last-align →
1047-1 →
armhf → 2020-01-27 05:47:48
sbuild (Debian sbuild) 0.73.0 (23 Dec 2016) on test2019
+==============================================================================+
| last-align 1047-1 (armhf) Mon, 27 Jan 2020 05:32:00 +0000 |
+==============================================================================+
Package: last-align
Version: 1047-1
Source Version: 1047-1
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
Build Type: any
I: NOTICE: Log filtering will replace 'var/run/schroot/mount/bullseye-staging-armhf-sbuild-36245705-fd85-4264-a6d2-2dc2cb52b8ee' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [11.5 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [12.8 MB]
Fetched 24.3 MB in 24s (1008 kB/s)
Reading package lists...
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'last-align' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/last-align.git
Please use:
git clone https://salsa.debian.org/med-team/last-align.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 481 kB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main last-align 1047-1 (dsc) [2041 B]
Get:2 http://172.17.0.1/private bullseye-staging/main last-align 1047-1 (tar) [413 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main last-align 1047-1 (diff) [65.9 kB]
Fetched 481 kB in 0s (1777 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/last-align-afLOIs/last-align-1047' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/last-align-afLOIs' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-e8oQxN/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-e8oQxN/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-e8oQxN/gpg/trustdb.gpg: trustdb created
gpg: key E70254B6505CF8F7: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key E70254B6505CF8F7: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key E70254B6505CF8F7: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-e8oQxN/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-e8oQxN/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-e8oQxN/apt_archive ./ Release.gpg [370 B]
Ign:3 copy:/<<BUILDDIR>>/resolver-e8oQxN/apt_archive ./ Release.gpg
Get:4 copy:/<<BUILDDIR>>/resolver-e8oQxN/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-e8oQxN/apt_archive ./ Packages [433 B]
Fetched 2109 B in 1s (3288 B/s)
Reading package lists...
W: copy:///<<BUILDDIR>>/resolver-e8oQxN/apt_archive/./Release.gpg: The key(s) in the keyring /etc/apt/trusted.gpg.d/sbuild-build-depends-archive.gpg are ignored as the file is not readable by user '_apt' executing apt-key.
W: GPG error: copy:/<<BUILDDIR>>/resolver-e8oQxN/apt_archive ./ Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY E70254B6505CF8F7
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
libpam-cap
Use 'apt autoremove' to remove it.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 2 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-e8oQxN/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 14067 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 12), help2man, python3-pil, zlib1g-dev
Filtered Build-Depends: debhelper-compat (= 12), help2man, python3-pil, zlib1g-dev
dpkg-deb: building package 'sbuild-build-depends-last-align-dummy' in '/<<BUILDDIR>>/resolver-e8oQxN/apt_archive/sbuild-build-depends-last-align-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-last-align-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-e8oQxN/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-e8oQxN/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-e8oQxN/apt_archive ./ Release.gpg [370 B]
Ign:3 copy:/<<BUILDDIR>>/resolver-e8oQxN/apt_archive ./ Release.gpg
Get:4 copy:/<<BUILDDIR>>/resolver-e8oQxN/apt_archive ./ Sources [518 B]
Get:5 copy:/<<BUILDDIR>>/resolver-e8oQxN/apt_archive ./ Packages [598 B]
Fetched 2449 B in 1s (3902 B/s)
Reading package lists...
W: copy:///<<BUILDDIR>>/resolver-e8oQxN/apt_archive/./Release.gpg: The key(s) in the keyring /etc/apt/trusted.gpg.d/sbuild-build-depends-archive.gpg are ignored as the file is not readable by user '_apt' executing apt-key.
W: GPG error: copy:/<<BUILDDIR>>/resolver-e8oQxN/apt_archive ./ Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY E70254B6505CF8F7
Reading package lists...
Install last-align build dependencies (apt-based resolver)
----------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
libpam-cap
Use 'apt autoremove' to remove it.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
groff-base help2man intltool-debian libarchive-zip-perl libbsd0 libcroco3
libdebhelper-perl libelf1 libexpat1 libfile-stripnondeterminism-perl
libfreetype6 libglib2.0-0 libicu63 libimagequant0 libjbig0 libjpeg62-turbo
liblcms2-2 liblocale-gettext-perl libmagic-mgc libmagic1 libmpdec2
libpipeline1 libpng16-16 libpython3-stdlib libpython3.7-minimal
libpython3.7-stdlib libsigsegv2 libssl1.1 libsub-override-perl libtiff5
libtinfo5 libtool libuchardet0 libwebp6 libwebpdemux2 libwebpmux3 libxml2 m4
man-db mime-support po-debconf python3 python3-minimal python3-pil python3.7
python3.7-minimal sensible-utils zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff
liblcms2-utils libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc
apparmor less www-browser libmail-box-perl python3-doc python3-tk
python3-venv python-pil-doc python3-pil-dbg python3.7-venv python3.7-doc
binfmt-support
Recommended packages:
curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs libltdl-dev libmail-sendmail-perl python3-olefile
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
groff-base help2man intltool-debian libarchive-zip-perl libbsd0 libcroco3
libdebhelper-perl libelf1 libexpat1 libfile-stripnondeterminism-perl
libfreetype6 libglib2.0-0 libicu63 libimagequant0 libjbig0 libjpeg62-turbo
liblcms2-2 liblocale-gettext-perl libmagic-mgc libmagic1 libmpdec2
libpipeline1 libpng16-16 libpython3-stdlib libpython3.7-minimal
libpython3.7-stdlib libsigsegv2 libssl1.1 libsub-override-perl libtiff5
libtinfo5 libtool libuchardet0 libwebp6 libwebpdemux2 libwebpmux3 libxml2 m4
man-db mime-support po-debconf python3 python3-minimal python3-pil python3.7
python3.7-minimal sbuild-build-depends-last-align-dummy sensible-utils
zlib1g-dev
0 upgraded, 61 newly installed, 0 to remove and 2 not upgraded.
Need to get 26.7 MB of archives.
After this operation, 99.0 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-e8oQxN/apt_archive ./ sbuild-build-depends-last-align-dummy 0.invalid.0 [892 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf liblocale-gettext-perl armhf 1.07-4 [18.1 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf libbsd0 armhf 0.10.0-1 [112 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf libtinfo5 armhf 6.1+20191019-1 [316 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-4 [783 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.2-2 [29.6 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.0-2 [1261 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf libssl1.1 armhf 1.1.1d-2 [1268 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf libpython3.7-minimal armhf 3.7.6-1 [585 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf libexpat1 armhf 2.2.9-1 [71.5 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf python3.7-minimal armhf 3.7.6-1 [1527 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf python3-minimal armhf 3.7.5-3 [36.8 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf mime-support all 3.64 [37.8 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf libmpdec2 armhf 2.4.2-2 [67.2 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf libpython3.7-stdlib armhf 3.7.6-1 [1669 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf python3.7 armhf 3.7.6-1 [350 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf libpython3-stdlib armhf 3.7.5-3 [20.2 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf python3 armhf 3.7.5-3 [62.1 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf sensible-utils all 0.0.12+nmu1 [16.0 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.38-4 [262 kB]
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Get:24 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.38-4 [66.9 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-10 [117 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-4 [185 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11.1 [341 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.1-4 [771 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-10 [435 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-11 [547 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 12.8 [176 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.67-1 [104 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.6.3-2 [23.7 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.6.3-2 [14.7 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.176-1.1 [158 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13-5 [142 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.62.4-1 [1138 kB]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf libicu63 armhf 63.2-2 [7974 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.4+dfsg1-8 [593 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf libcroco3 armhf 0.6.13-1 [133 kB]
Get:45 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-10 [1219 kB]
Get:46 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:47 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:48 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 12.8 [1019 kB]
Get:49 http://172.17.0.1/private bullseye-staging/main armhf help2man armhf 1.47.12 [180 kB]
Get:50 http://172.17.0.1/private bullseye-staging/main armhf libpng16-16 armhf 1.6.37-1 [274 kB]
Get:51 http://172.17.0.1/private bullseye-staging/main armhf libfreetype6 armhf 2.10.1-2 [330 kB]
Get:52 http://172.17.0.1/private bullseye-staging/main armhf libimagequant0 armhf 2.12.2-1.1 [27.2 kB]
Get:53 http://172.17.0.1/private bullseye-staging/main armhf libjbig0 armhf 2.1-3.1+b2 [27.6 kB]
Get:54 http://172.17.0.1/private bullseye-staging/main armhf libjpeg62-turbo armhf 1:1.5.2-2+b1 [110 kB]
Get:55 http://172.17.0.1/private bullseye-staging/main armhf liblcms2-2 armhf 2.9-3 [116 kB]
Get:56 http://172.17.0.1/private bullseye-staging/main armhf libwebp6 armhf 0.6.1-2 [228 kB]
Get:57 http://172.17.0.1/private bullseye-staging/main armhf libtiff5 armhf 4.1.0+git191117-2 [250 kB]
Get:58 http://172.17.0.1/private bullseye-staging/main armhf libwebpdemux2 armhf 0.6.1-2 [86.7 kB]
Get:59 http://172.17.0.1/private bullseye-staging/main armhf libwebpmux3 armhf 0.6.1-2 [94.2 kB]
Get:60 http://172.17.0.1/private bullseye-staging/main armhf python3-pil armhf 6.2.1-2+b1 [396 kB]
Get:61 http://172.17.0.1/private bullseye-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-1 [206 kB]
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Setting up libglib2.0-0:armhf (2.62.4-1) ...
No schema files found: doing nothing.
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Setting up libmagic1:armhf (1:5.38-4) ...
Setting up gettext-base (0.19.8.1-10) ...
Setting up file (1:5.38-4) ...
Setting up libjbig0:armhf (2.1-3.1+b2) ...
Setting up libicu63:armhf (63.2-2) ...
Setting up autotools-dev (20180224.1) ...
Setting up libjpeg62-turbo:armhf (1:1.5.2-2+b1) ...
Setting up libsigsegv2:armhf (2.12-2) ...
Setting up libimagequant0:armhf (2.12.2-1.1) ...
Setting up libpng16-16:armhf (1.6.37-1) ...
Setting up autopoint (0.19.8.1-10) ...
Setting up libwebp6:armhf (0.6.1-2) ...
Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-1) ...
Setting up sensible-utils (0.0.12+nmu1) ...
Setting up libuchardet0:armhf (0.0.6-3) ...
Setting up libsub-override-perl (0.09-2) ...
Setting up libtiff5:armhf (4.1.0+git191117-2) ...
Setting up libmpdec2:armhf (2.4.2-2) ...
Setting up libwebpmux3:armhf (0.6.1-2) ...
Setting up libbsd0:armhf (0.10.0-1) ...
Setting up libtinfo5:armhf (6.1+20191019-1) ...
Setting up libelf1:armhf (0.176-1.1) ...
Setting up libxml2:armhf (2.9.4+dfsg1-8) ...
Setting up liblocale-gettext-perl (1.07-4) ...
Setting up libfile-stripnondeterminism-perl (1.6.3-2) ...
Setting up libpython3.7-stdlib:armhf (3.7.6-1) ...
Setting up libtool (2.4.6-11) ...
Setting up libwebpdemux2:armhf (0.6.1-2) ...
Setting up m4 (1.4.18-4) ...
Setting up help2man (1.47.12) ...
Setting up libfreetype6:armhf (2.10.1-2) ...
Setting up bsdmainutils (11.1.2) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up libcroco3:armhf (0.6.13-1) ...
Setting up autoconf (2.69-11.1) ...
Setting up dh-strip-nondeterminism (1.6.3-2) ...
Setting up dwz (0.13-5) ...
Setting up groff-base (1.22.4-4) ...
Setting up libpython3-stdlib:armhf (3.7.5-3) ...
Setting up automake (1:1.16.1-4) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up python3.7 (3.7.6-1) ...
Setting up gettext (0.19.8.1-10) ...
Setting up python3 (3.7.5-3) ...
Setting up man-db (2.9.0-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up python3-pil:armhf (6.2.1-2+b1) ...
Setting up po-debconf (1.0.21) ...
Setting up dh-autoreconf (19) ...
Setting up debhelper (12.8) ...
Setting up sbuild-build-depends-last-align-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.29-7+rpi1) ...
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.19.20-v7+ armhf (armv7l)
Toolchain package versions: binutils_2.33.1-6+rpi1 dpkg-dev_1.19.7 g++-9_9.2.1-22+rpi1 gcc-9_9.2.1-22+rpi1 libc6-dev_2.29-7+rpi1 libstdc++-9-dev_9.2.1-22+rpi1 libstdc++6_9.2.1-22+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2
Package versions: adduser_3.118 apt_1.8.4 autoconf_2.69-11.1 automake_1:1.16.1-4 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11+rpi1 base-passwd_3.5.47 bash_5.0-5 binutils_2.33.1-6+rpi1 binutils-arm-linux-gnueabihf_2.33.1-6+rpi1 binutils-common_2.33.1-6+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.34-0.1 build-essential_12.8 bzip2_1.0.8-2 coreutils_8.30-3 cpp_4:9.2.1-3.1+rpi1 cpp-9_9.2.1-22+rpi1 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.8 debianutils_4.9.1 dh-autoreconf_19 dh-strip-nondeterminism_1.6.3-2 diffutils_1:3.7-3 dirmngr_2.2.19-1 dpkg_1.19.7 dpkg-dev_1.19.7 dwz_0.13-5 e2fsprogs_1.45.5-2 fakeroot_1.24-1 fdisk_2.34-0.1 file_1:5.38-4 findutils_4.7.0-1 g++_4:9.2.1-3.1+rpi1 g++-9_9.2.1-22+rpi1 gcc_4:9.2.1-3.1+rpi1 gcc-9_9.2.1-22+rpi1 gcc-9-base_9.2.1-22+rpi1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gnupg_2.2.19-1 gnupg-l10n_2.2.19-1 gnupg-utils_2.2.19-1 gpg_2.2.19-1 gpg-agent_2.2.19-1 gpg-wks-client_2.2.19-1 gpg-wks-server_2.2.19-1 gpgconf_2.2.19-1 gpgsm_2.2.19-1 gpgv_2.2.19-1 grep_3.3-1 groff-base_1.22.4-4 gzip_1.9-3 help2man_1.47.12 hostname_3.23 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 iputils-ping_3:20190709-2 libacl1_2.2.53-5 libapt-pkg5.0_1.8.4 libarchive-zip-perl_1.67-1 libasan5_9.2.1-22+rpi1 libassuan0_2.5.3-7 libatomic1_9.2.1-22+rpi1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2 libaudit1_1:2.8.5-2+b1 libbinutils_2.33.1-6+rpi1 libblkid1_2.34-0.1 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.29-7+rpi1 libc-dev-bin_2.29-7+rpi1 libc6_2.29-7+rpi1 libc6-dev_2.29-7+rpi1 libcap-ng0_0.7.9-2.1 libcap2_1:2.27-1 libcap2-bin_1:2.27-1 libcc1-0_9.2.1-22+rpi1 libcom-err2_1.45.5-2 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.10-10+b5 libcrypt1_1:4.4.10-10+b5 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.250 libdebhelper-perl_12.8 libdpkg-perl_1.19.7 libelf1_0.176-1.1 libexpat1_2.2.9-1 libext2fs2_1.45.5-2 libfakeroot_1.24-1 libfdisk1_2.34-0.1 libffi6_3.2.1-9 libfile-stripnondeterminism-perl_1.6.3-2 libfreetype6_2.10.1-2 libgcc-9-dev_9.2.1-22+rpi1 libgcc1_1:9.2.1-22+rpi1 libgcrypt20_1.8.5-3 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libglib2.0-0_2.62.4-1 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.11.1-2 libgomp1_9.2.1-22+rpi1 libgpg-error0_1.36-7 libhogweed5_3.5.1+really3.5.1-2 libicu63_63.2-2 libidn2-0_2.2.0-2 libimagequant0_2.12.2-1.1 libisl22_0.22-2 libjbig0_2.1-3.1+b2 libjpeg62-turbo_1:1.5.2-2+b1 libksba8_1.3.5-2 liblcms2-2_2.9-3 libldap-2.4-2_2.4.48+dfsg-1+b2 libldap-common_2.4.48+dfsg-1 liblocale-gettext-perl_1.07-4 liblz4-1_1.9.2-2 liblzma5_5.2.4-1 libmagic-mgc_1:5.38-4 libmagic1_1:5.38-4 libmount1_2.34-0.1 libmpc3_1.1.0-1 libmpdec2_2.4.2-2 libmpfr6_4.0.2-1 libncursesw6_6.1+20191019-1 libnettle7_3.5.1+really3.5.1-2 libnpth0_1.6-1 libp11-kit0_0.23.18.1-2 libpam-cap_1:2.27-1 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.34-7 libpcre3_2:8.39-12 libperl5.28_5.28.1-6 libperl5.30_5.30.0-9 libpipeline1_1.5.2-2 libpng16-16_1.6.37-1 libpython3-stdlib_3.7.5-3 libpython3.7-minimal_3.7.6-1 libpython3.7-stdlib_3.7.6-1 libreadline7_7.0-5 libreadline8_8.0-3 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.4.2-2+rpi1 libselinux1_3.0-1 libsemanage-common_3.0-1 libsemanage1_3.0-1 libsepol1_3.0-1 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1 libsqlite3-0_3.30.1+fossil191229-1 libss2_1.45.5-2 libssl1.1_1.1.1d-2 libstdc++-9-dev_9.2.1-22+rpi1 libstdc++6_9.2.1-22+rpi1 libsub-override-perl_0.09-2 libsystemd0_244-3+rpi1+b1 libtasn1-6_4.15.0-2 libtiff5_4.1.0+git191117-2 libtinfo5_6.1+20191019-1 libtinfo6_6.1+20191019-1 libtool_2.4.6-11 libubsan1_9.2.1-22+rpi1 libuchardet0_0.0.6-3 libudev1_244-3+rpi1+b1 libunistring2_0.9.10-2 libuuid1_2.34-0.1 libwebp6_0.6.1-2 libwebpdemux2_0.6.1-2 libwebpmux3_0.6.1-2 libxml2_2.9.4+dfsg1-8 libzstd1_1.4.4+dfsg-1+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2 login_1:4.8-1 logsave_1.45.5-2 lsb-base_11.1.0+rpi1 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.0-2 mawk_1.3.3-17 mime-support_3.64 mount_2.34-0.1 ncurses-base_6.1+20191019-1 ncurses-bin_6.1+20191019-1 passwd_1:4.8-1 patch_2.7.6-6 perl_5.30.0-9 perl-base_5.30.0-9 perl-modules-5.28_5.28.1-6 perl-modules-5.30_5.30.0-9 pinentry-curses_1.1.0-3 po-debconf_1.0.21 python3_3.7.5-3 python3-minimal_3.7.5-3 python3-pil_6.2.1-2+b1 python3.7_3.7.6-1 python3.7-minimal_3.7.6-1 raspbian-archive-keyring_20120528.2 readline-common_8.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-last-align-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-1 tar_1.30+dfsg-6 tzdata_2019c-3 util-linux_2.34-0.1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1 zlib1g-dev_1:1.2.11.dfsg-1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Fri Jan 24 15:22:01 2020 UTC
gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./last-align_1047-1.dsc
dpkg-source: info: extracting last-align in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking last-align_1047.orig.tar.xz
dpkg-source: info: unpacking last-align_1047-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying 2to3.patch
dpkg-source: info: applying helpMakefiles.patch
dpkg-source: info: applying simde
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DBUS_SESSION_BUS_ADDRESS=unix:path=/run/user/112/bus
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
INVOCATION_ID=c605eeb4e47242eab5a84ad883abfd9b
JOURNAL_STREAM=8:18382
LANG=en_GB.UTF-8
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PWD=/
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=116
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-36245705-fd85-4264-a6d2-2dc2cb52b8ee
SCHROOT_UID=112
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
XDG_RUNTIME_DIR=/run/user/112
XDG_SESSION_ID=c18863
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package last-align
dpkg-buildpackage: info: source version 1047-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean
make -j4 clean
make[2]: Entering directory '/<<PKGBUILDDIR>>'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src'
rm -f lastdb lastal last-split last-merge-batches last-pair-probs lastdb8 lastal8 last-split8 *.o* */*.o*
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_clean
debian/rules build-arch
dh build-arch
dh_update_autotools_config -a
dh_autoreconf -a
dh_auto_configure -a
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
/usr/bin/make -j4 all CXXFLAGS="-g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3" CFLAGS="-g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP" LDFLAGS="-Wl,-z,relro -Wl,-z,now -pthread"
make[2]: Entering directory '/<<PKGBUILDDIR>>'
make[2]: warning: -j4 forced in submake: resetting jobserver mode.
