b1d16b1262aa4380a.debug
drwxr-xr-x root/root 0 2020-03-24 20:22 ./usr/lib/debug/.build-id/5d/
-rw-r--r-- root/root 856156 2020-03-24 20:22 ./usr/lib/debug/.build-id/5d/bb5b992eb8c9d89c36b47c910dcd2f649f97c1.debug
drwxr-xr-x root/root 0 2020-03-24 20:22 ./usr/lib/debug/.build-id/68/
-rw-r--r-- root/root 3127208 2020-03-24 20:22 ./usr/lib/debug/.build-id/68/ad41932ff5f3049f7c61da66f4b576fb5549c7.debug
drwxr-xr-x root/root 0 2020-03-24 20:22 ./usr/lib/debug/.build-id/76/
-rw-r--r-- root/root 276876 2020-03-24 20:22 ./usr/lib/debug/.build-id/76/41a883e1e3d1c010486a9b8c7d61e667b52cba.debug
drwxr-xr-x root/root 0 2020-03-24 20:22 ./usr/lib/debug/.build-id/89/
-rw-r--r-- root/root 651276 2020-03-24 20:22 ./usr/lib/debug/.build-id/89/57a71184b75c7d9c9b720dcf993ba9a07365fc.debug
drwxr-xr-x root/root 0 2020-03-24 20:22 ./usr/lib/debug/.build-id/9b/
-rw-r--r-- root/root 3127248 2020-03-24 20:22 ./usr/lib/debug/.build-id/9b/2bd623f732eea805147ff2c4a810eff04c7909.debug
drwxr-xr-x root/root 0 2020-03-24 20:22 ./usr/lib/debug/.dwz/
drwxr-xr-x root/root 0 2020-03-24 20:22 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/
-rw-r--r-- root/root 1010808 2020-03-24 20:22 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/last-align.debug
drwxr-xr-x root/root 0 2020-03-24 20:22 ./usr/share/
drwxr-xr-x root/root 0 2020-03-24 20:22 ./usr/share/doc/
lrwxrwxrwx root/root 0 2020-03-24 20:22 ./usr/share/doc/last-align-dbgsym -> last-align
last-align_1060-1_armhf.deb
---------------------------
new Debian package, version 2.0.
size 630900 bytes: control archive=3564 bytes.
1184 bytes, 24 lines control
7299 bytes, 103 lines md5sums
Package: last-align
Version: 1060-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 3292
Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.5), libstdc++6 (>= 6), zlib1g (>= 1:1.1.4), parallel
Recommends: python3, python3-pil
Section: science
Priority: optional
Homepage: http://last.cbrc.jp/
Description: genome-scale comparison of biological sequences
LAST is software for comparing and aligning sequences, typically DNA or
protein sequences. LAST is similar to BLAST, but it copes better with very
large amounts of sequence data. Here are two things LAST is good at:
.
* Comparing large (e.g. mammalian) genomes.
* Mapping lots of sequence tags onto a genome.
.
The main technical innovation is that LAST finds initial matches based on
their multiplicity, instead of using a fixed size (e.g. BLAST uses 10-mers).
This allows one to map tags to genomes without repeat-masking, without becoming
overwhelmed by repetitive hits. To find these variable-sized matches, it uses
a suffix array (inspired by Vmatch). To achieve high sensitivity, it uses a
discontiguous suffix array, analogous to spaced seeds.