make[3]: Entering directory '/<<PKGBUILDDIR>>/src'
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o Alphabet.o Alphabet.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o CyclicSubsetSeed.o CyclicSubsetSeed.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o LambdaCalculator.o LambdaCalculator.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o ScoreMatrix.o ScoreMatrix.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o SubsetMinimizerFinder.o SubsetMinimizerFinder.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o TantanMasker.o TantanMasker.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o fileMap.o fileMap.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o cbrc_linalg.o cbrc_linalg.cc
In file included from /usr/include/c++/9/vector:72,
from ScoreMatrix.hh:15,
from ScoreMatrix.cc:3:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from ScoreMatrix.hh:15,
from ScoreMatrix.cc:3:
/usr/include/c++/9/bits/stl_vector.h: In function 'std::istream& cbrc::operator>>(std::istream&, cbrc::ScoreMatrix&)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o mcf_substitution_matrix_stats.o mcf_substitution_matrix_stats.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o tantan.o tantan.cc
if test -e ../.hg ; \
then echo \"`hg id -n`\" | cmp -s version.hh - || echo \"`hg id -n`\" > version.hh ; \
elif test -e ../.hg_archival.txt ; \
then echo \"`grep latesttagdistance ../.hg_archival.txt | cut -d' ' -f2`\" | cmp -s version.hh - || echo \"`grep latesttagdistance ../.hg_archival.txt | cut -d' ' -f2`\" > version.hh ; \
else test -e version.hh || echo \"UNKNOWN\" > version.hh ; \
fi
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o MultiSequence.o MultiSequence.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o MultiSequenceQual.o MultiSequenceQual.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o SubsetSuffixArray.o SubsetSuffixArray.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o SubsetSuffixArraySort.o SubsetSuffixArraySort.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o lastdb.o lastdb.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o LastalArguments.o LastalArguments.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o GappedXdropAligner.o GappedXdropAligner.cc
In file included from ../debian/include/simde/x86/sse2.h:34,
from ../debian/include/simde/x86/sse3.h:28,
from ../debian/include/simde/x86/ssse3.h:28,
from ../debian/include/simde/x86/sse4.1.h:28,
from ../debian/include/simde/x86/avx2.h:26,
from mcf_simd.hh:7,
from GappedXdropAligner.hh:50,
from GappedXdropAligner.cc:49:
../debian/include/simde/x86/sse.h: In function 'simde__m128 simde_mm_cvt_pi2ps(simde__m128, simde__m64)':
../debian/include/simde/x86/sse.h:968:47: warning: parameter 'b' set but not used [-Wunused-but-set-parameter]
968 | simde_mm_cvt_pi2ps (simde__m128 a, simde__m64 b) {
| ~~~~~~~~~~~^
../debian/include/simde/x86/sse.h: In function 'simde__m64 simde_mm_cvt_ps2pi(simde__m128)':
../debian/include/simde/x86/sse.h:991:33: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
991 | simde_mm_cvt_ps2pi (simde__m128 a) {
| ~~~~~~~~~~~~^
../debian/include/simde/x86/sse.h: In function 'simde__m128 simde_mm_cvtpi16_ps(simde__m64)':
../debian/include/simde/x86/sse.h:1046:33: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1046 | simde_mm_cvtpi16_ps (simde__m64 a) {
| ~~~~~~~~~~~^
../debian/include/simde/x86/sse.h: In function 'simde__m128 simde_mm_cvtpi32_ps(simde__m128, simde__m64)':
../debian/include/simde/x86/sse.h:1068:48: warning: parameter 'b' set but not used [-Wunused-but-set-parameter]
1068 | simde_mm_cvtpi32_ps (simde__m128 a, simde__m64 b) {
| ~~~~~~~~~~~^
../debian/include/simde/x86/sse.h: In function 'simde__m128 simde_mm_cvtpi32x2_ps(simde__m64, simde__m64)':
../debian/include/simde/x86/sse.h:1091:35: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1091 | simde_mm_cvtpi32x2_ps (simde__m64 a, simde__m64 b) {
| ~~~~~~~~~~~^
../debian/include/simde/x86/sse.h:1091:49: warning: parameter 'b' set but not used [-Wunused-but-set-parameter]
1091 | simde_mm_cvtpi32x2_ps (simde__m64 a, simde__m64 b) {
| ~~~~~~~~~~~^
../debian/include/simde/x86/sse.h: In function 'simde__m64 simde_mm_cvtps_pi16(simde__m128)':
../debian/include/simde/x86/sse.h:1134:34: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1134 | simde_mm_cvtps_pi16 (simde__m128 a) {
| ~~~~~~~~~~~~^
../debian/include/simde/x86/sse.h: In function 'simde__m64 simde_mm_cvtps_pi32(simde__m128)':
../debian/include/simde/x86/sse.h:1156:34: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1156 | simde_mm_cvtps_pi32 (simde__m128 a) {
| ~~~~~~~~~~~~^
../debian/include/simde/x86/sse.h: In function 'simde__m128 simde_mm_cvtpu16_ps(simde__m64)':
../debian/include/simde/x86/sse.h:1198:33: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1198 | simde_mm_cvtpu16_ps (simde__m64 a) {
| ~~~~~~~~~~~^
../debian/include/simde/x86/sse.h: In function 'simde__m64 simde_mm_cvtt_ps2pi(simde__m128)':
../debian/include/simde/x86/sse.h:1331:34: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1331 | simde_mm_cvtt_ps2pi (simde__m128 a) {
| ~~~~~~~~~~~~^
In file included from ../debian/include/simde/x86/sse3.h:28,
from ../debian/include/simde/x86/ssse3.h:28,
from ../debian/include/simde/x86/sse4.1.h:28,
from ../debian/include/simde/x86/avx2.h:26,
from mcf_simd.hh:7,
from GappedXdropAligner.hh:50,
from GappedXdropAligner.cc:49:
../debian/include/simde/x86/sse2.h: In function 'simde__m128d simde_mm_cvtepi32_pd(simde__m128i)':
../debian/include/simde/x86/sse2.h:1476:36: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1476 | simde_mm_cvtepi32_pd (simde__m128i a) {
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m128 simde_mm_cvtepi32_ps(simde__m128i)':
../debian/include/simde/x86/sse2.h:1498:36: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1498 | simde_mm_cvtepi32_ps (simde__m128i a) {
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m128i simde_mm_cvtpd_epi32(simde__m128d)':
../debian/include/simde/x86/sse2.h:1522:36: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1522 | simde_mm_cvtpd_epi32 (simde__m128d a) {
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m64 simde_mm_cvtpd_pi32(simde__m128d)':
../debian/include/simde/x86/sse2.h:1545:35: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1545 | simde_mm_cvtpd_pi32 (simde__m128d a) {
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m128 simde_mm_cvtpd_ps(simde__m128d)':
../debian/include/simde/x86/sse2.h:1567:33: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1567 | simde_mm_cvtpd_ps (simde__m128d a) {
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m128d simde_mm_cvtpi32_pd(simde__m64)':
../debian/include/simde/x86/sse2.h:1591:33: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1591 | simde_mm_cvtpi32_pd (simde__m64 a) {
| ~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m128i simde_mm_cvtps_epi32(simde__m128)':
../debian/include/simde/x86/sse2.h:1613:35: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1613 | simde_mm_cvtps_epi32 (simde__m128 a) {
| ~~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m128d simde_mm_cvtps_pd(simde__m128)':
../debian/include/simde/x86/sse2.h:1651:32: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1651 | simde_mm_cvtps_pd (simde__m128 a) {
| ~~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m64 simde_mm_cvttpd_pi32(simde__m128d)':
../debian/include/simde/x86/sse2.h:1899:36: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1899 | simde_mm_cvttpd_pi32 (simde__m128d a) {
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m128i simde_mm_cvttps_epi32(simde__m128)':
../debian/include/simde/x86/sse2.h:1920:36: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1920 | simde_mm_cvttps_epi32 (simde__m128 a) {
| ~~~~~~~~~~~~^
In file included from ../debian/include/simde/x86/../simde-common.h:27,
from ../debian/include/simde/x86/mmx.h:28,
from ../debian/include/simde/x86/sse.h:32,
from ../debian/include/simde/x86/sse2.h:34,
from ../debian/include/simde/x86/sse3.h:28,
from ../debian/include/simde/x86/ssse3.h:28,
from ../debian/include/simde/x86/sse4.1.h:28,
from ../debian/include/simde/x86/avx2.h:26,
from mcf_simd.hh:7,
from GappedXdropAligner.hh:50,
from GappedXdropAligner.cc:49:
../debian/include/simde/x86/avx.h: In function 'simde__m256d simde_mm256_load_pd(const double*)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'const double*' to 'const simde__m256d*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:2992:8: note: in expansion of macro 'SIMDE_CAST_ALIGN'
2992 | r = *SIMDE_CAST_ALIGN(32, simde__m256d const*, a);
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'simde__m256 simde_mm256_load_ps(const float*)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'const float*' to 'const simde__m256*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:3011:8: note: in expansion of macro 'SIMDE_CAST_ALIGN'
3011 | r = *SIMDE_CAST_ALIGN(32, simde__m256 const*, a);
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'void simde_mm256_store_ps(simde_float32*, simde__m256)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'simde_float32*' {aka 'float*'} to 'simde__m256*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:4214:4: note: in expansion of macro 'SIMDE_CAST_ALIGN'
4214 | *SIMDE_CAST_ALIGN(32, simde__m256*, mem_addr) = a;
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'void simde_mm256_store_pd(simde_float64*, simde__m256d)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'simde_float64*' {aka 'double*'} to 'simde__m256d*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:4229:4: note: in expansion of macro 'SIMDE_CAST_ALIGN'
4229 | *SIMDE_CAST_ALIGN(32, simde__m256d*, mem_addr) = a;
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'void simde_mm256_stream_ps(simde_float32*, simde__m256)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'simde_float32*' {aka 'float*'} to 'simde__m256*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:4328:4: note: in expansion of macro 'SIMDE_CAST_ALIGN'
4328 | *SIMDE_CAST_ALIGN(32, simde__m256*, mem_addr) = a;
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'void simde_mm256_stream_pd(simde_float64*, simde__m256d)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'simde_float64*' {aka 'double*'} to 'simde__m256d*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:4343:4: note: in expansion of macro 'SIMDE_CAST_ALIGN'
4343 | *SIMDE_CAST_ALIGN(32, simde__m256d*, mem_addr) = a;
| ^~~~~~~~~~~~~~~~
In file included from mcf_simd.hh:7,
from GappedXdropAligner.hh:50,
from GappedXdropAligner.cc:49:
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepi8_epi16(simde__m128i)':
../debian/include/simde/x86/avx2.h:339:41: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
339 | simde_mm256_cvtepi8_epi16 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepi8_epi32(simde__m128i)':
../debian/include/simde/x86/avx2.h:359:41: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
359 | simde_mm256_cvtepi8_epi32 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepi16_epi32(simde__m128i)':
../debian/include/simde/x86/avx2.h:397:42: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
397 | simde_mm256_cvtepi16_epi32 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepi16_epi64(simde__m128i)':
../debian/include/simde/x86/avx2.h:417:42: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
417 | simde_mm256_cvtepi16_epi64 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepi32_epi64(simde__m128i)':
../debian/include/simde/x86/avx2.h:437:42: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
437 | simde_mm256_cvtepi32_epi64 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepu8_epi16(simde__m128i)':
../debian/include/simde/x86/avx2.h:457:41: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
457 | simde_mm256_cvtepu8_epi16 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepu8_epi32(simde__m128i)':
../debian/include/simde/x86/avx2.h:477:41: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
477 | simde_mm256_cvtepu8_epi32 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepu16_epi32(simde__m128i)':
../debian/include/simde/x86/avx2.h:515:42: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
515 | simde_mm256_cvtepu16_epi32 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepu16_epi64(simde__m128i)':
../debian/include/simde/x86/avx2.h:535:42: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
535 | simde_mm256_cvtepu16_epi64 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepu32_epi64(simde__m128i)':
../debian/include/simde/x86/avx2.h:555:42: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
555 | simde_mm256_cvtepu32_epi64 (simde__m128i a){
| ~~~~~~~~~~~~~^
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o GappedXdropAlignerDna.o GappedXdropAlignerDna.cc
In file included from ../debian/include/simde/x86/sse2.h:34,
from ../debian/include/simde/x86/sse3.h:28,
from ../debian/include/simde/x86/ssse3.h:28,
from ../debian/include/simde/x86/sse4.1.h:28,
from ../debian/include/simde/x86/avx2.h:26,
from mcf_simd.hh:7,
from GappedXdropAligner.hh:50,
from GappedXdropAlignerDna.cc:4:
../debian/include/simde/x86/sse.h: In function 'simde__m128 simde_mm_cvt_pi2ps(simde__m128, simde__m64)':
../debian/include/simde/x86/sse.h:968:47: warning: parameter 'b' set but not used [-Wunused-but-set-parameter]
968 | simde_mm_cvt_pi2ps (simde__m128 a, simde__m64 b) {
| ~~~~~~~~~~~^
../debian/include/simde/x86/sse.h: In function 'simde__m64 simde_mm_cvt_ps2pi(simde__m128)':
../debian/include/simde/x86/sse.h:991:33: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
991 | simde_mm_cvt_ps2pi (simde__m128 a) {
| ~~~~~~~~~~~~^
../debian/include/simde/x86/sse.h: In function 'simde__m128 simde_mm_cvtpi16_ps(simde__m64)':
../debian/include/simde/x86/sse.h:1046:33: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1046 | simde_mm_cvtpi16_ps (simde__m64 a) {
| ~~~~~~~~~~~^
../debian/include/simde/x86/sse.h: In function 'simde__m128 simde_mm_cvtpi32_ps(simde__m128, simde__m64)':
../debian/include/simde/x86/sse.h:1068:48: warning: parameter 'b' set but not used [-Wunused-but-set-parameter]
1068 | simde_mm_cvtpi32_ps (simde__m128 a, simde__m64 b) {
| ~~~~~~~~~~~^
../debian/include/simde/x86/sse.h: In function 'simde__m128 simde_mm_cvtpi32x2_ps(simde__m64, simde__m64)':
../debian/include/simde/x86/sse.h:1091:35: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1091 | simde_mm_cvtpi32x2_ps (simde__m64 a, simde__m64 b) {
| ~~~~~~~~~~~^
../debian/include/simde/x86/sse.h:1091:49: warning: parameter 'b' set but not used [-Wunused-but-set-parameter]
1091 | simde_mm_cvtpi32x2_ps (simde__m64 a, simde__m64 b) {
| ~~~~~~~~~~~^
../debian/include/simde/x86/sse.h: In function 'simde__m64 simde_mm_cvtps_pi16(simde__m128)':
../debian/include/simde/x86/sse.h:1134:34: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1134 | simde_mm_cvtps_pi16 (simde__m128 a) {
| ~~~~~~~~~~~~^
../debian/include/simde/x86/sse.h: In function 'simde__m64 simde_mm_cvtps_pi32(simde__m128)':
../debian/include/simde/x86/sse.h:1156:34: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1156 | simde_mm_cvtps_pi32 (simde__m128 a) {
| ~~~~~~~~~~~~^
../debian/include/simde/x86/sse.h: In function 'simde__m128 simde_mm_cvtpu16_ps(simde__m64)':
../debian/include/simde/x86/sse.h:1198:33: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1198 | simde_mm_cvtpu16_ps (simde__m64 a) {
| ~~~~~~~~~~~^
../debian/include/simde/x86/sse.h: In function 'simde__m64 simde_mm_cvtt_ps2pi(simde__m128)':
../debian/include/simde/x86/sse.h:1331:34: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1331 | simde_mm_cvtt_ps2pi (simde__m128 a) {
| ~~~~~~~~~~~~^
In file included from ../debian/include/simde/x86/sse3.h:28,
from ../debian/include/simde/x86/ssse3.h:28,
from ../debian/include/simde/x86/sse4.1.h:28,
from ../debian/include/simde/x86/avx2.h:26,
from mcf_simd.hh:7,
from GappedXdropAligner.hh:50,
from GappedXdropAlignerDna.cc:4:
../debian/include/simde/x86/sse2.h: In function 'simde__m128d simde_mm_cvtepi32_pd(simde__m128i)':
../debian/include/simde/x86/sse2.h:1476:36: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1476 | simde_mm_cvtepi32_pd (simde__m128i a) {
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m128 simde_mm_cvtepi32_ps(simde__m128i)':
../debian/include/simde/x86/sse2.h:1498:36: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1498 | simde_mm_cvtepi32_ps (simde__m128i a) {
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m128i simde_mm_cvtpd_epi32(simde__m128d)':
../debian/include/simde/x86/sse2.h:1522:36: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1522 | simde_mm_cvtpd_epi32 (simde__m128d a) {
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m64 simde_mm_cvtpd_pi32(simde__m128d)':
../debian/include/simde/x86/sse2.h:1545:35: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1545 | simde_mm_cvtpd_pi32 (simde__m128d a) {
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m128 simde_mm_cvtpd_ps(simde__m128d)':
../debian/include/simde/x86/sse2.h:1567:33: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1567 | simde_mm_cvtpd_ps (simde__m128d a) {
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m128d simde_mm_cvtpi32_pd(simde__m64)':
../debian/include/simde/x86/sse2.h:1591:33: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1591 | simde_mm_cvtpi32_pd (simde__m64 a) {
| ~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m128i simde_mm_cvtps_epi32(simde__m128)':
../debian/include/simde/x86/sse2.h:1613:35: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1613 | simde_mm_cvtps_epi32 (simde__m128 a) {
| ~~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m128d simde_mm_cvtps_pd(simde__m128)':
../debian/include/simde/x86/sse2.h:1651:32: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1651 | simde_mm_cvtps_pd (simde__m128 a) {
| ~~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m64 simde_mm_cvttpd_pi32(simde__m128d)':
../debian/include/simde/x86/sse2.h:1899:36: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1899 | simde_mm_cvttpd_pi32 (simde__m128d a) {
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m128i simde_mm_cvttps_epi32(simde__m128)':
../debian/include/simde/x86/sse2.h:1920:36: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1920 | simde_mm_cvttps_epi32 (simde__m128 a) {
| ~~~~~~~~~~~~^
In file included from ../debian/include/simde/x86/../simde-common.h:27,
from ../debian/include/simde/x86/mmx.h:28,
from ../debian/include/simde/x86/sse.h:32,
from ../debian/include/simde/x86/sse2.h:34,
from ../debian/include/simde/x86/sse3.h:28,
from ../debian/include/simde/x86/ssse3.h:28,
from ../debian/include/simde/x86/sse4.1.h:28,
from ../debian/include/simde/x86/avx2.h:26,
from mcf_simd.hh:7,
from GappedXdropAligner.hh:50,
from GappedXdropAlignerDna.cc:4:
../debian/include/simde/x86/avx.h: In function 'simde__m256d simde_mm256_load_pd(const double*)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'const double*' to 'const simde__m256d*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:2992:8: note: in expansion of macro 'SIMDE_CAST_ALIGN'
2992 | r = *SIMDE_CAST_ALIGN(32, simde__m256d const*, a);
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'simde__m256 simde_mm256_load_ps(const float*)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'const float*' to 'const simde__m256*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:3011:8: note: in expansion of macro 'SIMDE_CAST_ALIGN'
3011 | r = *SIMDE_CAST_ALIGN(32, simde__m256 const*, a);
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'void simde_mm256_store_ps(simde_float32*, simde__m256)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'simde_float32*' {aka 'float*'} to 'simde__m256*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:4214:4: note: in expansion of macro 'SIMDE_CAST_ALIGN'
4214 | *SIMDE_CAST_ALIGN(32, simde__m256*, mem_addr) = a;
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'void simde_mm256_store_pd(simde_float64*, simde__m256d)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'simde_float64*' {aka 'double*'} to 'simde__m256d*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:4229:4: note: in expansion of macro 'SIMDE_CAST_ALIGN'
4229 | *SIMDE_CAST_ALIGN(32, simde__m256d*, mem_addr) = a;
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'void simde_mm256_stream_ps(simde_float32*, simde__m256)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'simde_float32*' {aka 'float*'} to 'simde__m256*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:4328:4: note: in expansion of macro 'SIMDE_CAST_ALIGN'
4328 | *SIMDE_CAST_ALIGN(32, simde__m256*, mem_addr) = a;
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'void simde_mm256_stream_pd(simde_float64*, simde__m256d)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'simde_float64*' {aka 'double*'} to 'simde__m256d*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:4343:4: note: in expansion of macro 'SIMDE_CAST_ALIGN'
4343 | *SIMDE_CAST_ALIGN(32, simde__m256d*, mem_addr) = a;
| ^~~~~~~~~~~~~~~~
In file included from mcf_simd.hh:7,
from GappedXdropAligner.hh:50,
from GappedXdropAlignerDna.cc:4:
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepi8_epi16(simde__m128i)':
../debian/include/simde/x86/avx2.h:339:41: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
339 | simde_mm256_cvtepi8_epi16 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepi8_epi32(simde__m128i)':
../debian/include/simde/x86/avx2.h:359:41: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
359 | simde_mm256_cvtepi8_epi32 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepi16_epi32(simde__m128i)':
../debian/include/simde/x86/avx2.h:397:42: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
397 | simde_mm256_cvtepi16_epi32 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepi16_epi64(simde__m128i)':
../debian/include/simde/x86/avx2.h:417:42: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
417 | simde_mm256_cvtepi16_epi64 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepi32_epi64(simde__m128i)':
../debian/include/simde/x86/avx2.h:437:42: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
437 | simde_mm256_cvtepi32_epi64 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepu8_epi16(simde__m128i)':
../debian/include/simde/x86/avx2.h:457:41: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
457 | simde_mm256_cvtepu8_epi16 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepu8_epi32(simde__m128i)':
../debian/include/simde/x86/avx2.h:477:41: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
477 | simde_mm256_cvtepu8_epi32 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepu16_epi32(simde__m128i)':
../debian/include/simde/x86/avx2.h:515:42: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
515 | simde_mm256_cvtepu16_epi32 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepu16_epi64(simde__m128i)':
../debian/include/simde/x86/avx2.h:535:42: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
535 | simde_mm256_cvtepu16_epi64 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepu32_epi64(simde__m128i)':
../debian/include/simde/x86/avx2.h:555:42: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
555 | simde_mm256_cvtepu32_epi64 (simde__m128i a){
| ~~~~~~~~~~~~~^
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o GappedXdropAlignerPssm.o GappedXdropAlignerPssm.cc
In file included from ../debian/include/simde/x86/sse2.h:34,
from ../debian/include/simde/x86/sse3.h:28,
from ../debian/include/simde/x86/ssse3.h:28,
from ../debian/include/simde/x86/sse4.1.h:28,
from ../debian/include/simde/x86/avx2.h:26,
from mcf_simd.hh:7,
from GappedXdropAligner.hh:50,
from GappedXdropAlignerPssm.cc:3:
../debian/include/simde/x86/sse.h: In function 'simde__m128 simde_mm_cvt_pi2ps(simde__m128, simde__m64)':
../debian/include/simde/x86/sse.h:968:47: warning: parameter 'b' set but not used [-Wunused-but-set-parameter]
968 | simde_mm_cvt_pi2ps (simde__m128 a, simde__m64 b) {
| ~~~~~~~~~~~^
../debian/include/simde/x86/sse.h: In function 'simde__m64 simde_mm_cvt_ps2pi(simde__m128)':
../debian/include/simde/x86/sse.h:991:33: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
991 | simde_mm_cvt_ps2pi (simde__m128 a) {
| ~~~~~~~~~~~~^
../debian/include/simde/x86/sse.h: In function 'simde__m128 simde_mm_cvtpi16_ps(simde__m64)':
../debian/include/simde/x86/sse.h:1046:33: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1046 | simde_mm_cvtpi16_ps (simde__m64 a) {
| ~~~~~~~~~~~^
../debian/include/simde/x86/sse.h: In function 'simde__m128 simde_mm_cvtpi32_ps(simde__m128, simde__m64)':
../debian/include/simde/x86/sse.h:1068:48: warning: parameter 'b' set but not used [-Wunused-but-set-parameter]
1068 | simde_mm_cvtpi32_ps (simde__m128 a, simde__m64 b) {
| ~~~~~~~~~~~^
../debian/include/simde/x86/sse.h: In function 'simde__m128 simde_mm_cvtpi32x2_ps(simde__m64, simde__m64)':
../debian/include/simde/x86/sse.h:1091:35: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1091 | simde_mm_cvtpi32x2_ps (simde__m64 a, simde__m64 b) {
| ~~~~~~~~~~~^
../debian/include/simde/x86/sse.h:1091:49: warning: parameter 'b' set but not used [-Wunused-but-set-parameter]
1091 | simde_mm_cvtpi32x2_ps (simde__m64 a, simde__m64 b) {
| ~~~~~~~~~~~^
../debian/include/simde/x86/sse.h: In function 'simde__m64 simde_mm_cvtps_pi16(simde__m128)':
../debian/include/simde/x86/sse.h:1134:34: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1134 | simde_mm_cvtps_pi16 (simde__m128 a) {
| ~~~~~~~~~~~~^
../debian/include/simde/x86/sse.h: In function 'simde__m64 simde_mm_cvtps_pi32(simde__m128)':
../debian/include/simde/x86/sse.h:1156:34: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1156 | simde_mm_cvtps_pi32 (simde__m128 a) {
| ~~~~~~~~~~~~^
../debian/include/simde/x86/sse.h: In function 'simde__m128 simde_mm_cvtpu16_ps(simde__m64)':
../debian/include/simde/x86/sse.h:1198:33: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1198 | simde_mm_cvtpu16_ps (simde__m64 a) {
| ~~~~~~~~~~~^
../debian/include/simde/x86/sse.h: In function 'simde__m64 simde_mm_cvtt_ps2pi(simde__m128)':
../debian/include/simde/x86/sse.h:1331:34: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1331 | simde_mm_cvtt_ps2pi (simde__m128 a) {
| ~~~~~~~~~~~~^
In file included from ../debian/include/simde/x86/sse3.h:28,
from ../debian/include/simde/x86/ssse3.h:28,
from ../debian/include/simde/x86/sse4.1.h:28,
from ../debian/include/simde/x86/avx2.h:26,
from mcf_simd.hh:7,
from GappedXdropAligner.hh:50,
from GappedXdropAlignerPssm.cc:3:
../debian/include/simde/x86/sse2.h: In function 'simde__m128d simde_mm_cvtepi32_pd(simde__m128i)':
../debian/include/simde/x86/sse2.h:1476:36: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1476 | simde_mm_cvtepi32_pd (simde__m128i a) {
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m128 simde_mm_cvtepi32_ps(simde__m128i)':
../debian/include/simde/x86/sse2.h:1498:36: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1498 | simde_mm_cvtepi32_ps (simde__m128i a) {
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m128i simde_mm_cvtpd_epi32(simde__m128d)':
../debian/include/simde/x86/sse2.h:1522:36: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1522 | simde_mm_cvtpd_epi32 (simde__m128d a) {
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m64 simde_mm_cvtpd_pi32(simde__m128d)':
../debian/include/simde/x86/sse2.h:1545:35: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1545 | simde_mm_cvtpd_pi32 (simde__m128d a) {
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m128 simde_mm_cvtpd_ps(simde__m128d)':
../debian/include/simde/x86/sse2.h:1567:33: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1567 | simde_mm_cvtpd_ps (simde__m128d a) {
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m128d simde_mm_cvtpi32_pd(simde__m64)':
../debian/include/simde/x86/sse2.h:1591:33: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1591 | simde_mm_cvtpi32_pd (simde__m64 a) {
| ~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m128i simde_mm_cvtps_epi32(simde__m128)':
../debian/include/simde/x86/sse2.h:1613:35: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1613 | simde_mm_cvtps_epi32 (simde__m128 a) {
| ~~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m128d simde_mm_cvtps_pd(simde__m128)':
../debian/include/simde/x86/sse2.h:1651:32: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1651 | simde_mm_cvtps_pd (simde__m128 a) {
| ~~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m64 simde_mm_cvttpd_pi32(simde__m128d)':
../debian/include/simde/x86/sse2.h:1899:36: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1899 | simde_mm_cvttpd_pi32 (simde__m128d a) {
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m128i simde_mm_cvttps_epi32(simde__m128)':
../debian/include/simde/x86/sse2.h:1920:36: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1920 | simde_mm_cvttps_epi32 (simde__m128 a) {
| ~~~~~~~~~~~~^
In file included from ../debian/include/simde/x86/../simde-common.h:27,
from ../debian/include/simde/x86/mmx.h:28,
from ../debian/include/simde/x86/sse.h:32,
from ../debian/include/simde/x86/sse2.h:34,
from ../debian/include/simde/x86/sse3.h:28,
from ../debian/include/simde/x86/ssse3.h:28,
from ../debian/include/simde/x86/sse4.1.h:28,
from ../debian/include/simde/x86/avx2.h:26,
from mcf_simd.hh:7,
from GappedXdropAligner.hh:50,
from GappedXdropAlignerPssm.cc:3:
../debian/include/simde/x86/avx.h: In function 'simde__m256d simde_mm256_load_pd(const double*)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'const double*' to 'const simde__m256d*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:2992:8: note: in expansion of macro 'SIMDE_CAST_ALIGN'
2992 | r = *SIMDE_CAST_ALIGN(32, simde__m256d const*, a);
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'simde__m256 simde_mm256_load_ps(const float*)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'const float*' to 'const simde__m256*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:3011:8: note: in expansion of macro 'SIMDE_CAST_ALIGN'
3011 | r = *SIMDE_CAST_ALIGN(32, simde__m256 const*, a);
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'void simde_mm256_store_ps(simde_float32*, simde__m256)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'simde_float32*' {aka 'float*'} to 'simde__m256*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:4214:4: note: in expansion of macro 'SIMDE_CAST_ALIGN'
4214 | *SIMDE_CAST_ALIGN(32, simde__m256*, mem_addr) = a;
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'void simde_mm256_store_pd(simde_float64*, simde__m256d)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'simde_float64*' {aka 'double*'} to 'simde__m256d*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:4229:4: note: in expansion of macro 'SIMDE_CAST_ALIGN'
4229 | *SIMDE_CAST_ALIGN(32, simde__m256d*, mem_addr) = a;
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'void simde_mm256_stream_ps(simde_float32*, simde__m256)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'simde_float32*' {aka 'float*'} to 'simde__m256*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:4328:4: note: in expansion of macro 'SIMDE_CAST_ALIGN'
4328 | *SIMDE_CAST_ALIGN(32, simde__m256*, mem_addr) = a;
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'void simde_mm256_stream_pd(simde_float64*, simde__m256d)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'simde_float64*' {aka 'double*'} to 'simde__m256d*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:4343:4: note: in expansion of macro 'SIMDE_CAST_ALIGN'
4343 | *SIMDE_CAST_ALIGN(32, simde__m256d*, mem_addr) = a;
| ^~~~~~~~~~~~~~~~
In file included from mcf_simd.hh:7,
from GappedXdropAligner.hh:50,
from GappedXdropAlignerPssm.cc:3:
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepi8_epi16(simde__m128i)':
../debian/include/simde/x86/avx2.h:339:41: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
339 | simde_mm256_cvtepi8_epi16 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepi8_epi32(simde__m128i)':
../debian/include/simde/x86/avx2.h:359:41: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
359 | simde_mm256_cvtepi8_epi32 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepi16_epi32(simde__m128i)':
../debian/include/simde/x86/avx2.h:397:42: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
397 | simde_mm256_cvtepi16_epi32 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepi16_epi64(simde__m128i)':
../debian/include/simde/x86/avx2.h:417:42: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
417 | simde_mm256_cvtepi16_epi64 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepi32_epi64(simde__m128i)':
../debian/include/simde/x86/avx2.h:437:42: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
437 | simde_mm256_cvtepi32_epi64 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepu8_epi16(simde__m128i)':
../debian/include/simde/x86/avx2.h:457:41: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
457 | simde_mm256_cvtepu8_epi16 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepu8_epi32(simde__m128i)':
../debian/include/simde/x86/avx2.h:477:41: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
477 | simde_mm256_cvtepu8_epi32 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepu16_epi32(simde__m128i)':
../debian/include/simde/x86/avx2.h:515:42: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
515 | simde_mm256_cvtepu16_epi32 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepu16_epi64(simde__m128i)':
../debian/include/simde/x86/avx2.h:535:42: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
535 | simde_mm256_cvtepu16_epi64 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepu32_epi64(simde__m128i)':
../debian/include/simde/x86/avx2.h:555:42: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
555 | simde_mm256_cvtepu32_epi64 (simde__m128i a){
| ~~~~~~~~~~~~~^
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o GappedXdropAligner2qual.o GappedXdropAligner2qual.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o GappedXdropAligner3frame.o GappedXdropAligner3frame.cc
In file included from ../debian/include/simde/x86/sse2.h:34,
from ../debian/include/simde/x86/sse3.h:28,
from ../debian/include/simde/x86/ssse3.h:28,
from ../debian/include/simde/x86/sse4.1.h:28,
from ../debian/include/simde/x86/avx2.h:26,
from mcf_simd.hh:7,
from GappedXdropAligner.hh:50,
from GappedXdropAligner2qual.cc:3:
../debian/include/simde/x86/sse.h: In function 'simde__m128 simde_mm_cvt_pi2ps(simde__m128, simde__m64)':
../debian/include/simde/x86/sse.h:968:47: warning: parameter 'b' set but not used [-Wunused-but-set-parameter]
968 | simde_mm_cvt_pi2ps (simde__m128 a, simde__m64 b) {
| ~~~~~~~~~~~^
../debian/include/simde/x86/sse.h: In function 'simde__m64 simde_mm_cvt_ps2pi(simde__m128)':
../debian/include/simde/x86/sse.h:991:33: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
991 | simde_mm_cvt_ps2pi (simde__m128 a) {
| ~~~~~~~~~~~~^
../debian/include/simde/x86/sse.h: In function 'simde__m128 simde_mm_cvtpi16_ps(simde__m64)':
../debian/include/simde/x86/sse.h:1046:33: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1046 | simde_mm_cvtpi16_ps (simde__m64 a) {
| ~~~~~~~~~~~^
../debian/include/simde/x86/sse.h: In function 'simde__m128 simde_mm_cvtpi32_ps(simde__m128, simde__m64)':
../debian/include/simde/x86/sse.h:1068:48: warning: parameter 'b' set but not used [-Wunused-but-set-parameter]
1068 | simde_mm_cvtpi32_ps (simde__m128 a, simde__m64 b) {
| ~~~~~~~~~~~^
../debian/include/simde/x86/sse.h: In function 'simde__m128 simde_mm_cvtpi32x2_ps(simde__m64, simde__m64)':
../debian/include/simde/x86/sse.h:1091:35: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1091 | simde_mm_cvtpi32x2_ps (simde__m64 a, simde__m64 b) {
| ~~~~~~~~~~~^
../debian/include/simde/x86/sse.h:1091:49: warning: parameter 'b' set but not used [-Wunused-but-set-parameter]
1091 | simde_mm_cvtpi32x2_ps (simde__m64 a, simde__m64 b) {
| ~~~~~~~~~~~^
../debian/include/simde/x86/sse.h: In function 'simde__m64 simde_mm_cvtps_pi16(simde__m128)':
../debian/include/simde/x86/sse.h:1134:34: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1134 | simde_mm_cvtps_pi16 (simde__m128 a) {
| ~~~~~~~~~~~~^
../debian/include/simde/x86/sse.h: In function 'simde__m64 simde_mm_cvtps_pi32(simde__m128)':
../debian/include/simde/x86/sse.h:1156:34: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1156 | simde_mm_cvtps_pi32 (simde__m128 a) {
| ~~~~~~~~~~~~^
../debian/include/simde/x86/sse.h: In function 'simde__m128 simde_mm_cvtpu16_ps(simde__m64)':
../debian/include/simde/x86/sse.h:1198:33: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1198 | simde_mm_cvtpu16_ps (simde__m64 a) {
| ~~~~~~~~~~~^
../debian/include/simde/x86/sse.h: In function 'simde__m64 simde_mm_cvtt_ps2pi(simde__m128)':
../debian/include/simde/x86/sse.h:1331:34: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1331 | simde_mm_cvtt_ps2pi (simde__m128 a) {
| ~~~~~~~~~~~~^
In file included from ../debian/include/simde/x86/sse3.h:28,
from ../debian/include/simde/x86/ssse3.h:28,
from ../debian/include/simde/x86/sse4.1.h:28,
from ../debian/include/simde/x86/avx2.h:26,
from mcf_simd.hh:7,
from GappedXdropAligner.hh:50,
from GappedXdropAligner2qual.cc:3:
../debian/include/simde/x86/sse2.h: In function 'simde__m128d simde_mm_cvtepi32_pd(simde__m128i)':
../debian/include/simde/x86/sse2.h:1476:36: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1476 | simde_mm_cvtepi32_pd (simde__m128i a) {
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m128 simde_mm_cvtepi32_ps(simde__m128i)':
../debian/include/simde/x86/sse2.h:1498:36: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1498 | simde_mm_cvtepi32_ps (simde__m128i a) {
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m128i simde_mm_cvtpd_epi32(simde__m128d)':
../debian/include/simde/x86/sse2.h:1522:36: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1522 | simde_mm_cvtpd_epi32 (simde__m128d a) {
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m64 simde_mm_cvtpd_pi32(simde__m128d)':
../debian/include/simde/x86/sse2.h:1545:35: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1545 | simde_mm_cvtpd_pi32 (simde__m128d a) {
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m128 simde_mm_cvtpd_ps(simde__m128d)':
../debian/include/simde/x86/sse2.h:1567:33: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1567 | simde_mm_cvtpd_ps (simde__m128d a) {
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m128d simde_mm_cvtpi32_pd(simde__m64)':
../debian/include/simde/x86/sse2.h:1591:33: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1591 | simde_mm_cvtpi32_pd (simde__m64 a) {
| ~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m128i simde_mm_cvtps_epi32(simde__m128)':
../debian/include/simde/x86/sse2.h:1613:35: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1613 | simde_mm_cvtps_epi32 (simde__m128 a) {
| ~~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m128d simde_mm_cvtps_pd(simde__m128)':
../debian/include/simde/x86/sse2.h:1651:32: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1651 | simde_mm_cvtps_pd (simde__m128 a) {
| ~~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m64 simde_mm_cvttpd_pi32(simde__m128d)':
../debian/include/simde/x86/sse2.h:1899:36: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1899 | simde_mm_cvttpd_pi32 (simde__m128d a) {
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m128i simde_mm_cvttps_epi32(simde__m128)':
../debian/include/simde/x86/sse2.h:1920:36: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1920 | simde_mm_cvttps_epi32 (simde__m128 a) {
| ~~~~~~~~~~~~^
In file included from ../debian/include/simde/x86/../simde-common.h:27,
from ../debian/include/simde/x86/mmx.h:28,
from ../debian/include/simde/x86/sse.h:32,
from ../debian/include/simde/x86/sse2.h:34,
from ../debian/include/simde/x86/sse3.h:28,
from ../debian/include/simde/x86/ssse3.h:28,
from ../debian/include/simde/x86/sse4.1.h:28,
from ../debian/include/simde/x86/avx2.h:26,
from mcf_simd.hh:7,
from GappedXdropAligner.hh:50,
from GappedXdropAligner2qual.cc:3:
../debian/include/simde/x86/avx.h: In function 'simde__m256d simde_mm256_load_pd(const double*)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'const double*' to 'const simde__m256d*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:2992:8: note: in expansion of macro 'SIMDE_CAST_ALIGN'
2992 | r = *SIMDE_CAST_ALIGN(32, simde__m256d const*, a);
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'simde__m256 simde_mm256_load_ps(const float*)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'const float*' to 'const simde__m256*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:3011:8: note: in expansion of macro 'SIMDE_CAST_ALIGN'
3011 | r = *SIMDE_CAST_ALIGN(32, simde__m256 const*, a);
| ^~~~~~~~~~~~~~~~
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o mcf_gap_costs.o mcf_gap_costs.cc
../debian/include/simde/x86/avx.h: In function 'void simde_mm256_store_ps(simde_float32*, simde__m256)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'simde_float32*' {aka 'float*'} to 'simde__m256*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:4214:4: note: in expansion of macro 'SIMDE_CAST_ALIGN'
4214 | *SIMDE_CAST_ALIGN(32, simde__m256*, mem_addr) = a;
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'void simde_mm256_store_pd(simde_float64*, simde__m256d)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'simde_float64*' {aka 'double*'} to 'simde__m256d*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:4229:4: note: in expansion of macro 'SIMDE_CAST_ALIGN'
4229 | *SIMDE_CAST_ALIGN(32, simde__m256d*, mem_addr) = a;
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'void simde_mm256_stream_ps(simde_float32*, simde__m256)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'simde_float32*' {aka 'float*'} to 'simde__m256*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:4328:4: note: in expansion of macro 'SIMDE_CAST_ALIGN'
4328 | *SIMDE_CAST_ALIGN(32, simde__m256*, mem_addr) = a;
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'void simde_mm256_stream_pd(simde_float64*, simde__m256d)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'simde_float64*' {aka 'double*'} to 'simde__m256d*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:4343:4: note: in expansion of macro 'SIMDE_CAST_ALIGN'
4343 | *SIMDE_CAST_ALIGN(32, simde__m256d*, mem_addr) = a;
| ^~~~~~~~~~~~~~~~
In file included from mcf_simd.hh:7,
from GappedXdropAligner.hh:50,
from GappedXdropAligner2qual.cc:3:
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepi8_epi16(simde__m128i)':
../debian/include/simde/x86/avx2.h:339:41: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
339 | simde_mm256_cvtepi8_epi16 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepi8_epi32(simde__m128i)':
../debian/include/simde/x86/avx2.h:359:41: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
359 | simde_mm256_cvtepi8_epi32 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepi16_epi32(simde__m128i)':
../debian/include/simde/x86/avx2.h:397:42: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
397 | simde_mm256_cvtepi16_epi32 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepi16_epi64(simde__m128i)':
../debian/include/simde/x86/avx2.h:417:42: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
417 | simde_mm256_cvtepi16_epi64 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepi32_epi64(simde__m128i)':
../debian/include/simde/x86/avx2.h:437:42: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
437 | simde_mm256_cvtepi32_epi64 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepu8_epi16(simde__m128i)':
../debian/include/simde/x86/avx2.h:457:41: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
457 | simde_mm256_cvtepu8_epi16 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepu8_epi32(simde__m128i)':
../debian/include/simde/x86/avx2.h:477:41: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
477 | simde_mm256_cvtepu8_epi32 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepu16_epi32(simde__m128i)':
../debian/include/simde/x86/avx2.h:515:42: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
515 | simde_mm256_cvtepu16_epi32 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepu16_epi64(simde__m128i)':
../debian/include/simde/x86/avx2.h:535:42: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
535 | simde_mm256_cvtepu16_epi64 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepu32_epi64(simde__m128i)':
../debian/include/simde/x86/avx2.h:555:42: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
555 | simde_mm256_cvtepu32_epi64 (simde__m128i a){
| ~~~~~~~~~~~~~^
In file included from ../debian/include/simde/x86/sse2.h:34,
from ../debian/include/simde/x86/sse3.h:28,
from ../debian/include/simde/x86/ssse3.h:28,
from ../debian/include/simde/x86/sse4.1.h:28,
from ../debian/include/simde/x86/avx2.h:26,
from mcf_simd.hh:7,
from GappedXdropAligner.hh:50,
from GappedXdropAligner3frame.cc:53:
../debian/include/simde/x86/sse.h: In function 'simde__m128 simde_mm_cvt_pi2ps(simde__m128, simde__m64)':
../debian/include/simde/x86/sse.h:968:47: warning: parameter 'b' set but not used [-Wunused-but-set-parameter]
968 | simde_mm_cvt_pi2ps (simde__m128 a, simde__m64 b) {
| ~~~~~~~~~~~^
../debian/include/simde/x86/sse.h: In function 'simde__m64 simde_mm_cvt_ps2pi(simde__m128)':
../debian/include/simde/x86/sse.h:991:33: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
991 | simde_mm_cvt_ps2pi (simde__m128 a) {
| ~~~~~~~~~~~~^
../debian/include/simde/x86/sse.h: In function 'simde__m128 simde_mm_cvtpi16_ps(simde__m64)':
../debian/include/simde/x86/sse.h:1046:33: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1046 | simde_mm_cvtpi16_ps (simde__m64 a) {
| ~~~~~~~~~~~^
../debian/include/simde/x86/sse.h: In function 'simde__m128 simde_mm_cvtpi32_ps(simde__m128, simde__m64)':
../debian/include/simde/x86/sse.h:1068:48: warning: parameter 'b' set but not used [-Wunused-but-set-parameter]
1068 | simde_mm_cvtpi32_ps (simde__m128 a, simde__m64 b) {
| ~~~~~~~~~~~^
../debian/include/simde/x86/sse.h: In function 'simde__m128 simde_mm_cvtpi32x2_ps(simde__m64, simde__m64)':
../debian/include/simde/x86/sse.h:1091:35: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1091 | simde_mm_cvtpi32x2_ps (simde__m64 a, simde__m64 b) {
| ~~~~~~~~~~~^
../debian/include/simde/x86/sse.h:1091:49: warning: parameter 'b' set but not used [-Wunused-but-set-parameter]
1091 | simde_mm_cvtpi32x2_ps (simde__m64 a, simde__m64 b) {
| ~~~~~~~~~~~^
../debian/include/simde/x86/sse.h: In function 'simde__m64 simde_mm_cvtps_pi16(simde__m128)':
../debian/include/simde/x86/sse.h:1134:34: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1134 | simde_mm_cvtps_pi16 (simde__m128 a) {
| ~~~~~~~~~~~~^
../debian/include/simde/x86/sse.h: In function 'simde__m64 simde_mm_cvtps_pi32(simde__m128)':
../debian/include/simde/x86/sse.h:1156:34: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1156 | simde_mm_cvtps_pi32 (simde__m128 a) {
| ~~~~~~~~~~~~^
../debian/include/simde/x86/sse.h: In function 'simde__m128 simde_mm_cvtpu16_ps(simde__m64)':
../debian/include/simde/x86/sse.h:1198:33: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1198 | simde_mm_cvtpu16_ps (simde__m64 a) {
| ~~~~~~~~~~~^
../debian/include/simde/x86/sse.h: In function 'simde__m64 simde_mm_cvtt_ps2pi(simde__m128)':
../debian/include/simde/x86/sse.h:1331:34: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1331 | simde_mm_cvtt_ps2pi (simde__m128 a) {
| ~~~~~~~~~~~~^
In file included from ../debian/include/simde/x86/sse3.h:28,
from ../debian/include/simde/x86/ssse3.h:28,
from ../debian/include/simde/x86/sse4.1.h:28,
from ../debian/include/simde/x86/avx2.h:26,
from mcf_simd.hh:7,
from GappedXdropAligner.hh:50,
from GappedXdropAligner3frame.cc:53:
../debian/include/simde/x86/sse2.h: In function 'simde__m128d simde_mm_cvtepi32_pd(simde__m128i)':
../debian/include/simde/x86/sse2.h:1476:36: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1476 | simde_mm_cvtepi32_pd (simde__m128i a) {
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m128 simde_mm_cvtepi32_ps(simde__m128i)':
../debian/include/simde/x86/sse2.h:1498:36: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1498 | simde_mm_cvtepi32_ps (simde__m128i a) {
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m128i simde_mm_cvtpd_epi32(simde__m128d)':
../debian/include/simde/x86/sse2.h:1522:36: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1522 | simde_mm_cvtpd_epi32 (simde__m128d a) {
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m64 simde_mm_cvtpd_pi32(simde__m128d)':
../debian/include/simde/x86/sse2.h:1545:35: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1545 | simde_mm_cvtpd_pi32 (simde__m128d a) {