drwxr-xr-x root/root 0 2020-03-24 20:22 ./
drwxr-xr-x root/root 0 2020-03-24 20:22 ./usr/
drwxr-xr-x root/root 0 2020-03-24 20:22 ./usr/bin/
-rwxr-xr-x root/root 518 2020-03-24 20:22 ./usr/bin/fastq-interleave
-rwxr-xr-x root/root 45050 2020-03-24 20:22 ./usr/bin/last-dotplot
-rwxr-xr-x root/root 5068 2020-03-24 20:22 ./usr/bin/last-map-probs
-rwxr-xr-x root/root 5772 2020-03-24 20:22 ./usr/bin/last-merge-batches
-rwxr-xr-x root/root 59184 2020-03-24 20:22 ./usr/bin/last-pair-probs
-rwxr-xr-x root/root 5549 2020-03-24 20:22 ./usr/bin/last-postmask
-rwxr-xr-x root/root 157576 2020-03-24 20:22 ./usr/bin/last-split
-rwxr-xr-x root/root 157576 2020-03-24 20:22 ./usr/bin/last-split8
-rwxr-xr-x root/root 25318 2020-03-24 20:22 ./usr/bin/last-train
-rwxr-xr-x root/root 878068 2020-03-24 20:22 ./usr/bin/lastal
-rwxr-xr-x root/root 878068 2020-03-24 20:22 ./usr/bin/lastal8
-rwxr-xr-x root/root 181960 2020-03-24 20:22 ./usr/bin/lastdb
-rwxr-xr-x root/root 181960 2020-03-24 20:22 ./usr/bin/lastdb8
-rwxr-xr-x root/root 29021 2020-03-24 20:22 ./usr/bin/maf-convert
-rwxr-xr-x root/root 4373 2020-03-24 20:22 ./usr/bin/maf-cut
-rwxr-xr-x root/root 9216 2020-03-24 20:22 ./usr/bin/maf-join
-rwxr-xr-x root/root 2027 2020-03-24 20:22 ./usr/bin/maf-sort
-rwxr-xr-x root/root 4947 2020-03-24 20:22 ./usr/bin/maf-swap
-rwxr-xr-x root/root 234 2020-03-24 20:22 ./usr/bin/parallel-fasta
-rwxr-xr-x root/root 295 2020-03-24 20:22 ./usr/bin/parallel-fastq
drwxr-xr-x root/root 0 2020-03-24 20:22 ./usr/share/
drwxr-xr-x root/root 0 2020-03-24 20:22 ./usr/share/doc-base/
-rw-r--r-- root/root 281 2020-03-24 20:22 ./usr/share/doc-base/last-align-manual
-rw-r--r-- root/root 291 2020-03-24 20:22 ./usr/share/doc-base/last-align-scripts
-rw-r--r-- root/root 295 2020-03-24 20:22 ./usr/share/doc-base/last-align-seeds
drwxr-xr-x root/root 0 2020-03-24 20:22 ./usr/share/doc/
drwxr-xr-x root/root 0 2020-03-24 20:22 ./usr/share/doc/last-align/
-rw-r--r-- root/root 12338 2018-12-26 07:28 ./usr/share/doc/last-align/FAQ.html
-rw-r--r-- root/root 2947 2015-12-16 10:25 ./usr/share/doc/last-align/FAQ.txt
-rw-r--r-- root/root 926 2018-12-26 07:28 ./usr/share/doc/last-align/Makefile
-rw-r--r-- root/root 201 2020-03-24 20:22 ./usr/share/doc/last-align/NEWS.Debian.gz
-rw-r--r-- root/root 179 2020-03-24 20:22 ./usr/share/doc/last-align/README.test
-rw-r--r-- root/root 10092 2018-12-26 07:28 ./usr/share/doc/last-align/bisulfite.html
-rw-r--r-- root/root 2719 2016-03-11 07:47 ./usr/share/doc/last-align/bisulfite.txt
-rw-r--r-- root/root 5613 2020-03-24 20:22 ./usr/share/doc/last-align/changelog.Debian.gz
-rw-r--r-- root/root 37587 2020-03-16 05:28 ./usr/share/doc/last-align/changelog.gz
-rw-r--r-- root/root 1119 2020-03-24 20:22 ./usr/share/doc/last-align/copyright
drwxr-xr-x root/root 0 2020-03-24 20:22 ./usr/share/doc/last-align/examples/
-rw-r--r-- root/root 17124 2013-05-23 00:23 ./usr/share/doc/last-align/examples/chickenMito.fa
-rw-r--r-- root/root 16786 2013-05-23 00:23 ./usr/share/doc/last-align/examples/fuguMito.fa
-rw-r--r-- root/root 16914 2013-05-23 00:23 ./usr/share/doc/last-align/examples/humanMito.fa