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m128 simde_mm_cvtpd_ps(simde__m128d)':
../debian/include/simde/x86/sse2.h:1567:33: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1567 | simde_mm_cvtpd_ps (simde__m128d a) {
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m128d simde_mm_cvtpi32_pd(simde__m64)':
../debian/include/simde/x86/sse2.h:1591:33: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1591 | simde_mm_cvtpi32_pd (simde__m64 a) {
| ~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m128i simde_mm_cvtps_epi32(simde__m128)':
../debian/include/simde/x86/sse2.h:1613:35: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1613 | simde_mm_cvtps_epi32 (simde__m128 a) {
| ~~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m128d simde_mm_cvtps_pd(simde__m128)':
../debian/include/simde/x86/sse2.h:1651:32: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1651 | simde_mm_cvtps_pd (simde__m128 a) {
| ~~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m64 simde_mm_cvttpd_pi32(simde__m128d)':
../debian/include/simde/x86/sse2.h:1899:36: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1899 | simde_mm_cvttpd_pi32 (simde__m128d a) {
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m128i simde_mm_cvttps_epi32(simde__m128)':
../debian/include/simde/x86/sse2.h:1920:36: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1920 | simde_mm_cvttps_epi32 (simde__m128 a) {
| ~~~~~~~~~~~~^
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o GeneticCode.o GeneticCode.cc
In file included from ../debian/include/simde/x86/../simde-common.h:27,
from ../debian/include/simde/x86/mmx.h:28,
from ../debian/include/simde/x86/sse.h:32,
from ../debian/include/simde/x86/sse2.h:34,
from ../debian/include/simde/x86/sse3.h:28,
from ../debian/include/simde/x86/ssse3.h:28,
from ../debian/include/simde/x86/sse4.1.h:28,
from ../debian/include/simde/x86/avx2.h:26,
from mcf_simd.hh:7,
from GappedXdropAligner.hh:50,
from GappedXdropAligner3frame.cc:53:
../debian/include/simde/x86/avx.h: In function 'simde__m256d simde_mm256_load_pd(const double*)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'const double*' to 'const simde__m256d*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:2992:8: note: in expansion of macro 'SIMDE_CAST_ALIGN'
2992 | r = *SIMDE_CAST_ALIGN(32, simde__m256d const*, a);
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'simde__m256 simde_mm256_load_ps(const float*)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'const float*' to 'const simde__m256*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:3011:8: note: in expansion of macro 'SIMDE_CAST_ALIGN'
3011 | r = *SIMDE_CAST_ALIGN(32, simde__m256 const*, a);
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'void simde_mm256_store_ps(simde_float32*, simde__m256)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'simde_float32*' {aka 'float*'} to 'simde__m256*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:4214:4: note: in expansion of macro 'SIMDE_CAST_ALIGN'
4214 | *SIMDE_CAST_ALIGN(32, simde__m256*, mem_addr) = a;
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'void simde_mm256_store_pd(simde_float64*, simde__m256d)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'simde_float64*' {aka 'double*'} to 'simde__m256d*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:4229:4: note: in expansion of macro 'SIMDE_CAST_ALIGN'
4229 | *SIMDE_CAST_ALIGN(32, simde__m256d*, mem_addr) = a;
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'void simde_mm256_stream_ps(simde_float32*, simde__m256)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'simde_float32*' {aka 'float*'} to 'simde__m256*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:4328:4: note: in expansion of macro 'SIMDE_CAST_ALIGN'
4328 | *SIMDE_CAST_ALIGN(32, simde__m256*, mem_addr) = a;
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'void simde_mm256_stream_pd(simde_float64*, simde__m256d)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'simde_float64*' {aka 'double*'} to 'simde__m256d*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:4343:4: note: in expansion of macro 'SIMDE_CAST_ALIGN'
4343 | *SIMDE_CAST_ALIGN(32, simde__m256d*, mem_addr) = a;
| ^~~~~~~~~~~~~~~~
In file included from mcf_simd.hh:7,
from GappedXdropAligner.hh:50,
from GappedXdropAligner3frame.cc:53:
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepi8_epi16(simde__m128i)':
../debian/include/simde/x86/avx2.h:339:41: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
339 | simde_mm256_cvtepi8_epi16 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepi8_epi32(simde__m128i)':
../debian/include/simde/x86/avx2.h:359:41: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
359 | simde_mm256_cvtepi8_epi32 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepi16_epi32(simde__m128i)':
../debian/include/simde/x86/avx2.h:397:42: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
397 | simde_mm256_cvtepi16_epi32 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepi16_epi64(simde__m128i)':
../debian/include/simde/x86/avx2.h:417:42: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
417 | simde_mm256_cvtepi16_epi64 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepi32_epi64(simde__m128i)':
../debian/include/simde/x86/avx2.h:437:42: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
437 | simde_mm256_cvtepi32_epi64 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepu8_epi16(simde__m128i)':
../debian/include/simde/x86/avx2.h:457:41: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
457 | simde_mm256_cvtepu8_epi16 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepu8_epi32(simde__m128i)':
../debian/include/simde/x86/avx2.h:477:41: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
477 | simde_mm256_cvtepu8_epi32 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepu16_epi32(simde__m128i)':
../debian/include/simde/x86/avx2.h:515:42: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
515 | simde_mm256_cvtepu16_epi32 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepu16_epi64(simde__m128i)':
../debian/include/simde/x86/avx2.h:535:42: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
535 | simde_mm256_cvtepu16_epi64 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepu32_epi64(simde__m128i)':
../debian/include/simde/x86/avx2.h:555:42: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
555 | simde_mm256_cvtepu32_epi64 (simde__m128i a){
| ~~~~~~~~~~~~~^
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o GreedyXdropAligner.o GreedyXdropAligner.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o LastEvaluer.o LastEvaluer.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o OneQualityScoreMatrix.o OneQualityScoreMatrix.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o QualityPssmMaker.o QualityPssmMaker.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o TwoQualityScoreMatrix.o TwoQualityScoreMatrix.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o gaplessXdrop.o gaplessXdrop.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o gaplessPssmXdrop.o gaplessPssmXdrop.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o gaplessTwoQualityXdrop.o gaplessTwoQualityXdrop.cc
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -c -o alp/sls_alignment_evaluer.o alp/sls_alignment_evaluer.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -c -o alp/sls_pvalues.o alp/sls_pvalues.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -c -o alp/sls_alp_sim.o alp/sls_alp_sim.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -c -o alp/sls_alp_regression.o alp/sls_alp_regression.cpp
In file included from /usr/include/c++/9/algorithm:62,
from alp/sls_alp_regression.hpp:46,
from alp/sls_alp_regression.cpp:36:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<double, long int>*, std::vector<std::pair<double, long int> > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, long int>*, std::vector<std::pair<double, long int> > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, long int>*, std::vector<std::pair<double, long int> > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator<std::pair<double, long int>*, std::vector<std::pair<double, long int> > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, long int>*, std::vector<std::pair<double, long int> > >' changed in GCC 7.1
78 | __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b,
| ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, long int>*, std::vector<std::pair<double, long int> > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, long int>*, std::vector<std::pair<double, long int> > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, long int>*, std::vector<std::pair<double, long int> > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, long int>*, std::vector<std::pair<double, long int> > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, long int>*, std::vector<std::pair<double, long int> > >' changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from alp/sls_alp_regression.hpp:46,
from alp/sls_alp_regression.cpp:36:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from alp/sls_alp_regression.hpp:46,
from alp/sls_alp_regression.cpp:36:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In static member function 'static void Sls::alp_reg::find_tetta_general(double (*)(double, void*), void*, double, double, long int, double, std::vector<double>&)':
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In static member function 'static double Sls::alp_reg::median(long int, double*)':
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from alp/sls_alp_regression.hpp:46,
from alp/sls_alp_regression.cpp:36:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<double, long int>*, std::vector<std::pair<double, long int> > >; _Distance = int; _Tp = std::pair<double, long int>; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, long int>*, std::vector<std::pair<double, long int> > >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from alp/sls_alp_regression.hpp:46,
from alp/sls_alp_regression.cpp:36:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<double, long int>*, std::vector<std::pair<double, long int> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, long int>*, std::vector<std::pair<double, long int> > >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, long int>*, std::vector<std::pair<double, long int> > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1920:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, long int>*, std::vector<std::pair<double, long int> > >' changed in GCC 7.1
1920 | std::__move_median_to_first(__first, __first + 1, __mid, __last - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1921 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1920:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, long int>*, std::vector<std::pair<double, long int> > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, long int>*, std::vector<std::pair<double, long int> > >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In static member function 'static double Sls::alp_reg::robust_sum(double*, long int, long int, bool*&)':
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, long int>*, std::vector<std::pair<double, long int> > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, long int>*, std::vector<std::pair<double, long int> > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, long int>*, std::vector<std::pair<double, long int> > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from alp/sls_pvalues.hpp:41,
from alp/sls_alignment_evaluer.hpp:39,
from alp/sls_alignment_evaluer.cpp:37:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void Sls::AlignmentEvaluer::initParameters(const Sls::AlignmentEvaluerParametersWithErrors&)':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -c -o alp/sls_alp_data.o alp/sls_alp_data.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -c -o alp/sls_alp.o alp/sls_alp.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -c -o alp/sls_basic.o alp/sls_basic.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -c -o alp/njn_localmaxstatmatrix.o alp/njn_localmaxstatmatrix.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -c -o alp/njn_localmaxstat.o alp/njn_localmaxstat.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -c -o alp/njn_localmaxstatutil.o alp/njn_localmaxstatutil.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -c -o alp/njn_dynprogprob.o alp/njn_dynprogprob.cpp
In file included from /usr/include/c++/9/algorithm:62,
from alp/sls_alp_regression.hpp:46,
from alp/sls_alp_data.hpp:62,
from alp/sls_alp_data.cpp:36:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from alp/sls_alp_regression.hpp:46,
from alp/sls_alp_data.hpp:62,
from alp/sls_alp_data.cpp:36:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from alp/sls_alp_regression.hpp:46,
from alp/sls_alp_data.hpp:62,
from alp/sls_alp_data.cpp:36:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In constructor 'Sls::importance_sampling::importance_sampling(Sls::alp_data*, long int, long int, double, long int, long int**, double*, double*)':
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -c -o alp/njn_dynprogprobproto.o alp/njn_dynprogprobproto.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -c -o alp/njn_dynprogproblim.o alp/njn_dynprogproblim.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -c -o alp/njn_ioutil.o alp/njn_ioutil.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -c -o alp/njn_random.o alp/njn_random.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -c -o alp/sls_falp_alignment_evaluer.o alp/sls_falp_alignment_evaluer.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -c -o alp/sls_fsa1_pvalues.o alp/sls_fsa1_pvalues.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -c -o alp/sls_fsa1_utils.o alp/sls_fsa1_utils.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -c -o alp/sls_fsa1.o alp/sls_fsa1.cpp
In file included from /usr/include/c++/9/vector:72,
from alp/sls_fsa1_pvalues.hpp:41,
from alp/sls_falp_alignment_evaluer.hpp:40,
from alp/sls_falp_alignment_evaluer.cpp:37:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void Sls::FrameshiftAlignmentEvaluer::initParameters(const Sls::AlignmentEvaluerParametersWithErrors&)':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -c -o alp/sls_fsa1_parameters.o alp/sls_fsa1_parameters.cpp
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o Alignment.o Alignment.cc
In file included from ../debian/include/simde/x86/sse2.h:34,
from ../debian/include/simde/x86/sse3.h:28,
from ../debian/include/simde/x86/ssse3.h:28,
from ../debian/include/simde/x86/sse4.1.h:28,
from ../debian/include/simde/x86/avx2.h:26,
from mcf_simd.hh:7,
from GappedXdropAligner.hh:50,
from Centroid.hh:6,
from Alignment.cc:5:
../debian/include/simde/x86/sse.h: In function 'simde__m128 simde_mm_cvt_pi2ps(simde__m128, simde__m64)':
../debian/include/simde/x86/sse.h:968:47: warning: parameter 'b' set but not used [-Wunused-but-set-parameter]
968 | simde_mm_cvt_pi2ps (simde__m128 a, simde__m64 b) {
| ~~~~~~~~~~~^
../debian/include/simde/x86/sse.h: In function 'simde__m64 simde_mm_cvt_ps2pi(simde__m128)':
../debian/include/simde/x86/sse.h:991:33: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
991 | simde_mm_cvt_ps2pi (simde__m128 a) {
| ~~~~~~~~~~~~^
../debian/include/simde/x86/sse.h: In function 'simde__m128 simde_mm_cvtpi16_ps(simde__m64)':
../debian/include/simde/x86/sse.h:1046:33: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1046 | simde_mm_cvtpi16_ps (simde__m64 a) {
| ~~~~~~~~~~~^
../debian/include/simde/x86/sse.h: In function 'simde__m128 simde_mm_cvtpi32_ps(simde__m128, simde__m64)':
../debian/include/simde/x86/sse.h:1068:48: warning: parameter 'b' set but not used [-Wunused-but-set-parameter]
1068 | simde_mm_cvtpi32_ps (simde__m128 a, simde__m64 b) {
| ~~~~~~~~~~~^
../debian/include/simde/x86/sse.h: In function 'simde__m128 simde_mm_cvtpi32x2_ps(simde__m64, simde__m64)':
../debian/include/simde/x86/sse.h:1091:35: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1091 | simde_mm_cvtpi32x2_ps (simde__m64 a, simde__m64 b) {
| ~~~~~~~~~~~^
../debian/include/simde/x86/sse.h:1091:49: warning: parameter 'b' set but not used [-Wunused-but-set-parameter]
1091 | simde_mm_cvtpi32x2_ps (simde__m64 a, simde__m64 b) {
| ~~~~~~~~~~~^
../debian/include/simde/x86/sse.h: In function 'simde__m64 simde_mm_cvtps_pi16(simde__m128)':
../debian/include/simde/x86/sse.h:1134:34: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1134 | simde_mm_cvtps_pi16 (simde__m128 a) {
| ~~~~~~~~~~~~^
../debian/include/simde/x86/sse.h: In function 'simde__m64 simde_mm_cvtps_pi32(simde__m128)':
../debian/include/simde/x86/sse.h:1156:34: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1156 | simde_mm_cvtps_pi32 (simde__m128 a) {
| ~~~~~~~~~~~~^
../debian/include/simde/x86/sse.h: In function 'simde__m128 simde_mm_cvtpu16_ps(simde__m64)':
../debian/include/simde/x86/sse.h:1198:33: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1198 | simde_mm_cvtpu16_ps (simde__m64 a) {
| ~~~~~~~~~~~^
../debian/include/simde/x86/sse.h: In function 'simde__m64 simde_mm_cvtt_ps2pi(simde__m128)':
../debian/include/simde/x86/sse.h:1331:34: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1331 | simde_mm_cvtt_ps2pi (simde__m128 a) {
| ~~~~~~~~~~~~^
In file included from ../debian/include/simde/x86/sse3.h:28,
from ../debian/include/simde/x86/ssse3.h:28,
from ../debian/include/simde/x86/sse4.1.h:28,
from ../debian/include/simde/x86/avx2.h:26,
from mcf_simd.hh:7,
from GappedXdropAligner.hh:50,
from Centroid.hh:6,
from Alignment.cc:5:
../debian/include/simde/x86/sse2.h: In function 'simde__m128d simde_mm_cvtepi32_pd(simde__m128i)':
../debian/include/simde/x86/sse2.h:1476:36: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1476 | simde_mm_cvtepi32_pd (simde__m128i a) {
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m128 simde_mm_cvtepi32_ps(simde__m128i)':
../debian/include/simde/x86/sse2.h:1498:36: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1498 | simde_mm_cvtepi32_ps (simde__m128i a) {
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m128i simde_mm_cvtpd_epi32(simde__m128d)':
../debian/include/simde/x86/sse2.h:1522:36: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1522 | simde_mm_cvtpd_epi32 (simde__m128d a) {
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m64 simde_mm_cvtpd_pi32(simde__m128d)':
../debian/include/simde/x86/sse2.h:1545:35: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1545 | simde_mm_cvtpd_pi32 (simde__m128d a) {
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m128 simde_mm_cvtpd_ps(simde__m128d)':
../debian/include/simde/x86/sse2.h:1567:33: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1567 | simde_mm_cvtpd_ps (simde__m128d a) {
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m128d simde_mm_cvtpi32_pd(simde__m64)':
../debian/include/simde/x86/sse2.h:1591:33: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1591 | simde_mm_cvtpi32_pd (simde__m64 a) {
| ~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m128i simde_mm_cvtps_epi32(simde__m128)':
../debian/include/simde/x86/sse2.h:1613:35: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1613 | simde_mm_cvtps_epi32 (simde__m128 a) {
| ~~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m128d simde_mm_cvtps_pd(simde__m128)':
../debian/include/simde/x86/sse2.h:1651:32: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1651 | simde_mm_cvtps_pd (simde__m128 a) {
| ~~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m64 simde_mm_cvttpd_pi32(simde__m128d)':
../debian/include/simde/x86/sse2.h:1899:36: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1899 | simde_mm_cvttpd_pi32 (simde__m128d a) {
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m128i simde_mm_cvttps_epi32(simde__m128)':
../debian/include/simde/x86/sse2.h:1920:36: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1920 | simde_mm_cvttps_epi32 (simde__m128 a) {
| ~~~~~~~~~~~~^
In file included from ../debian/include/simde/x86/../simde-common.h:27,
from ../debian/include/simde/x86/mmx.h:28,
from ../debian/include/simde/x86/sse.h:32,
from ../debian/include/simde/x86/sse2.h:34,
from ../debian/include/simde/x86/sse3.h:28,
from ../debian/include/simde/x86/ssse3.h:28,
from ../debian/include/simde/x86/sse4.1.h:28,
from ../debian/include/simde/x86/avx2.h:26,
from mcf_simd.hh:7,
from GappedXdropAligner.hh:50,
from Centroid.hh:6,
from Alignment.cc:5:
../debian/include/simde/x86/avx.h: In function 'simde__m256d simde_mm256_load_pd(const double*)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'const double*' to 'const simde__m256d*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:2992:8: note: in expansion of macro 'SIMDE_CAST_ALIGN'
2992 | r = *SIMDE_CAST_ALIGN(32, simde__m256d const*, a);
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'simde__m256 simde_mm256_load_ps(const float*)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'const float*' to 'const simde__m256*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:3011:8: note: in expansion of macro 'SIMDE_CAST_ALIGN'
3011 | r = *SIMDE_CAST_ALIGN(32, simde__m256 const*, a);
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'void simde_mm256_store_ps(simde_float32*, simde__m256)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'simde_float32*' {aka 'float*'} to 'simde__m256*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:4214:4: note: in expansion of macro 'SIMDE_CAST_ALIGN'
4214 | *SIMDE_CAST_ALIGN(32, simde__m256*, mem_addr) = a;
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'void simde_mm256_store_pd(simde_float64*, simde__m256d)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'simde_float64*' {aka 'double*'} to 'simde__m256d*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:4229:4: note: in expansion of macro 'SIMDE_CAST_ALIGN'
4229 | *SIMDE_CAST_ALIGN(32, simde__m256d*, mem_addr) = a;
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'void simde_mm256_stream_ps(simde_float32*, simde__m256)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'simde_float32*' {aka 'float*'} to 'simde__m256*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:4328:4: note: in expansion of macro 'SIMDE_CAST_ALIGN'
4328 | *SIMDE_CAST_ALIGN(32, simde__m256*, mem_addr) = a;
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'void simde_mm256_stream_pd(simde_float64*, simde__m256d)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'simde_float64*' {aka 'double*'} to 'simde__m256d*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:4343:4: note: in expansion of macro 'SIMDE_CAST_ALIGN'
4343 | *SIMDE_CAST_ALIGN(32, simde__m256d*, mem_addr) = a;
| ^~~~~~~~~~~~~~~~
In file included from mcf_simd.hh:7,
from GappedXdropAligner.hh:50,
from Centroid.hh:6,
from Alignment.cc:5:
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepi8_epi16(simde__m128i)':
../debian/include/simde/x86/avx2.h:339:41: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
339 | simde_mm256_cvtepi8_epi16 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepi8_epi32(simde__m128i)':
../debian/include/simde/x86/avx2.h:359:41: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
359 | simde_mm256_cvtepi8_epi32 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepi16_epi32(simde__m128i)':
../debian/include/simde/x86/avx2.h:397:42: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
397 | simde_mm256_cvtepi16_epi32 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepi16_epi64(simde__m128i)':
../debian/include/simde/x86/avx2.h:417:42: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
417 | simde_mm256_cvtepi16_epi64 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepi32_epi64(simde__m128i)':
../debian/include/simde/x86/avx2.h:437:42: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
437 | simde_mm256_cvtepi32_epi64 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepu8_epi16(simde__m128i)':
../debian/include/simde/x86/avx2.h:457:41: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
457 | simde_mm256_cvtepu8_epi16 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepu8_epi32(simde__m128i)':
../debian/include/simde/x86/avx2.h:477:41: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
477 | simde_mm256_cvtepu8_epi32 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepu16_epi32(simde__m128i)':
../debian/include/simde/x86/avx2.h:515:42: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
515 | simde_mm256_cvtepu16_epi32 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepu16_epi64(simde__m128i)':
../debian/include/simde/x86/avx2.h:535:42: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
535 | simde_mm256_cvtepu16_epi64 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepu32_epi64(simde__m128i)':
../debian/include/simde/x86/avx2.h:555:42: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
555 | simde_mm256_cvtepu32_epi64 (simde__m128i a){
| ~~~~~~~~~~~~~^
In file included from /usr/include/c++/9/vector:72,
from alp/sls_fsa1_utils.hpp:40,
from alp/sls_fsa1_utils.cpp:36:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
509 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
In file included from /usr/include/c++/9/vector:67,
from alp/sls_fsa1_utils.hpp:40,
from alp/sls_fsa1_utils.cpp:36:
/usr/include/c++/9/bits/stl_vector.h: In static member function 'static void Sls::FSA_utils::multiply_matrix_and_vector(const std::vector<std::vector<double> >&, const std::vector<double>&, std::vector<double>&)':
/usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
957 | _M_fill_insert(end(), __new_size - size(), __x);
| ^~~~~~~~~~~~~~
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o AlignmentPot.o AlignmentPot.cc
/usr/include/c++/9/bits/stl_vector.h: In static member function 'static void Sls::FSA_utils::multiply_matrices(const std::vector<std::vector<double> >&, const std::vector<std::vector<double> >&, std::vector<std::vector<double> >&)':
/usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
957 | _M_fill_insert(end(), __new_size - size(), __x);
| ^~~~~~~~~~~~~~
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o AlignmentWrite.o AlignmentWrite.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o Centroid.o Centroid.cc
In file included from ../debian/include/simde/x86/sse2.h:34,
from ../debian/include/simde/x86/sse3.h:28,
from ../debian/include/simde/x86/ssse3.h:28,
from ../debian/include/simde/x86/sse4.1.h:28,
from ../debian/include/simde/x86/avx2.h:26,
from mcf_simd.hh:7,
from GappedXdropAligner.hh:50,
from Centroid.hh:6,
from Centroid.cc:4:
../debian/include/simde/x86/sse.h: In function 'simde__m128 simde_mm_cvt_pi2ps(simde__m128, simde__m64)':
../debian/include/simde/x86/sse.h:968:47: warning: parameter 'b' set but not used [-Wunused-but-set-parameter]
968 | simde_mm_cvt_pi2ps (simde__m128 a, simde__m64 b) {
| ~~~~~~~~~~~^
../debian/include/simde/x86/sse.h: In function 'simde__m64 simde_mm_cvt_ps2pi(simde__m128)':
../debian/include/simde/x86/sse.h:991:33: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
991 | simde_mm_cvt_ps2pi (simde__m128 a) {
| ~~~~~~~~~~~~^
../debian/include/simde/x86/sse.h: In function 'simde__m128 simde_mm_cvtpi16_ps(simde__m64)':
../debian/include/simde/x86/sse.h:1046:33: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1046 | simde_mm_cvtpi16_ps (simde__m64 a) {
| ~~~~~~~~~~~^
../debian/include/simde/x86/sse.h: In function 'simde__m128 simde_mm_cvtpi32_ps(simde__m128, simde__m64)':
../debian/include/simde/x86/sse.h:1068:48: warning: parameter 'b' set but not used [-Wunused-but-set-parameter]
1068 | simde_mm_cvtpi32_ps (simde__m128 a, simde__m64 b) {
| ~~~~~~~~~~~^
../debian/include/simde/x86/sse.h: In function 'simde__m128 simde_mm_cvtpi32x2_ps(simde__m64, simde__m64)':
../debian/include/simde/x86/sse.h:1091:35: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1091 | simde_mm_cvtpi32x2_ps (simde__m64 a, simde__m64 b) {
| ~~~~~~~~~~~^
../debian/include/simde/x86/sse.h:1091:49: warning: parameter 'b' set but not used [-Wunused-but-set-parameter]
1091 | simde_mm_cvtpi32x2_ps (simde__m64 a, simde__m64 b) {
| ~~~~~~~~~~~^
../debian/include/simde/x86/sse.h: In function 'simde__m64 simde_mm_cvtps_pi16(simde__m128)':
../debian/include/simde/x86/sse.h:1134:34: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1134 | simde_mm_cvtps_pi16 (simde__m128 a) {
| ~~~~~~~~~~~~^
../debian/include/simde/x86/sse.h: In function 'simde__m64 simde_mm_cvtps_pi32(simde__m128)':
../debian/include/simde/x86/sse.h:1156:34: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1156 | simde_mm_cvtps_pi32 (simde__m128 a) {
| ~~~~~~~~~~~~^
../debian/include/simde/x86/sse.h: In function 'simde__m128 simde_mm_cvtpu16_ps(simde__m64)':
../debian/include/simde/x86/sse.h:1198:33: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1198 | simde_mm_cvtpu16_ps (simde__m64 a) {
| ~~~~~~~~~~~^
../debian/include/simde/x86/sse.h: In function 'simde__m64 simde_mm_cvtt_ps2pi(simde__m128)':
../debian/include/simde/x86/sse.h:1331:34: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1331 | simde_mm_cvtt_ps2pi (simde__m128 a) {
| ~~~~~~~~~~~~^
In file included from ../debian/include/simde/x86/sse3.h:28,
from ../debian/include/simde/x86/ssse3.h:28,
from ../debian/include/simde/x86/sse4.1.h:28,
from ../debian/include/simde/x86/avx2.h:26,
from mcf_simd.hh:7,
from GappedXdropAligner.hh:50,
from Centroid.hh:6,
from Centroid.cc:4:
../debian/include/simde/x86/sse2.h: In function 'simde__m128d simde_mm_cvtepi32_pd(simde__m128i)':
../debian/include/simde/x86/sse2.h:1476:36: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1476 | simde_mm_cvtepi32_pd (simde__m128i a) {
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m128 simde_mm_cvtepi32_ps(simde__m128i)':
../debian/include/simde/x86/sse2.h:1498:36: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1498 | simde_mm_cvtepi32_ps (simde__m128i a) {
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m128i simde_mm_cvtpd_epi32(simde__m128d)':
../debian/include/simde/x86/sse2.h:1522:36: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1522 | simde_mm_cvtpd_epi32 (simde__m128d a) {
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m64 simde_mm_cvtpd_pi32(simde__m128d)':
../debian/include/simde/x86/sse2.h:1545:35: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1545 | simde_mm_cvtpd_pi32 (simde__m128d a) {
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m128 simde_mm_cvtpd_ps(simde__m128d)':
../debian/include/simde/x86/sse2.h:1567:33: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1567 | simde_mm_cvtpd_ps (simde__m128d a) {
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m128d simde_mm_cvtpi32_pd(simde__m64)':
../debian/include/simde/x86/sse2.h:1591:33: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1591 | simde_mm_cvtpi32_pd (simde__m64 a) {
| ~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m128i simde_mm_cvtps_epi32(simde__m128)':
../debian/include/simde/x86/sse2.h:1613:35: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1613 | simde_mm_cvtps_epi32 (simde__m128 a) {
| ~~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m128d simde_mm_cvtps_pd(simde__m128)':
../debian/include/simde/x86/sse2.h:1651:32: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1651 | simde_mm_cvtps_pd (simde__m128 a) {
| ~~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m64 simde_mm_cvttpd_pi32(simde__m128d)':
../debian/include/simde/x86/sse2.h:1899:36: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1899 | simde_mm_cvttpd_pi32 (simde__m128d a) {
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m128i simde_mm_cvttps_epi32(simde__m128)':
../debian/include/simde/x86/sse2.h:1920:36: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1920 | simde_mm_cvttps_epi32 (simde__m128 a) {
| ~~~~~~~~~~~~^
In file included from ../debian/include/simde/x86/../simde-common.h:27,
from ../debian/include/simde/x86/mmx.h:28,
from ../debian/include/simde/x86/sse.h:32,
from ../debian/include/simde/x86/sse2.h:34,
from ../debian/include/simde/x86/sse3.h:28,
from ../debian/include/simde/x86/ssse3.h:28,
from ../debian/include/simde/x86/sse4.1.h:28,
from ../debian/include/simde/x86/avx2.h:26,
from mcf_simd.hh:7,
from GappedXdropAligner.hh:50,
from Centroid.hh:6,
from Centroid.cc:4:
../debian/include/simde/x86/avx.h: In function 'simde__m256d simde_mm256_load_pd(const double*)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'const double*' to 'const simde__m256d*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:2992:8: note: in expansion of macro 'SIMDE_CAST_ALIGN'
2992 | r = *SIMDE_CAST_ALIGN(32, simde__m256d const*, a);
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'simde__m256 simde_mm256_load_ps(const float*)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'const float*' to 'const simde__m256*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:3011:8: note: in expansion of macro 'SIMDE_CAST_ALIGN'
3011 | r = *SIMDE_CAST_ALIGN(32, simde__m256 const*, a);
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'void simde_mm256_store_ps(simde_float32*, simde__m256)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'simde_float32*' {aka 'float*'} to 'simde__m256*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:4214:4: note: in expansion of macro 'SIMDE_CAST_ALIGN'
4214 | *SIMDE_CAST_ALIGN(32, simde__m256*, mem_addr) = a;
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'void simde_mm256_store_pd(simde_float64*, simde__m256d)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'simde_float64*' {aka 'double*'} to 'simde__m256d*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:4229:4: note: in expansion of macro 'SIMDE_CAST_ALIGN'
4229 | *SIMDE_CAST_ALIGN(32, simde__m256d*, mem_addr) = a;
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'void simde_mm256_stream_ps(simde_float32*, simde__m256)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'simde_float32*' {aka 'float*'} to 'simde__m256*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:4328:4: note: in expansion of macro 'SIMDE_CAST_ALIGN'
4328 | *SIMDE_CAST_ALIGN(32, simde__m256*, mem_addr) = a;
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'void simde_mm256_stream_pd(simde_float64*, simde__m256d)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'simde_float64*' {aka 'double*'} to 'simde__m256d*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:4343:4: note: in expansion of macro 'SIMDE_CAST_ALIGN'
4343 | *SIMDE_CAST_ALIGN(32, simde__m256d*, mem_addr) = a;
| ^~~~~~~~~~~~~~~~
In file included from mcf_simd.hh:7,
from GappedXdropAligner.hh:50,
from Centroid.hh:6,
from Centroid.cc:4:
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepi8_epi16(simde__m128i)':
../debian/include/simde/x86/avx2.h:339:41: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
339 | simde_mm256_cvtepi8_epi16 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepi8_epi32(simde__m128i)':
../debian/include/simde/x86/avx2.h:359:41: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
359 | simde_mm256_cvtepi8_epi32 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepi16_epi32(simde__m128i)':
../debian/include/simde/x86/avx2.h:397:42: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
397 | simde_mm256_cvtepi16_epi32 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepi16_epi64(simde__m128i)':
../debian/include/simde/x86/avx2.h:417:42: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
417 | simde_mm256_cvtepi16_epi64 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepi32_epi64(simde__m128i)':
../debian/include/simde/x86/avx2.h:437:42: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
437 | simde_mm256_cvtepi32_epi64 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepu8_epi16(simde__m128i)':
../debian/include/simde/x86/avx2.h:457:41: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
457 | simde_mm256_cvtepu8_epi16 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepu8_epi32(simde__m128i)':
../debian/include/simde/x86/avx2.h:477:41: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
477 | simde_mm256_cvtepu8_epi32 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepu16_epi32(simde__m128i)':
../debian/include/simde/x86/avx2.h:515:42: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
515 | simde_mm256_cvtepu16_epi32 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepu16_epi64(simde__m128i)':
../debian/include/simde/x86/avx2.h:535:42: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
535 | simde_mm256_cvtepu16_epi64 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepu32_epi64(simde__m128i)':
../debian/include/simde/x86/avx2.h:555:42: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
555 | simde_mm256_cvtepu32_epi64 (simde__m128i a){
| ~~~~~~~~~~~~~^
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o DiagonalTable.o DiagonalTable.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o SegmentPair.o SegmentPair.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o SegmentPairPot.o SegmentPairPot.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o SubsetSuffixArraySearch.o SubsetSuffixArraySearch.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o lastal.o lastal.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o split/cbrc_unsplit_alignment.o split/cbrc_unsplit_alignment.cc
In file included from /usr/include/c++/9/vector:72,
from alp/sls_alp_regression.hpp:43,
from alp/sls_fsa1.hpp:39,
from alp/sls_fsa1.cpp:36:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from ../debian/include/simde/x86/sse2.h:34,
from ../debian/include/simde/x86/sse3.h:28,
from ../debian/include/simde/x86/ssse3.h:28,
from ../debian/include/simde/x86/sse4.1.h:28,
from ../debian/include/simde/x86/avx2.h:26,
from mcf_simd.hh:7,
from GappedXdropAligner.hh:50,
from Centroid.hh:6,
from lastal.cc:15:
../debian/include/simde/x86/sse.h: In function 'simde__m128 simde_mm_cvt_pi2ps(simde__m128, simde__m64)':
../debian/include/simde/x86/sse.h:968:47: warning: parameter 'b' set but not used [-Wunused-but-set-parameter]
968 | simde_mm_cvt_pi2ps (simde__m128 a, simde__m64 b) {
| ~~~~~~~~~~~^
../debian/include/simde/x86/sse.h: In function 'simde__m64 simde_mm_cvt_ps2pi(simde__m128)':
../debian/include/simde/x86/sse.h:991:33: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
991 | simde_mm_cvt_ps2pi (simde__m128 a) {
| ~~~~~~~~~~~~^
../debian/include/simde/x86/sse.h: In function 'simde__m128 simde_mm_cvtpi16_ps(simde__m64)':
../debian/include/simde/x86/sse.h:1046:33: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1046 | simde_mm_cvtpi16_ps (simde__m64 a) {
| ~~~~~~~~~~~^
../debian/include/simde/x86/sse.h: In function 'simde__m128 simde_mm_cvtpi32_ps(simde__m128, simde__m64)':
../debian/include/simde/x86/sse.h:1068:48: warning: parameter 'b' set but not used [-Wunused-but-set-parameter]
1068 | simde_mm_cvtpi32_ps (simde__m128 a, simde__m64 b) {
| ~~~~~~~~~~~^
../debian/include/simde/x86/sse.h: In function 'simde__m128 simde_mm_cvtpi32x2_ps(simde__m64, simde__m64)':
../debian/include/simde/x86/sse.h:1091:35: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1091 | simde_mm_cvtpi32x2_ps (simde__m64 a, simde__m64 b) {
| ~~~~~~~~~~~^
../debian/include/simde/x86/sse.h:1091:49: warning: parameter 'b' set but not used [-Wunused-but-set-parameter]
1091 | simde_mm_cvtpi32x2_ps (simde__m64 a, simde__m64 b) {
| ~~~~~~~~~~~^
../debian/include/simde/x86/sse.h: In function 'simde__m64 simde_mm_cvtps_pi16(simde__m128)':
../debian/include/simde/x86/sse.h:1134:34: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1134 | simde_mm_cvtps_pi16 (simde__m128 a) {
| ~~~~~~~~~~~~^
../debian/include/simde/x86/sse.h: In function 'simde__m64 simde_mm_cvtps_pi32(simde__m128)':
../debian/include/simde/x86/sse.h:1156:34: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1156 | simde_mm_cvtps_pi32 (simde__m128 a) {
| ~~~~~~~~~~~~^
../debian/include/simde/x86/sse.h: In function 'simde__m128 simde_mm_cvtpu16_ps(simde__m64)':
../debian/include/simde/x86/sse.h:1198:33: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1198 | simde_mm_cvtpu16_ps (simde__m64 a) {
| ~~~~~~~~~~~^
../debian/include/simde/x86/sse.h: In function 'simde__m64 simde_mm_cvtt_ps2pi(simde__m128)':
../debian/include/simde/x86/sse.h:1331:34: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1331 | simde_mm_cvtt_ps2pi (simde__m128 a) {
| ~~~~~~~~~~~~^
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o split/last-split-main.o split/last-split-main.cc
In file included from ../debian/include/simde/x86/sse3.h:28,
from ../debian/include/simde/x86/ssse3.h:28,
from ../debian/include/simde/x86/sse4.1.h:28,
from ../debian/include/simde/x86/avx2.h:26,
from mcf_simd.hh:7,
from GappedXdropAligner.hh:50,
from Centroid.hh:6,
from lastal.cc:15:
../debian/include/simde/x86/sse2.h: In function 'simde__m128d simde_mm_cvtepi32_pd(simde__m128i)':
../debian/include/simde/x86/sse2.h:1476:36: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1476 | simde_mm_cvtepi32_pd (simde__m128i a) {
| ~~~~~~~~~~~~~^
In file included from /usr/include/c++/9/vector:67,
from alp/sls_alp_regression.hpp:43,
from alp/sls_fsa1.hpp:39,
from alp/sls_fsa1.cpp:36:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void Sls::IS1_general_simulation::calculate_weight_W1_for_fixed_lengths_using_recursions(long int, long int, double&, bool, std::vector<std::vector<double> >*, std::vector<std::vector<double> >*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
../debian/include/simde/x86/sse2.h: In function 'simde__m128 simde_mm_cvtepi32_ps(simde__m128i)':
../debian/include/simde/x86/sse2.h:1498:36: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1498 | simde_mm_cvtepi32_ps (simde__m128i a) {
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m128i simde_mm_cvtpd_epi32(simde__m128d)':
../debian/include/simde/x86/sse2.h:1522:36: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1522 | simde_mm_cvtpd_epi32 (simde__m128d a) {
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m64 simde_mm_cvtpd_pi32(simde__m128d)':
../debian/include/simde/x86/sse2.h:1545:35: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1545 | simde_mm_cvtpd_pi32 (simde__m128d a) {
| ~~~~~~~~~~~~~^
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
../debian/include/simde/x86/sse2.h: In function 'simde__m128 simde_mm_cvtpd_ps(simde__m128d)':
../debian/include/simde/x86/sse2.h:1567:33: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1567 | simde_mm_cvtpd_ps (simde__m128d a) {
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m128d simde_mm_cvtpi32_pd(simde__m64)':
../debian/include/simde/x86/sse2.h:1591:33: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1591 | simde_mm_cvtpi32_pd (simde__m64 a) {
| ~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m128i simde_mm_cvtps_epi32(simde__m128)':
../debian/include/simde/x86/sse2.h:1613:35: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1613 | simde_mm_cvtps_epi32 (simde__m128 a) {
| ~~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m128d simde_mm_cvtps_pd(simde__m128)':
../debian/include/simde/x86/sse2.h:1651:32: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1651 | simde_mm_cvtps_pd (simde__m128 a) {
| ~~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m64 simde_mm_cvttpd_pi32(simde__m128d)':
../debian/include/simde/x86/sse2.h:1899:36: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1899 | simde_mm_cvttpd_pi32 (simde__m128d a) {
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m128i simde_mm_cvttps_epi32(simde__m128)':
../debian/include/simde/x86/sse2.h:1920:36: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1920 | simde_mm_cvttps_epi32 (simde__m128 a) {
| ~~~~~~~~~~~~^
In file included from ../debian/include/simde/x86/../simde-common.h:27,
from ../debian/include/simde/x86/mmx.h:28,
from ../debian/include/simde/x86/sse.h:32,
from ../debian/include/simde/x86/sse2.h:34,
from ../debian/include/simde/x86/sse3.h:28,
from ../debian/include/simde/x86/ssse3.h:28,
from ../debian/include/simde/x86/sse4.1.h:28,
from ../debian/include/simde/x86/avx2.h:26,
from mcf_simd.hh:7,
from GappedXdropAligner.hh:50,
from Centroid.hh:6,
from lastal.cc:15:
../debian/include/simde/x86/avx.h: In function 'simde__m256d simde_mm256_load_pd(const double*)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'const double*' to 'const simde__m256d*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:2992:8: note: in expansion of macro 'SIMDE_CAST_ALIGN'
2992 | r = *SIMDE_CAST_ALIGN(32, simde__m256d const*, a);
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'simde__m256 simde_mm256_load_ps(const float*)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'const float*' to 'const simde__m256*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:3011:8: note: in expansion of macro 'SIMDE_CAST_ALIGN'
3011 | r = *SIMDE_CAST_ALIGN(32, simde__m256 const*, a);
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'void simde_mm256_store_ps(simde_float32*, simde__m256)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'simde_float32*' {aka 'float*'} to 'simde__m256*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:4214:4: note: in expansion of macro 'SIMDE_CAST_ALIGN'
4214 | *SIMDE_CAST_ALIGN(32, simde__m256*, mem_addr) = a;
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'void simde_mm256_store_pd(simde_float64*, simde__m256d)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'simde_float64*' {aka 'double*'} to 'simde__m256d*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:4229:4: note: in expansion of macro 'SIMDE_CAST_ALIGN'
4229 | *SIMDE_CAST_ALIGN(32, simde__m256d*, mem_addr) = a;
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'void simde_mm256_stream_ps(simde_float32*, simde__m256)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'simde_float32*' {aka 'float*'} to 'simde__m256*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:4328:4: note: in expansion of macro 'SIMDE_CAST_ALIGN'
4328 | *SIMDE_CAST_ALIGN(32, simde__m256*, mem_addr) = a;
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'void simde_mm256_stream_pd(simde_float64*, simde__m256d)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'simde_float64*' {aka 'double*'} to 'simde__m256d*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:4343:4: note: in expansion of macro 'SIMDE_CAST_ALIGN'
4343 | *SIMDE_CAST_ALIGN(32, simde__m256d*, mem_addr) = a;
| ^~~~~~~~~~~~~~~~
In file included from mcf_simd.hh:7,
from GappedXdropAligner.hh:50,
from Centroid.hh:6,
from lastal.cc:15:
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepi8_epi16(simde__m128i)':
../debian/include/simde/x86/avx2.h:339:41: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
339 | simde_mm256_cvtepi8_epi16 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepi8_epi32(simde__m128i)':
../debian/include/simde/x86/avx2.h:359:41: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
359 | simde_mm256_cvtepi8_epi32 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepi16_epi32(simde__m128i)':
../debian/include/simde/x86/avx2.h:397:42: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
397 | simde_mm256_cvtepi16_epi32 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepi16_epi64(simde__m128i)':
../debian/include/simde/x86/avx2.h:417:42: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
417 | simde_mm256_cvtepi16_epi64 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepi32_epi64(simde__m128i)':
../debian/include/simde/x86/avx2.h:437:42: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
437 | simde_mm256_cvtepi32_epi64 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepu8_epi16(simde__m128i)':
../debian/include/simde/x86/avx2.h:457:41: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
457 | simde_mm256_cvtepu8_epi16 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepu8_epi32(simde__m128i)':
../debian/include/simde/x86/avx2.h:477:41: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
477 | simde_mm256_cvtepu8_epi32 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepu16_epi32(simde__m128i)':
../debian/include/simde/x86/avx2.h:515:42: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
515 | simde_mm256_cvtepu16_epi32 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepu16_epi64(simde__m128i)':
../debian/include/simde/x86/avx2.h:535:42: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
535 | simde_mm256_cvtepu16_epi64 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepu32_epi64(simde__m128i)':
../debian/include/simde/x86/avx2.h:555:42: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
555 | simde_mm256_cvtepu32_epi64 (simde__m128i a){
| ~~~~~~~~~~~~~^
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o split/cbrc_split_aligner.o split/cbrc_split_aligner.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o split/last-split.o split/last-split.cc