-rwxr-xr-x root/root 1488 2016-09-01 09:26 ./usr/share/doc/last-align/examples/last-bisulfite-paired.sh
-rwxr-xr-x root/root 907 2016-09-01 09:26 ./usr/share/doc/last-align/examples/last-bisulfite.sh
-rw-r--r-- root/root 16636 2013-05-23 00:23 ./usr/share/doc/last-align/examples/mouseMito.fa
-rw-r--r-- root/root 133732 2019-12-16 04:31 ./usr/share/doc/last-align/examples/multiMito.maf
-rwxr-xr-x root/root 964 2014-10-07 11:04 ./usr/share/doc/last-align/examples/multiMito.sh
-rw-r--r-- root/root 28889 2015-01-30 10:22 ./usr/share/doc/last-align/examples/myalns.maf
-rw-r--r-- root/root 712 2013-05-23 00:23 ./usr/share/doc/last-align/examples/titv212.mat
-rw-r--r-- root/root 408 2015-09-18 09:28 ./usr/share/doc/last-align/examples/ublast.seed
-rw-r--r-- root/root 539 2013-05-23 00:23 ./usr/share/doc/last-align/examples/vertebrateMito.gc
-rw-r--r-- root/root 260 2015-09-18 09:28 ./usr/share/doc/last-align/last-doc.css
-rw-r--r-- root/root 20834 2019-08-21 05:33 ./usr/share/doc/last-align/last-dotplot.html
-rw-r--r-- root/root 2893 2019-08-21 05:33 ./usr/share/doc/last-align/last-dotplot.txt.gz
-rw-r--r-- root/root 12640 2019-10-09 10:31 ./usr/share/doc/last-align/last-evalues.html
-rw-r--r-- root/root 1928 2019-10-09 10:31 ./usr/share/doc/last-align/last-evalues.txt.gz
-rw-r--r-- root/root 10452 2018-12-26 07:28 ./usr/share/doc/last-align/last-map-probs.html
-rw-r--r-- root/root 2687 2016-09-01 09:26 ./usr/share/doc/last-align/last-map-probs.txt
-rw-r--r-- root/root 21469 2019-10-09 10:32 ./usr/share/doc/last-align/last-matrices.html
-rw-r--r-- root/root 3701 2019-10-09 10:31 ./usr/share/doc/last-align/last-matrices.txt.gz
-rw-r--r-- root/root 14658 2018-12-26 07:28 ./usr/share/doc/last-align/last-pair-probs.html
-rw-r--r-- root/root 2145 2016-09-01 09:26 ./usr/share/doc/last-align/last-pair-probs.txt.gz
-rw-r--r-- root/root 12854 2018-12-26 07:28 ./usr/share/doc/last-align/last-papers.html
-rw-r--r-- root/root 2310 2018-09-05 11:49 ./usr/share/doc/last-align/last-papers.txt.gz
-rw-r--r-- root/root 9811 2018-12-26 07:28 ./usr/share/doc/last-align/last-parallel.html
-rw-r--r-- root/root 2546 2018-12-26 07:28 ./usr/share/doc/last-align/last-parallel.txt
-rw-r--r-- root/root 7807 2018-12-26 07:29 ./usr/share/doc/last-align/last-postmask.html
-rw-r--r-- root/root 998 2014-10-07 11:04 ./usr/share/doc/last-align/last-postmask.txt
-rw-r--r-- root/root 9531 2018-12-26 07:29 ./usr/share/doc/last-align/last-repeats.html
-rw-r--r-- root/root 2373 2015-08-03 07:16 ./usr/share/doc/last-align/last-repeats.txt
-rw-r--r-- root/root 1472 2015-10-27 09:33 ./usr/share/doc/last-align/last-scripts.txt
-rw-r--r-- root/root 11037 2018-12-26 07:29 ./usr/share/doc/last-align/last-seeds.html
-rw-r--r-- root/root 3385 2015-09-18 09:29 ./usr/share/doc/last-align/last-seeds.txt
-rw-r--r-- root/root 22037 2019-07-16 00:02 ./usr/share/doc/last-align/last-split.html
-rw-r--r-- root/root 3871 2019-07-16 00:01 ./usr/share/doc/last-align/last-split.txt.gz
-rw-r--r-- root/root 18661 2019-11-29 04:12 ./usr/share/doc/last-align/last-train.html
-rw-r--r-- root/root 2835 2019-11-29 04:12 ./usr/share/doc/last-align/last-train.txt.gz
-rw-r--r-- root/root 13736 2018-12-26 07:29 ./usr/share/doc/last-align/last-tuning.html