/usr/include/c++/9/bits/stl_vector.h: In static member function 'static void Sls::test::collect_and_output_E_distr_upto_fixed_ALP(long int, std::string, Sls::two_dim_layer_alignment_algorithm<long int>&, Sls::IS1_general_simulation&, long int, double, long int, long int, Sls::FALP_set_of_parameters&, bool, bool, Sls::IS1_general*, double*, long int*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
split/cbrc_split_aligner.cc: In member function 'void cbrc::SplitAligner::initSpliceSignals(unsigned int)':
split/cbrc_split_aligner.cc:729:14: warning: comparison of integer expressions of different signedness: 'const unsigned int' and 'int' [-Wsign-compare]
729 | if (a.rend > chromEnd - chromBeg)
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In static member function 'static void Sls::test::collect_and_output_E_distr_upto_fixed_ALP_with_saving_of_states(bool, double&, long int, std::string, Sls::two_dim_layer_alignment_algorithm<long int>&, Sls::IS1_general_simulation&, long int, double, long int, long int, Sls::FALP_set_of_parameters&, bool&, bool, bool, double, bool&, long int&, double, bool, Sls::mult_states_type*, Sls::mult_states_type*&, long int&, bool, long int, Sls::IS1_general*, double*, long int*, bool)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from split/cbrc_unsplit_alignment.hh:12,
from split/cbrc_split_aligner.hh:7,
from split/cbrc_split_aligner.cc:4:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from split/cbrc_unsplit_alignment.hh:12,
from split/cbrc_split_aligner.hh:7,
from split/cbrc_split_aligner.cc:4:
/usr/include/c++/9/bits/stl_vector.h: In member function 'std::vector<double> cbrc::SplitAligner::marginalProbs(unsigned int, unsigned int, unsigned int, unsigned int) const':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In function 'static void Sls::test::collect_and_output_E_distr_upto_fixed_ALP_with_saving_of_states(bool, double&, long int, std::string, Sls::two_dim_layer_alignment_algorithm<long int>&, Sls::IS1_general_simulation&, long int, double, long int, long int, Sls::FALP_set_of_parameters&, bool&, bool, bool, double, bool&, long int&, double, bool, Sls::mult_states_type*, Sls::mult_states_type*&, long int&, bool, long int, Sls::IS1_general*, double*, long int*, bool)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
cc -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o last-merge-batches.o last-merge-batches.c
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o last-pair-probs.o last-pair-probs.cc
In file included from /usr/include/c++/9/algorithm:62,
from alp/sls_alp_regression.hpp:46,
from alp/sls_fsa1.hpp:39,
from alp/sls_fsa1.cpp:36:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from alp/sls_alp_regression.hpp:46,
from alp/sls_fsa1.hpp:39,
from alp/sls_fsa1.cpp:36:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from alp/sls_alp_regression.hpp:46,
from alp/sls_fsa1.hpp:39,
from alp/sls_fsa1.cpp:36:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In static member function 'static void Sls::test::calculate_ungapped_lambda(long int, double*, double*, long int**, double&)':
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o last-pair-probs-main.o last-pair-probs-main.cc
/usr/include/c++/9/bits/stl_algo.h: In static member function 'static void Sls::test::calculate_ungapped_lambda_general(double (*)(double, void*), void*, double&)':
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
g++ -DLAST_INT_TYPE=size_t -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o MultiSequence.o8 MultiSequence.cc
In file included from /usr/include/c++/9/vector:67,
from alp/sls_alp_regression.hpp:43,
from alp/sls_fsa1.hpp:39,
from alp/sls_fsa1.cpp:36:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void Sls::test::FSA_IS(bool, long int, long int, const long int*, const long int* const*, const double*, const double*, long int, long int, long int, long int, long int, long int, std::string, std::string, std::string, std::string, double, double, bool, double, double, long int, long int, long int, bool, bool, double, Sls::FALP_set_of_parameters&, Sls::par_test1_type*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
g++ -DLAST_INT_TYPE=size_t -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o MultiSequenceQual.o8 MultiSequenceQual.cc
In file included from /usr/include/c++/9/vector:72,
from last-pair-probs.hh:28,
from last-pair-probs.cc:4:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {Alignment}; _Tp = Alignment; _Alloc = std::allocator<Alignment>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<Alignment>::iterator' {aka '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from last-pair-probs.cc:9:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >; _Compare = __gnu_cxx::__ops::_Val_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
1820 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__move_merge_adaptive_backward(_BidirectionalIterator1, _BidirectionalIterator1, _BidirectionalIterator2, _BidirectionalIterator2, _BidirectionalIterator3, _Compare) [with _BidirectionalIterator1 = __gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >; _BidirectionalIterator2 = Alignment*; _BidirectionalIterator3 = __gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:2329:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2329 | __move_merge_adaptive_backward(_BidirectionalIterator1 __first1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2329:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:2329:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:2329:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h: In function '_RandomAccessIterator std::_V2::__rotate(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, std::random_access_iterator_tag) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >]':
/usr/include/c++/9/bits/stl_algo.h:1328:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
1328 | __rotate(_RandomAccessIterator __first,
| ^~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1328:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1328:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__merge_without_buffer(_BidirectionalIterator, _BidirectionalIterator, _BidirectionalIterator, _Distance, _Distance, _Compare) [with _BidirectionalIterator = __gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >; _Distance = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:2471:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2471 | __merge_without_buffer(_BidirectionalIterator __first,
| ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2471:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:2471:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1443:27: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
1443 | return std::__rotate(__first, __middle, __last,
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
1444 | std::__iterator_category(__first));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2512:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2512 | std::__merge_without_buffer(__first, __first_cut, __new_middle,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2513 | __len11, __len22, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2514:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2514 | std::__merge_without_buffer(__new_middle, __second_cut, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2515 | __len1 - __len11, __len2 - __len22, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__inplace_stable_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:2755:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2755 | __inplace_stable_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2755:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2760 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2764:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2764 | std::__inplace_stable_sort(__first, __middle, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2765:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2765 | std::__inplace_stable_sort(__middle, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2766 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2767 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2768 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2769 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__merge_adaptive(_BidirectionalIterator, _BidirectionalIterator, _BidirectionalIterator, _Distance, _Distance, _Pointer, _Distance, _Compare) [with _BidirectionalIterator = __gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >; _Distance = int; _Pointer = Alignment*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:2410:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2410 | __merge_adaptive(_BidirectionalIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2410:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:2410:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:2426:39: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2426 | std::__move_merge_adaptive_backward(__first, __middle, __buffer,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2427 | __buffer_end, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2426:39: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1443:27: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
1443 | return std::__rotate(__first, __middle, __last,
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
1444 | std::__iterator_category(__first));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2458:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2458 | std::__merge_adaptive(__first, __first_cut, __new_middle, __len11,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2459 | __len22, __buffer, __buffer_size, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2460:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2460 | std::__merge_adaptive(__new_middle, __second_cut, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2461 | __len1 - __len11,
| ~~~~~~~~~~~~~~~~~
2462 | __len2 - __len22, __buffer,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~
2463 | __buffer_size, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function '_OutputIterator std::__move_merge(_InputIterator, _InputIterator, _InputIterator, _InputIterator, _OutputIterator, _Compare) [with _InputIterator = __gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >; _OutputIterator = Alignment*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:2633:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2633 | __move_merge(_InputIterator __first1, _InputIterator __last1,
| ^~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2633:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:2633:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:2633:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:2633:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:2633:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h: In function '_OutputIterator std::__move_merge(_InputIterator, _InputIterator, _InputIterator, _InputIterator, _OutputIterator, _Compare) [with _InputIterator = Alignment*; _OutputIterator = __gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:2633:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__merge_sort_with_buffer(_RandomAccessIterator, _RandomAccessIterator, _Pointer, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >; _Pointer = Alignment*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:2699:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2699 | __merge_sort_with_buffer(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2699:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:2689:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2689 | std::__insertion_sort(__first, __first + __chunk_size, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2692:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2692 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2668:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2668 | __result = std::__move_merge(__first, __first + __step_size,
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2669 | __first + __step_size,
| ~~~~~~~~~~~~~~~~~~~~~~
2670 | __first + __two_step,
| ~~~~~~~~~~~~~~~~~~~~~
2671 | __result, __comp);
| ~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2668:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:2676:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2676 | std::__move_merge(__first, __first + __step_size,
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2677 | __first + __step_size, __last, __result, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2676:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:2668:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2668 | __result = std::__move_merge(__first, __first + __step_size,
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2669 | __first + __step_size,
| ~~~~~~~~~~~~~~~~~~~~~~
2670 | __first + __two_step,
| ~~~~~~~~~~~~~~~~~~~~~
2671 | __result, __comp);
| ~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2676:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2676 | std::__move_merge(__first, __first + __step_size,
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2677 | __first + __step_size, __last, __result, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2676:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:2692:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2692 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__stable_sort_adaptive(_RandomAccessIterator, _RandomAccessIterator, _Pointer, _Distance, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >; _Pointer = Alignment*; _Distance = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:2726:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2726 | __stable_sort_adaptive(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2726:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:2726:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:2735:31: note: parameter passing for argument of type 'const __gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2735 | std::__stable_sort_adaptive(__first, __middle, __buffer,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2736 | __buffer_size, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2737:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2737 | std::__stable_sort_adaptive(__middle, __last, __buffer,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
2738 | __buffer_size, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2742:33: note: parameter passing for argument of type 'const __gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2742 | std::__merge_sort_with_buffer(__first, __middle, __buffer, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2743:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2743 | std::__merge_sort_with_buffer(__middle, __last, __buffer, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2745:28: note: parameter passing for argument of type 'const __gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2745 | std::__merge_adaptive(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2746 | _Distance(__middle - __first),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2747 | _Distance(__last - __middle),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2748 | __buffer, __buffer_size,
| ~~~~~~~~~~~~~~~~~~~~~~~~
2749 | __comp);
| ~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from last-pair-probs.hh:28,
from last-pair-probs.cc:4:
/usr/include/c++/9/bits/vector.tcc: In function 'bool readBatch(std::istream&, char, double, const std::set<std::__cxx11::basic_string<char> >&, std::vector<char>&, std::vector<const char*>&, std::vector<Alignment>&)':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from last-pair-probs.cc:9:
/usr/include/c++/9/bits/stl_algo.h:5037:29: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
5037 | std::__stable_sort_adaptive(__first, __last, __buf.begin(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
5038 | _DistanceType(__buf.size()), __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2760 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2760 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2760 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2760 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2760 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2764:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2764 | std::__inplace_stable_sort(__first, __middle, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2765:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2765 | std::__inplace_stable_sort(__middle, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2766 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2767 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2768 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2769 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2760 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2764:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2764 | std::__inplace_stable_sort(__first, __middle, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2765:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2765 | std::__inplace_stable_sort(__middle, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2766 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2767 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2768 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2769 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2766 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2767 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2768 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2769 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2760 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2760 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2764:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2764 | std::__inplace_stable_sort(__first, __middle, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2765:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2765 | std::__inplace_stable_sort(__middle, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2766 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2767 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2768 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2769 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2760 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2764:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2764 | std::__inplace_stable_sort(__first, __middle, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2765:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2765 | std::__inplace_stable_sort(__middle, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2766 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2767 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2768 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2769 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2766 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2767 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2768 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2769 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2766 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2767 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2768 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2769 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2760 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2760 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2760 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2764:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2764 | std::__inplace_stable_sort(__first, __middle, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2765:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2765 | std::__inplace_stable_sort(__middle, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2766 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2767 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2768 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2769 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2760 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2764:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2764 | std::__inplace_stable_sort(__first, __middle, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2765:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2765 | std::__inplace_stable_sort(__middle, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2766 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2767 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2768 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2769 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2766 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2767 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2768 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2769 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2760 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2760 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2764:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2764 | std::__inplace_stable_sort(__first, __middle, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2765:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2765 | std::__inplace_stable_sort(__middle, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2766 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2767 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2768 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2769 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2760 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2764:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2764 | std::__inplace_stable_sort(__first, __middle, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2765:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2765 | std::__inplace_stable_sort(__middle, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2766 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2767 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2768 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2769 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2766 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2767 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2768 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2769 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2766 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2767 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2768 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2769 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2766 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2767 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2768 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2769 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2760 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2760 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2760 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2760 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2764:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2764 | std::__inplace_stable_sort(__first, __middle, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2765:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2765 | std::__inplace_stable_sort(__middle, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2766 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2767 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2768 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2769 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2760 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2764:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2764 | std::__inplace_stable_sort(__first, __middle, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2765:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2765 | std::__inplace_stable_sort(__middle, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2766 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2767 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2768 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2769 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2766 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2767 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2768 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2769 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2760 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2760 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2764:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2764 | std::__inplace_stable_sort(__first, __middle, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2765:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2765 | std::__inplace_stable_sort(__middle, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2766 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2767 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2768 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2769 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2760 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2764:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2764 | std::__inplace_stable_sort(__first, __middle, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2765:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2765 | std::__inplace_stable_sort(__middle, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2766 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2767 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2768 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2769 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2766 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2767 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2768 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2769 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2766 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2767 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2768 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2769 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2760 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2760 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2760 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2764:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2764 | std::__inplace_stable_sort(__first, __middle, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2765:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2765 | std::__inplace_stable_sort(__middle, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2766 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2767 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2768 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2769 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2760 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2764:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2764 | std::__inplace_stable_sort(__first, __middle, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2765:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2765 | std::__inplace_stable_sort(__middle, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2766 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2767 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2768 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2769 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2766 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2767 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2768 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2769 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2760 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2760 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2764:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2764 | std::__inplace_stable_sort(__first, __middle, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2765:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2765 | std::__inplace_stable_sort(__middle, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2766 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2767 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2768 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2769 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2760:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2760 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2764:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2764 | std::__inplace_stable_sort(__first, __middle, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2765:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2765 | std::__inplace_stable_sort(__middle, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2766 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2767 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2768 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2769 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2766 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2767 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2768 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2769 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2766 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2767 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2768 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2769 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2766 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2767 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2768 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2769 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:2766:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >' changed in GCC 7.1
2766 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2767 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2768 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2769 | __comp);
| ~~~~~~~
g++ -DLAST_INT_TYPE=size_t -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o SubsetSuffixArray.o8 SubsetSuffixArray.cc
g++ -DLAST_INT_TYPE=size_t -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o SubsetSuffixArraySort.o8 SubsetSuffixArraySort.cc
g++ -DLAST_INT_TYPE=size_t -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o lastdb.o8 lastdb.cc
g++ -DLAST_INT_TYPE=size_t -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o Alignment.o8 Alignment.cc
In file included from ../debian/include/simde/x86/sse2.h:34,
from ../debian/include/simde/x86/sse3.h:28,
from ../debian/include/simde/x86/ssse3.h:28,
from ../debian/include/simde/x86/sse4.1.h:28,
from ../debian/include/simde/x86/avx2.h:26,
from mcf_simd.hh:7,
from GappedXdropAligner.hh:50,
from Centroid.hh:6,
from Alignment.cc:5:
../debian/include/simde/x86/sse.h: In function 'simde__m128 simde_mm_cvt_pi2ps(simde__m128, simde__m64)':
../debian/include/simde/x86/sse.h:968:47: warning: parameter 'b' set but not used [-Wunused-but-set-parameter]
968 | simde_mm_cvt_pi2ps (simde__m128 a, simde__m64 b) {
| ~~~~~~~~~~~^
../debian/include/simde/x86/sse.h: In function 'simde__m64 simde_mm_cvt_ps2pi(simde__m128)':
../debian/include/simde/x86/sse.h:991:33: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
991 | simde_mm_cvt_ps2pi (simde__m128 a) {
| ~~~~~~~~~~~~^
../debian/include/simde/x86/sse.h: In function 'simde__m128 simde_mm_cvtpi16_ps(simde__m64)':
../debian/include/simde/x86/sse.h:1046:33: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1046 | simde_mm_cvtpi16_ps (simde__m64 a) {
| ~~~~~~~~~~~^
../debian/include/simde/x86/sse.h: In function 'simde__m128 simde_mm_cvtpi32_ps(simde__m128, simde__m64)':
../debian/include/simde/x86/sse.h:1068:48: warning: parameter 'b' set but not used [-Wunused-but-set-parameter]
1068 | simde_mm_cvtpi32_ps (simde__m128 a, simde__m64 b) {
| ~~~~~~~~~~~^
../debian/include/simde/x86/sse.h: In function 'simde__m128 simde_mm_cvtpi32x2_ps(simde__m64, simde__m64)':
../debian/include/simde/x86/sse.h:1091:35: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1091 | simde_mm_cvtpi32x2_ps (simde__m64 a, simde__m64 b) {
| ~~~~~~~~~~~^
../debian/include/simde/x86/sse.h:1091:49: warning: parameter 'b' set but not used [-Wunused-but-set-parameter]
1091 | simde_mm_cvtpi32x2_ps (simde__m64 a, simde__m64 b) {
| ~~~~~~~~~~~^
../debian/include/simde/x86/sse.h: In function 'simde__m64 simde_mm_cvtps_pi16(simde__m128)':
../debian/include/simde/x86/sse.h:1134:34: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1134 | simde_mm_cvtps_pi16 (simde__m128 a) {
| ~~~~~~~~~~~~^
../debian/include/simde/x86/sse.h: In function 'simde__m64 simde_mm_cvtps_pi32(simde__m128)':
../debian/include/simde/x86/sse.h:1156:34: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1156 | simde_mm_cvtps_pi32 (simde__m128 a) {
| ~~~~~~~~~~~~^
../debian/include/simde/x86/sse.h: In function 'simde__m128 simde_mm_cvtpu16_ps(simde__m64)':
../debian/include/simde/x86/sse.h:1198:33: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1198 | simde_mm_cvtpu16_ps (simde__m64 a) {
| ~~~~~~~~~~~^
../debian/include/simde/x86/sse.h: In function 'simde__m64 simde_mm_cvtt_ps2pi(simde__m128)':
../debian/include/simde/x86/sse.h:1331:34: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1331 | simde_mm_cvtt_ps2pi (simde__m128 a) {
| ~~~~~~~~~~~~^
In file included from ../debian/include/simde/x86/sse3.h:28,
from ../debian/include/simde/x86/ssse3.h:28,
from ../debian/include/simde/x86/sse4.1.h:28,
from ../debian/include/simde/x86/avx2.h:26,
from mcf_simd.hh:7,
from GappedXdropAligner.hh:50,
from Centroid.hh:6,
from Alignment.cc:5:
../debian/include/simde/x86/sse2.h: In function 'simde__m128d simde_mm_cvtepi32_pd(simde__m128i)':
../debian/include/simde/x86/sse2.h:1476:36: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1476 | simde_mm_cvtepi32_pd (simde__m128i a) {
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m128 simde_mm_cvtepi32_ps(simde__m128i)':
../debian/include/simde/x86/sse2.h:1498:36: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1498 | simde_mm_cvtepi32_ps (simde__m128i a) {
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m128i simde_mm_cvtpd_epi32(simde__m128d)':
../debian/include/simde/x86/sse2.h:1522:36: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1522 | simde_mm_cvtpd_epi32 (simde__m128d a) {
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m64 simde_mm_cvtpd_pi32(simde__m128d)':
../debian/include/simde/x86/sse2.h:1545:35: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1545 | simde_mm_cvtpd_pi32 (simde__m128d a) {
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m128 simde_mm_cvtpd_ps(simde__m128d)':
../debian/include/simde/x86/sse2.h:1567:33: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1567 | simde_mm_cvtpd_ps (simde__m128d a) {
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m128d simde_mm_cvtpi32_pd(simde__m64)':
../debian/include/simde/x86/sse2.h:1591:33: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1591 | simde_mm_cvtpi32_pd (simde__m64 a) {
| ~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m128i simde_mm_cvtps_epi32(simde__m128)':
../debian/include/simde/x86/sse2.h:1613:35: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1613 | simde_mm_cvtps_epi32 (simde__m128 a) {
| ~~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m128d simde_mm_cvtps_pd(simde__m128)':
../debian/include/simde/x86/sse2.h:1651:32: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1651 | simde_mm_cvtps_pd (simde__m128 a) {
| ~~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m64 simde_mm_cvttpd_pi32(simde__m128d)':
../debian/include/simde/x86/sse2.h:1899:36: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1899 | simde_mm_cvttpd_pi32 (simde__m128d a) {
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m128i simde_mm_cvttps_epi32(simde__m128)':
../debian/include/simde/x86/sse2.h:1920:36: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1920 | simde_mm_cvttps_epi32 (simde__m128 a) {
| ~~~~~~~~~~~~^
In file included from ../debian/include/simde/x86/../simde-common.h:27,
from ../debian/include/simde/x86/mmx.h:28,
from ../debian/include/simde/x86/sse.h:32,
from ../debian/include/simde/x86/sse2.h:34,
from ../debian/include/simde/x86/sse3.h:28,
from ../debian/include/simde/x86/ssse3.h:28,
from ../debian/include/simde/x86/sse4.1.h:28,
from ../debian/include/simde/x86/avx2.h:26,
from mcf_simd.hh:7,
from GappedXdropAligner.hh:50,
from Centroid.hh:6,
from Alignment.cc:5:
../debian/include/simde/x86/avx.h: In function 'simde__m256d simde_mm256_load_pd(const double*)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'const double*' to 'const simde__m256d*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:2992:8: note: in expansion of macro 'SIMDE_CAST_ALIGN'
2992 | r = *SIMDE_CAST_ALIGN(32, simde__m256d const*, a);
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'simde__m256 simde_mm256_load_ps(const float*)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'const float*' to 'const simde__m256*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:3011:8: note: in expansion of macro 'SIMDE_CAST_ALIGN'
3011 | r = *SIMDE_CAST_ALIGN(32, simde__m256 const*, a);
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'void simde_mm256_store_ps(simde_float32*, simde__m256)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'simde_float32*' {aka 'float*'} to 'simde__m256*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:4214:4: note: in expansion of macro 'SIMDE_CAST_ALIGN'
4214 | *SIMDE_CAST_ALIGN(32, simde__m256*, mem_addr) = a;
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'void simde_mm256_store_pd(simde_float64*, simde__m256d)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'simde_float64*' {aka 'double*'} to 'simde__m256d*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:4229:4: note: in expansion of macro 'SIMDE_CAST_ALIGN'
4229 | *SIMDE_CAST_ALIGN(32, simde__m256d*, mem_addr) = a;
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'void simde_mm256_stream_ps(simde_float32*, simde__m256)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'simde_float32*' {aka 'float*'} to 'simde__m256*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:4328:4: note: in expansion of macro 'SIMDE_CAST_ALIGN'
4328 | *SIMDE_CAST_ALIGN(32, simde__m256*, mem_addr) = a;
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'void simde_mm256_stream_pd(simde_float64*, simde__m256d)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'simde_float64*' {aka 'double*'} to 'simde__m256d*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:4343:4: note: in expansion of macro 'SIMDE_CAST_ALIGN'
4343 | *SIMDE_CAST_ALIGN(32, simde__m256d*, mem_addr) = a;
| ^~~~~~~~~~~~~~~~
In file included from mcf_simd.hh:7,
from GappedXdropAligner.hh:50,
from Centroid.hh:6,
from Alignment.cc:5:
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepi8_epi16(simde__m128i)':
../debian/include/simde/x86/avx2.h:339:41: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
339 | simde_mm256_cvtepi8_epi16 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepi8_epi32(simde__m128i)':
../debian/include/simde/x86/avx2.h:359:41: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
359 | simde_mm256_cvtepi8_epi32 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepi16_epi32(simde__m128i)':
../debian/include/simde/x86/avx2.h:397:42: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
397 | simde_mm256_cvtepi16_epi32 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepi16_epi64(simde__m128i)':
../debian/include/simde/x86/avx2.h:417:42: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
417 | simde_mm256_cvtepi16_epi64 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepi32_epi64(simde__m128i)':
../debian/include/simde/x86/avx2.h:437:42: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
437 | simde_mm256_cvtepi32_epi64 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepu8_epi16(simde__m128i)':
../debian/include/simde/x86/avx2.h:457:41: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
457 | simde_mm256_cvtepu8_epi16 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepu8_epi32(simde__m128i)':
../debian/include/simde/x86/avx2.h:477:41: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
477 | simde_mm256_cvtepu8_epi32 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepu16_epi32(simde__m128i)':
../debian/include/simde/x86/avx2.h:515:42: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
515 | simde_mm256_cvtepu16_epi32 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepu16_epi64(simde__m128i)':
../debian/include/simde/x86/avx2.h:535:42: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
535 | simde_mm256_cvtepu16_epi64 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepu32_epi64(simde__m128i)':
../debian/include/simde/x86/avx2.h:555:42: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
555 | simde_mm256_cvtepu32_epi64 (simde__m128i a){
| ~~~~~~~~~~~~~^
g++ -DLAST_INT_TYPE=size_t -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o AlignmentPot.o8 AlignmentPot.cc
g++ -DLAST_INT_TYPE=size_t -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o AlignmentWrite.o8 AlignmentWrite.cc
g++ -DLAST_INT_TYPE=size_t -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o Centroid.o8 Centroid.cc
g++ -DLAST_INT_TYPE=size_t -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o DiagonalTable.o8 DiagonalTable.cc
In file included from ../debian/include/simde/x86/sse2.h:34,
from ../debian/include/simde/x86/sse3.h:28,
from ../debian/include/simde/x86/ssse3.h:28,
from ../debian/include/simde/x86/sse4.1.h:28,
from ../debian/include/simde/x86/avx2.h:26,
from mcf_simd.hh:7,
from GappedXdropAligner.hh:50,
from Centroid.hh:6,
from Centroid.cc:4:
../debian/include/simde/x86/sse.h: In function 'simde__m128 simde_mm_cvt_pi2ps(simde__m128, simde__m64)':
../debian/include/simde/x86/sse.h:968:47: warning: parameter 'b' set but not used [-Wunused-but-set-parameter]
968 | simde_mm_cvt_pi2ps (simde__m128 a, simde__m64 b) {
| ~~~~~~~~~~~^
../debian/include/simde/x86/sse.h: In function 'simde__m64 simde_mm_cvt_ps2pi(simde__m128)':
../debian/include/simde/x86/sse.h:991:33: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
991 | simde_mm_cvt_ps2pi (simde__m128 a) {
| ~~~~~~~~~~~~^
../debian/include/simde/x86/sse.h: In function 'simde__m128 simde_mm_cvtpi16_ps(simde__m64)':
../debian/include/simde/x86/sse.h:1046:33: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1046 | simde_mm_cvtpi16_ps (simde__m64 a) {
| ~~~~~~~~~~~^
../debian/include/simde/x86/sse.h: In function 'simde__m128 simde_mm_cvtpi32_ps(simde__m128, simde__m64)':
../debian/include/simde/x86/sse.h:1068:48: warning: parameter 'b' set but not used [-Wunused-but-set-parameter]
1068 | simde_mm_cvtpi32_ps (simde__m128 a, simde__m64 b) {
| ~~~~~~~~~~~^
../debian/include/simde/x86/sse.h: In function 'simde__m128 simde_mm_cvtpi32x2_ps(simde__m64, simde__m64)':
../debian/include/simde/x86/sse.h:1091:35: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1091 | simde_mm_cvtpi32x2_ps (simde__m64 a, simde__m64 b) {
| ~~~~~~~~~~~^
../debian/include/simde/x86/sse.h:1091:49: warning: parameter 'b' set but not used [-Wunused-but-set-parameter]
1091 | simde_mm_cvtpi32x2_ps (simde__m64 a, simde__m64 b) {
| ~~~~~~~~~~~^
../debian/include/simde/x86/sse.h: In function 'simde__m64 simde_mm_cvtps_pi16(simde__m128)':
../debian/include/simde/x86/sse.h:1134:34: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1134 | simde_mm_cvtps_pi16 (simde__m128 a) {
| ~~~~~~~~~~~~^
../debian/include/simde/x86/sse.h: In function 'simde__m64 simde_mm_cvtps_pi32(simde__m128)':
../debian/include/simde/x86/sse.h:1156:34: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1156 | simde_mm_cvtps_pi32 (simde__m128 a) {
| ~~~~~~~~~~~~^
../debian/include/simde/x86/sse.h: In function 'simde__m128 simde_mm_cvtpu16_ps(simde__m64)':
../debian/include/simde/x86/sse.h:1198:33: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1198 | simde_mm_cvtpu16_ps (simde__m64 a) {
| ~~~~~~~~~~~^
../debian/include/simde/x86/sse.h: In function 'simde__m64 simde_mm_cvtt_ps2pi(simde__m128)':
../debian/include/simde/x86/sse.h:1331:34: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1331 | simde_mm_cvtt_ps2pi (simde__m128 a) {
| ~~~~~~~~~~~~^
In file included from ../debian/include/simde/x86/sse3.h:28,
from ../debian/include/simde/x86/ssse3.h:28,
from ../debian/include/simde/x86/sse4.1.h:28,
from ../debian/include/simde/x86/avx2.h:26,
from mcf_simd.hh:7,
from GappedXdropAligner.hh:50,
from Centroid.hh:6,
from Centroid.cc:4:
../debian/include/simde/x86/sse2.h: In function 'simde__m128d simde_mm_cvtepi32_pd(simde__m128i)':
../debian/include/simde/x86/sse2.h:1476:36: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1476 | simde_mm_cvtepi32_pd (simde__m128i a) {
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m128 simde_mm_cvtepi32_ps(simde__m128i)':
../debian/include/simde/x86/sse2.h:1498:36: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1498 | simde_mm_cvtepi32_ps (simde__m128i a) {
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m128i simde_mm_cvtpd_epi32(simde__m128d)':
../debian/include/simde/x86/sse2.h:1522:36: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1522 | simde_mm_cvtpd_epi32 (simde__m128d a) {
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m64 simde_mm_cvtpd_pi32(simde__m128d)':
../debian/include/simde/x86/sse2.h:1545:35: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1545 | simde_mm_cvtpd_pi32 (simde__m128d a) {
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m128 simde_mm_cvtpd_ps(simde__m128d)':
../debian/include/simde/x86/sse2.h:1567:33: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1567 | simde_mm_cvtpd_ps (simde__m128d a) {
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m128d simde_mm_cvtpi32_pd(simde__m64)':
../debian/include/simde/x86/sse2.h:1591:33: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1591 | simde_mm_cvtpi32_pd (simde__m64 a) {
| ~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m128i simde_mm_cvtps_epi32(simde__m128)':
../debian/include/simde/x86/sse2.h:1613:35: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1613 | simde_mm_cvtps_epi32 (simde__m128 a) {
| ~~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m128d simde_mm_cvtps_pd(simde__m128)':
../debian/include/simde/x86/sse2.h:1651:32: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1651 | simde_mm_cvtps_pd (simde__m128 a) {
| ~~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m64 simde_mm_cvttpd_pi32(simde__m128d)':
../debian/include/simde/x86/sse2.h:1899:36: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1899 | simde_mm_cvttpd_pi32 (simde__m128d a) {
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m128i simde_mm_cvttps_epi32(simde__m128)':
../debian/include/simde/x86/sse2.h:1920:36: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1920 | simde_mm_cvttps_epi32 (simde__m128 a) {
| ~~~~~~~~~~~~^
In file included from ../debian/include/simde/x86/../simde-common.h:27,
from ../debian/include/simde/x86/mmx.h:28,
from ../debian/include/simde/x86/sse.h:32,
from ../debian/include/simde/x86/sse2.h:34,
from ../debian/include/simde/x86/sse3.h:28,
from ../debian/include/simde/x86/ssse3.h:28,
from ../debian/include/simde/x86/sse4.1.h:28,
from ../debian/include/simde/x86/avx2.h:26,
from mcf_simd.hh:7,
from GappedXdropAligner.hh:50,
from Centroid.hh:6,
from Centroid.cc:4:
../debian/include/simde/x86/avx.h: In function 'simde__m256d simde_mm256_load_pd(const double*)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'const double*' to 'const simde__m256d*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:2992:8: note: in expansion of macro 'SIMDE_CAST_ALIGN'
2992 | r = *SIMDE_CAST_ALIGN(32, simde__m256d const*, a);
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'simde__m256 simde_mm256_load_ps(const float*)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'const float*' to 'const simde__m256*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:3011:8: note: in expansion of macro 'SIMDE_CAST_ALIGN'
3011 | r = *SIMDE_CAST_ALIGN(32, simde__m256 const*, a);
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'void simde_mm256_store_ps(simde_float32*, simde__m256)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'simde_float32*' {aka 'float*'} to 'simde__m256*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:4214:4: note: in expansion of macro 'SIMDE_CAST_ALIGN'