-rw-r--r-- root/root 2303 2018-05-07 01:54 ./usr/share/doc/last-align/last-tuning.txt.gz
-rw-r--r-- root/root 20648 2019-07-16 00:02 ./usr/share/doc/last-align/last-tutorial.html
-rw-r--r-- root/root 3726 2019-07-16 00:01 ./usr/share/doc/last-align/last-tutorial.txt.gz
-rw-r--r-- root/root 11066 2018-12-26 07:29 ./usr/share/doc/last-align/last.html
-rw-r--r-- root/root 3319 2017-10-06 08:41 ./usr/share/doc/last-align/last.txt
-rw-r--r-- root/root 36917 2019-11-29 04:12 ./usr/share/doc/last-align/lastal.html
-rw-r--r-- root/root 8528 2019-11-29 04:12 ./usr/share/doc/last-align/lastal.txt.gz
-rw-r--r-- root/root 18916 2018-12-26 07:29 ./usr/share/doc/last-align/lastdb.html
-rw-r--r-- root/root 3678 2018-10-30 12:22 ./usr/share/doc/last-align/lastdb.txt.gz
-rw-r--r-- root/root 12309 2018-12-26 07:29 ./usr/share/doc/last-align/maf-convert.html
-rw-r--r-- root/root 3875 2017-10-06 08:41 ./usr/share/doc/last-align/maf-convert.txt
-rw-r--r-- root/root 7380 2018-12-26 07:29 ./usr/share/doc/last-align/maf-cut.html
-rw-r--r-- root/root 521 2018-04-20 14:43 ./usr/share/doc/last-align/maf-cut.txt
-rw-r--r-- root/root 673 2020-03-24 20:22 ./usr/share/doc/last-align/run-unit-test
-rw-r--r-- root/root 2356 2014-11-17 08:17 ./usr/share/doc/last-align/tag-seeds.txt.gz
drwxr-xr-x root/root 0 2020-03-24 20:22 ./usr/share/man/
drwxr-xr-x root/root 0 2020-03-24 20:22 ./usr/share/man/man1/
-rw-r--r-- root/root 341 2020-03-24 20:22 ./usr/share/man/man1/fastq-interleave.1.gz
-rw-r--r-- root/root 1287 2020-03-24 20:22 ./usr/share/man/man1/last-dotplot.1.gz
-rw-r--r-- root/root 429 2020-03-24 20:22 ./usr/share/man/man1/last-map-probs.1.gz
-rw-r--r-- root/root 321 2020-03-24 20:22 ./usr/share/man/man1/last-merge-batches.1.gz
-rw-r--r-- root/root 637 2020-03-24 20:22 ./usr/share/man/man1/last-pair-probs.1.gz
-rw-r--r-- root/root 321 2020-03-24 20:22 ./usr/share/man/man1/last-postmask.1.gz
-rw-r--r-- root/root 755 2020-03-24 20:22 ./usr/share/man/man1/last-split.1.gz
-rw-r--r-- root/root 756 2020-03-24 20:22 ./usr/share/man/man1/last-split8.1.gz
-rw-r--r-- root/root 1073 2020-03-24 20:22 ./usr/share/man/man1/last-train.1.gz
-rw-r--r-- root/root 1715 2020-03-24 20:22 ./usr/share/man/man1/lastal.1.gz
-rw-r--r-- root/root 1718 2020-03-24 20:22 ./usr/share/man/man1/lastal8.1.gz
-rw-r--r-- root/root 795 2020-03-24 20:22 ./usr/share/man/man1/lastdb.1.gz
-rw-r--r-- root/root 607 2020-03-24 20:22 ./usr/share/man/man1/maf-convert.1.gz
-rw-r--r-- root/root 276 2020-03-24 20:22 ./usr/share/man/man1/maf-join.1.gz
-rw-r--r-- root/root 307 2020-03-24 20:22 ./usr/share/man/man1/maf-sort.1.gz
-rw-r--r-- root/root 332 2020-03-24 20:22 ./usr/share/man/man1/maf-swap.1.gz
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 121304
Build-Time: 191
Distribution: bullseye-staging
Host Architecture: armhf
Install-Time: 344
Job: last-align_1060-1
Machine Architecture: armhf
Package: last-align
Package-Time: 556
Source-Version: 1060-1
Space: 121304
Status: successful
Version: 1060-1
--------------------------------------------------------------------------------
Finished at 2020-03-27T19:22:41Z
Build needed 00:09:16, 121304k disk space