4214 | *SIMDE_CAST_ALIGN(32, simde__m256*, mem_addr) = a;
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'void simde_mm256_store_pd(simde_float64*, simde__m256d)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'simde_float64*' {aka 'double*'} to 'simde__m256d*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:4229:4: note: in expansion of macro 'SIMDE_CAST_ALIGN'
4229 | *SIMDE_CAST_ALIGN(32, simde__m256d*, mem_addr) = a;
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'void simde_mm256_stream_ps(simde_float32*, simde__m256)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'simde_float32*' {aka 'float*'} to 'simde__m256*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:4328:4: note: in expansion of macro 'SIMDE_CAST_ALIGN'
4328 | *SIMDE_CAST_ALIGN(32, simde__m256*, mem_addr) = a;
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'void simde_mm256_stream_pd(simde_float64*, simde__m256d)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'simde_float64*' {aka 'double*'} to 'simde__m256d*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:4343:4: note: in expansion of macro 'SIMDE_CAST_ALIGN'
4343 | *SIMDE_CAST_ALIGN(32, simde__m256d*, mem_addr) = a;
| ^~~~~~~~~~~~~~~~
In file included from mcf_simd.hh:7,
from GappedXdropAligner.hh:50,
from Centroid.hh:6,
from Centroid.cc:4:
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepi8_epi16(simde__m128i)':
../debian/include/simde/x86/avx2.h:339:41: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
339 | simde_mm256_cvtepi8_epi16 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepi8_epi32(simde__m128i)':
../debian/include/simde/x86/avx2.h:359:41: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
359 | simde_mm256_cvtepi8_epi32 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepi16_epi32(simde__m128i)':
../debian/include/simde/x86/avx2.h:397:42: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
397 | simde_mm256_cvtepi16_epi32 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepi16_epi64(simde__m128i)':
../debian/include/simde/x86/avx2.h:417:42: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
417 | simde_mm256_cvtepi16_epi64 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepi32_epi64(simde__m128i)':
../debian/include/simde/x86/avx2.h:437:42: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
437 | simde_mm256_cvtepi32_epi64 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepu8_epi16(simde__m128i)':
../debian/include/simde/x86/avx2.h:457:41: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
457 | simde_mm256_cvtepu8_epi16 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepu8_epi32(simde__m128i)':
../debian/include/simde/x86/avx2.h:477:41: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
477 | simde_mm256_cvtepu8_epi32 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepu16_epi32(simde__m128i)':
../debian/include/simde/x86/avx2.h:515:42: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
515 | simde_mm256_cvtepu16_epi32 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepu16_epi64(simde__m128i)':
../debian/include/simde/x86/avx2.h:535:42: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
535 | simde_mm256_cvtepu16_epi64 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepu32_epi64(simde__m128i)':
../debian/include/simde/x86/avx2.h:555:42: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
555 | simde_mm256_cvtepu32_epi64 (simde__m128i a){
| ~~~~~~~~~~~~~^
g++ -DLAST_INT_TYPE=size_t -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o SegmentPair.o8 SegmentPair.cc
g++ -DLAST_INT_TYPE=size_t -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o SegmentPairPot.o8 SegmentPairPot.cc
g++ -DLAST_INT_TYPE=size_t -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o SubsetSuffixArraySearch.o8 SubsetSuffixArraySearch.cc
g++ -DLAST_INT_TYPE=size_t -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o lastal.o8 lastal.cc
g++ -DLAST_INT_TYPE=size_t -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o split/cbrc_split_aligner.o8 split/cbrc_split_aligner.cc
In file included from ../debian/include/simde/x86/sse2.h:34,
from ../debian/include/simde/x86/sse3.h:28,
from ../debian/include/simde/x86/ssse3.h:28,
from ../debian/include/simde/x86/sse4.1.h:28,
from ../debian/include/simde/x86/avx2.h:26,
from mcf_simd.hh:7,
from GappedXdropAligner.hh:50,
from Centroid.hh:6,
from lastal.cc:15:
../debian/include/simde/x86/sse.h: In function 'simde__m128 simde_mm_cvt_pi2ps(simde__m128, simde__m64)':
../debian/include/simde/x86/sse.h:968:47: warning: parameter 'b' set but not used [-Wunused-but-set-parameter]
968 | simde_mm_cvt_pi2ps (simde__m128 a, simde__m64 b) {
| ~~~~~~~~~~~^
../debian/include/simde/x86/sse.h: In function 'simde__m64 simde_mm_cvt_ps2pi(simde__m128)':
../debian/include/simde/x86/sse.h:991:33: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
991 | simde_mm_cvt_ps2pi (simde__m128 a) {
| ~~~~~~~~~~~~^
../debian/include/simde/x86/sse.h: In function 'simde__m128 simde_mm_cvtpi16_ps(simde__m64)':
../debian/include/simde/x86/sse.h:1046:33: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1046 | simde_mm_cvtpi16_ps (simde__m64 a) {
| ~~~~~~~~~~~^
../debian/include/simde/x86/sse.h: In function 'simde__m128 simde_mm_cvtpi32_ps(simde__m128, simde__m64)':
../debian/include/simde/x86/sse.h:1068:48: warning: parameter 'b' set but not used [-Wunused-but-set-parameter]
1068 | simde_mm_cvtpi32_ps (simde__m128 a, simde__m64 b) {
| ~~~~~~~~~~~^
../debian/include/simde/x86/sse.h: In function 'simde__m128 simde_mm_cvtpi32x2_ps(simde__m64, simde__m64)':
../debian/include/simde/x86/sse.h:1091:35: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1091 | simde_mm_cvtpi32x2_ps (simde__m64 a, simde__m64 b) {
| ~~~~~~~~~~~^
../debian/include/simde/x86/sse.h:1091:49: warning: parameter 'b' set but not used [-Wunused-but-set-parameter]
1091 | simde_mm_cvtpi32x2_ps (simde__m64 a, simde__m64 b) {
| ~~~~~~~~~~~^
../debian/include/simde/x86/sse.h: In function 'simde__m64 simde_mm_cvtps_pi16(simde__m128)':
../debian/include/simde/x86/sse.h:1134:34: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1134 | simde_mm_cvtps_pi16 (simde__m128 a) {
| ~~~~~~~~~~~~^
../debian/include/simde/x86/sse.h: In function 'simde__m64 simde_mm_cvtps_pi32(simde__m128)':
../debian/include/simde/x86/sse.h:1156:34: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1156 | simde_mm_cvtps_pi32 (simde__m128 a) {
| ~~~~~~~~~~~~^
../debian/include/simde/x86/sse.h: In function 'simde__m128 simde_mm_cvtpu16_ps(simde__m64)':
../debian/include/simde/x86/sse.h:1198:33: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1198 | simde_mm_cvtpu16_ps (simde__m64 a) {
| ~~~~~~~~~~~^
../debian/include/simde/x86/sse.h: In function 'simde__m64 simde_mm_cvtt_ps2pi(simde__m128)':
../debian/include/simde/x86/sse.h:1331:34: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1331 | simde_mm_cvtt_ps2pi (simde__m128 a) {
| ~~~~~~~~~~~~^
In file included from ../debian/include/simde/x86/sse3.h:28,
from ../debian/include/simde/x86/ssse3.h:28,
from ../debian/include/simde/x86/sse4.1.h:28,
from ../debian/include/simde/x86/avx2.h:26,
from mcf_simd.hh:7,
from GappedXdropAligner.hh:50,
from Centroid.hh:6,
from lastal.cc:15:
../debian/include/simde/x86/sse2.h: In function 'simde__m128d simde_mm_cvtepi32_pd(simde__m128i)':
../debian/include/simde/x86/sse2.h:1476:36: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1476 | simde_mm_cvtepi32_pd (simde__m128i a) {
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m128 simde_mm_cvtepi32_ps(simde__m128i)':
../debian/include/simde/x86/sse2.h:1498:36: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1498 | simde_mm_cvtepi32_ps (simde__m128i a) {
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m128i simde_mm_cvtpd_epi32(simde__m128d)':
../debian/include/simde/x86/sse2.h:1522:36: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1522 | simde_mm_cvtpd_epi32 (simde__m128d a) {
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m64 simde_mm_cvtpd_pi32(simde__m128d)':
../debian/include/simde/x86/sse2.h:1545:35: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1545 | simde_mm_cvtpd_pi32 (simde__m128d a) {
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m128 simde_mm_cvtpd_ps(simde__m128d)':
../debian/include/simde/x86/sse2.h:1567:33: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1567 | simde_mm_cvtpd_ps (simde__m128d a) {
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m128d simde_mm_cvtpi32_pd(simde__m64)':
../debian/include/simde/x86/sse2.h:1591:33: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1591 | simde_mm_cvtpi32_pd (simde__m64 a) {
| ~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m128i simde_mm_cvtps_epi32(simde__m128)':
../debian/include/simde/x86/sse2.h:1613:35: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1613 | simde_mm_cvtps_epi32 (simde__m128 a) {
| ~~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m128d simde_mm_cvtps_pd(simde__m128)':
../debian/include/simde/x86/sse2.h:1651:32: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1651 | simde_mm_cvtps_pd (simde__m128 a) {
| ~~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m64 simde_mm_cvttpd_pi32(simde__m128d)':
../debian/include/simde/x86/sse2.h:1899:36: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1899 | simde_mm_cvttpd_pi32 (simde__m128d a) {
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/sse2.h: In function 'simde__m128i simde_mm_cvttps_epi32(simde__m128)':
../debian/include/simde/x86/sse2.h:1920:36: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
1920 | simde_mm_cvttps_epi32 (simde__m128 a) {
| ~~~~~~~~~~~~^
g++ -DLAST_INT_TYPE=size_t -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o split/last-split.o8 split/last-split.cc
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -I. -c -o LastdbArguments.o LastdbArguments.cc
In file included from ../debian/include/simde/x86/../simde-common.h:27,
from ../debian/include/simde/x86/mmx.h:28,
from ../debian/include/simde/x86/sse.h:32,
from ../debian/include/simde/x86/sse2.h:34,
from ../debian/include/simde/x86/sse3.h:28,
from ../debian/include/simde/x86/ssse3.h:28,
from ../debian/include/simde/x86/sse4.1.h:28,
from ../debian/include/simde/x86/avx2.h:26,
from mcf_simd.hh:7,
from GappedXdropAligner.hh:50,
from Centroid.hh:6,
from lastal.cc:15:
../debian/include/simde/x86/avx.h: In function 'simde__m256d simde_mm256_load_pd(const double*)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'const double*' to 'const simde__m256d*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:2992:8: note: in expansion of macro 'SIMDE_CAST_ALIGN'
2992 | r = *SIMDE_CAST_ALIGN(32, simde__m256d const*, a);
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'simde__m256 simde_mm256_load_ps(const float*)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'const float*' to 'const simde__m256*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:3011:8: note: in expansion of macro 'SIMDE_CAST_ALIGN'
3011 | r = *SIMDE_CAST_ALIGN(32, simde__m256 const*, a);
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'void simde_mm256_store_ps(simde_float32*, simde__m256)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'simde_float32*' {aka 'float*'} to 'simde__m256*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:4214:4: note: in expansion of macro 'SIMDE_CAST_ALIGN'
4214 | *SIMDE_CAST_ALIGN(32, simde__m256*, mem_addr) = a;
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'void simde_mm256_store_pd(simde_float64*, simde__m256d)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'simde_float64*' {aka 'double*'} to 'simde__m256d*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:4229:4: note: in expansion of macro 'SIMDE_CAST_ALIGN'
4229 | *SIMDE_CAST_ALIGN(32, simde__m256d*, mem_addr) = a;
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'void simde_mm256_stream_ps(simde_float32*, simde__m256)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'simde_float32*' {aka 'float*'} to 'simde__m256*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:4328:4: note: in expansion of macro 'SIMDE_CAST_ALIGN'
4328 | *SIMDE_CAST_ALIGN(32, simde__m256*, mem_addr) = a;
| ^~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h: In function 'void simde_mm256_stream_pd(simde_float64*, simde__m256d)':
../debian/include/simde/x86/../hedley.h:721:69: warning: cast from 'simde_float64*' {aka 'double*'} to 'simde__m256d*' increases required alignment of target type [-Wcast-align]
721 | # define HEDLEY_REINTERPRET_CAST(T, expr) (reinterpret_cast<T>(expr))
| ^
../debian/include/simde/x86/../simde-common.h:68:45: note: in expansion of macro 'HEDLEY_REINTERPRET_CAST'
68 | # define SIMDE_CAST_ALIGN(alignment, T, v) HEDLEY_REINTERPRET_CAST(T, (v))
| ^~~~~~~~~~~~~~~~~~~~~~~
../debian/include/simde/x86/avx.h:4343:4: note: in expansion of macro 'SIMDE_CAST_ALIGN'
4343 | *SIMDE_CAST_ALIGN(32, simde__m256d*, mem_addr) = a;
| ^~~~~~~~~~~~~~~~
In file included from mcf_simd.hh:7,
from GappedXdropAligner.hh:50,
from Centroid.hh:6,
from lastal.cc:15:
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepi8_epi16(simde__m128i)':
../debian/include/simde/x86/avx2.h:339:41: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
339 | simde_mm256_cvtepi8_epi16 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepi8_epi32(simde__m128i)':
../debian/include/simde/x86/avx2.h:359:41: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
359 | simde_mm256_cvtepi8_epi32 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepi16_epi32(simde__m128i)':
../debian/include/simde/x86/avx2.h:397:42: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
397 | simde_mm256_cvtepi16_epi32 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepi16_epi64(simde__m128i)':
../debian/include/simde/x86/avx2.h:417:42: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
417 | simde_mm256_cvtepi16_epi64 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepi32_epi64(simde__m128i)':
../debian/include/simde/x86/avx2.h:437:42: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
437 | simde_mm256_cvtepi32_epi64 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepu8_epi16(simde__m128i)':
../debian/include/simde/x86/avx2.h:457:41: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
457 | simde_mm256_cvtepu8_epi16 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepu8_epi32(simde__m128i)':
../debian/include/simde/x86/avx2.h:477:41: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
477 | simde_mm256_cvtepu8_epi32 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepu16_epi32(simde__m128i)':
../debian/include/simde/x86/avx2.h:515:42: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
515 | simde_mm256_cvtepu16_epi32 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepu16_epi64(simde__m128i)':
../debian/include/simde/x86/avx2.h:535:42: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
535 | simde_mm256_cvtepu16_epi64 (simde__m128i a){
| ~~~~~~~~~~~~~^
../debian/include/simde/x86/avx2.h: In function 'simde__m256i simde_mm256_cvtepu32_epi64(simde__m128i)':
../debian/include/simde/x86/avx2.h:555:42: warning: parameter 'a' set but not used [-Wunused-but-set-parameter]
555 | simde_mm256_cvtepu32_epi64 (simde__m128i a){
| ~~~~~~~~~~~~~^
split/cbrc_split_aligner.cc: In member function 'void cbrc::SplitAligner::initSpliceSignals(unsigned int)':
split/cbrc_split_aligner.cc:729:14: warning: comparison of integer expressions of different signedness: 'const unsigned int' and 'int' [-Wsign-compare]
729 | if (a.rend > chromEnd - chromBeg)
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from split/cbrc_unsplit_alignment.hh:12,
from split/cbrc_split_aligner.hh:7,
from split/cbrc_split_aligner.cc:4:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from split/cbrc_unsplit_alignment.hh:12,
from split/cbrc_split_aligner.hh:7,
from split/cbrc_split_aligner.cc:4:
/usr/include/c++/9/bits/stl_vector.h: In member function 'std::vector<double> cbrc::SplitAligner::marginalProbs(unsigned int, unsigned int, unsigned int, unsigned int) const':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -Wl,-z,relro -Wl,-z,now -pthread -o lastal Alphabet.o CyclicSubsetSeed.o LambdaCalculator.o ScoreMatrix.o SubsetMinimizerFinder.o TantanMasker.o fileMap.o tantan.o LastalArguments.o GappedXdropAligner.o GappedXdropAlignerDna.o GappedXdropAlignerPssm.o GappedXdropAligner2qual.o GappedXdropAligner3frame.o mcf_gap_costs.o GeneticCode.o GreedyXdropAligner.o LastEvaluer.o OneQualityScoreMatrix.o QualityPssmMaker.o TwoQualityScoreMatrix.o gaplessXdrop.o gaplessPssmXdrop.o gaplessTwoQualityXdrop.o cbrc_linalg.o mcf_substitution_matrix_stats.o alp/sls_alignment_evaluer.o alp/sls_pvalues.o alp/sls_alp_sim.o alp/sls_alp_regression.o alp/sls_alp_data.o alp/sls_alp.o alp/sls_basic.o alp/njn_localmaxstatmatrix.o alp/njn_localmaxstat.o alp/njn_localmaxstatutil.o alp/njn_dynprogprob.o alp/njn_dynprogprobproto.o alp/njn_dynprogproblim.o alp/njn_ioutil.o alp/njn_random.o alp/sls_falp_alignment_evaluer.o alp/sls_fsa1_pvalues.o alp/sls_fsa1_utils.o alp/sls_fsa1.o alp/sls_fsa1_parameters.o Alignment.o AlignmentPot.o AlignmentWrite.o Centroid.o DiagonalTable.o MultiSequence.o MultiSequenceQual.o SegmentPair.o SegmentPairPot.o SubsetSuffixArray.o SubsetSuffixArraySearch.o lastal.o -lz
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -Wl,-z,relro -Wl,-z,now -pthread -o last-split Alphabet.o LambdaCalculator.o fileMap.o cbrc_linalg.o mcf_substitution_matrix_stats.o split/cbrc_unsplit_alignment.o split/last-split-main.o MultiSequence.o split/cbrc_split_aligner.o split/last-split.o
cc -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -pthread -o last-merge-batches last-merge-batches.o
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -Wl,-z,relro -Wl,-z,now -pthread -o last-pair-probs last-pair-probs.o last-pair-probs-main.o -lz
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -Wl,-z,relro -Wl,-z,now -pthread -o lastdb8 Alphabet.o CyclicSubsetSeed.o LambdaCalculator.o ScoreMatrix.o SubsetMinimizerFinder.o TantanMasker.o fileMap.o cbrc_linalg.o mcf_substitution_matrix_stats.o tantan.o LastdbArguments.o MultiSequence.o8 MultiSequenceQual.o8 SubsetSuffixArray.o8 SubsetSuffixArraySort.o8 lastdb.o8 -lz
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -Wl,-z,relro -Wl,-z,now -pthread -o lastdb Alphabet.o CyclicSubsetSeed.o LambdaCalculator.o ScoreMatrix.o SubsetMinimizerFinder.o TantanMasker.o fileMap.o cbrc_linalg.o mcf_substitution_matrix_stats.o tantan.o LastdbArguments.o MultiSequence.o MultiSequenceQual.o SubsetSuffixArray.o SubsetSuffixArraySort.o lastdb.o -lz
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -Wl,-z,relro -Wl,-z,now -pthread -o last-split8 Alphabet.o LambdaCalculator.o fileMap.o cbrc_linalg.o mcf_substitution_matrix_stats.o split/cbrc_unsplit_alignment.o split/last-split-main.o MultiSequence.o8 split/cbrc_split_aligner.o8 split/last-split.o8
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -Wl,-z,relro -Wl,-z,now -pthread -o lastal8 Alphabet.o CyclicSubsetSeed.o LambdaCalculator.o ScoreMatrix.o SubsetMinimizerFinder.o TantanMasker.o fileMap.o tantan.o LastalArguments.o GappedXdropAligner.o GappedXdropAlignerDna.o GappedXdropAlignerPssm.o GappedXdropAligner2qual.o GappedXdropAligner3frame.o mcf_gap_costs.o GeneticCode.o GreedyXdropAligner.o LastEvaluer.o OneQualityScoreMatrix.o QualityPssmMaker.o TwoQualityScoreMatrix.o gaplessXdrop.o gaplessPssmXdrop.o gaplessTwoQualityXdrop.o cbrc_linalg.o mcf_substitution_matrix_stats.o alp/sls_alignment_evaluer.o alp/sls_pvalues.o alp/sls_alp_sim.o alp/sls_alp_regression.o alp/sls_alp_data.o alp/sls_alp.o alp/sls_basic.o alp/njn_localmaxstatmatrix.o alp/njn_localmaxstat.o alp/njn_localmaxstatutil.o alp/njn_dynprogprob.o alp/njn_dynprogprobproto.o alp/njn_dynprogproblim.o alp/njn_ioutil.o alp/njn_random.o alp/sls_falp_alignment_evaluer.o alp/sls_fsa1_pvalues.o alp/sls_fsa1_utils.o alp/sls_fsa1.o alp/sls_fsa1_parameters.o Alignment.o8 AlignmentPot.o8 AlignmentWrite.o8 Centroid.o8 DiagonalTable.o8 MultiSequence.o8 MultiSequenceQual.o8 SegmentPair.o8 SegmentPairPot.o8 SubsetSuffixArray.o8 SubsetSuffixArraySearch.o8 lastal.o8 -lz
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_test -a
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch
dh_testroot -a
dh_prep -a
debian/rules override_dh_auto_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
/usr/bin/make -j4 install prefix=/<<PKGBUILDDIR>>/debian/last-align/usr
make[2]: Entering directory '/<<PKGBUILDDIR>>'
make[2]: warning: -j4 forced in submake: resetting jobserver mode.
make[3]: Entering directory '/<<PKGBUILDDIR>>/src'
if test -e ../.hg ; \
then echo \"`hg id -n`\" | cmp -s version.hh - || echo \"`hg id -n`\" > version.hh ; \
elif test -e ../.hg_archival.txt ; \
then echo \"`grep latesttagdistance ../.hg_archival.txt | cut -d' ' -f2`\" | cmp -s version.hh - || echo \"`grep latesttagdistance ../.hg_archival.txt | cut -d' ' -f2`\" > version.hh ; \
else test -e version.hh || echo \"UNKNOWN\" > version.hh ; \
fi
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src'
mkdir -p /<<PKGBUILDDIR>>/debian/last-align/usr/bin
cp scripts/* /<<PKGBUILDDIR>>/debian/last-align/usr/bin
cp src/lastdb src/lastal src/last-split src/last-merge-batches src/last-pair-probs src/lastdb8 src/lastal8 src/last-split8 /<<PKGBUILDDIR>>/debian/last-align/usr/bin
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
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dh_installdocs -a
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make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_installchangelogs ChangeLog.txt
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installexamples -a
debian/rules override_dh_installman
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_installman
help2man --no-info --version-string="1047" \
--name='make a dotplot, a.k.a. Oxford Grid, of alignments in LAST tabular format' \
/<<PKGBUILDDIR>>/scripts/last-dotplot > /<<PKGBUILDDIR>>/debian/last-align/usr/share/man/man1/last-dotplot.1
help2man --no-info --version-string="1047" \
--name="genome-scale comparison of biological sequences" \
--help-option="-h" \
/<<PKGBUILDDIR>>/debian/last-align/usr/bin/lastal > /<<PKGBUILDDIR>>/debian/last-align/usr/share/man/man1/lastal.1
help2man --no-info --version-string="1047" \
--name="genome-scale comparison of biological sequences" \
--help-option="-h" \
/<<PKGBUILDDIR>>/debian/last-align/usr/bin/lastal8 > /<<PKGBUILDDIR>>/debian/last-align/usr/share/man/man1/lastal8.1
#help2man --no-info --version-string="1047" \
# --name="genome-scale comparison of biological sequences" \
# --help-option="-h" \
# /<<PKGBUILDDIR>>/debian/last-align/usr/bin/lastdb > /<<PKGBUILDDIR>>/debian/last-align/usr/share/man/man1/lastdb.1
help2man --no-info --version-string="1047" \
--name="Sort MAF-format alignments by sequence name" \
/<<PKGBUILDDIR>>/scripts/maf-sort > /<<PKGBUILDDIR>>/debian/last-align/usr/share/man/man1/maf-sort.1
help2man --no-info --version-string="1047" \
--name="changes the order of the sequences in MAF-format alignments" \
/<<PKGBUILDDIR>>/scripts/maf-swap > /<<PKGBUILDDIR>>/debian/last-align/usr/share/man/man1/maf-swap.1
#help2man --no-info --version-string="1047" \
# --name="Add extra column with mapping probabilities" \
# /<<PKGBUILDDIR>>/scripts/last-map-probs > /<<PKGBUILDDIR>>/debian/last-align/usr/share/man/man1/last-map-probs.1
# This script has not enough to put in a manual page.
#help2man --no-info --version-string="1047" \
# --name="Read files of lastal output, merge corresponding batches, and write them." \
# /<<PKGBUILDDIR>>/scripts/last-merge-batches > /<<PKGBUILDDIR>>/debian/last-align/usr/share/man/man1/last-merge-batches.1
#help2man --no-info --version-string="1047" \
# --name="Clean up MAF-format alignments" \
# /<<PKGBUILDDIR>>/scripts/last-reduce-alignments > /<<PKGBUILDDIR>>/debian/last-align/usr/share/man/man1/last-reduce-alignments.1
#help2man --no-info --version-string="1047" \
# --name='Remove MAF-format alignments which are "dominated" by others' \
# /<<PKGBUILDDIR>>/scripts/last-remove-dominated > /<<PKGBUILDDIR>>/debian/last-align/usr/share/man/man1/last-remove-dominated.1
help2man --no-info --version-string="1047" \
--name='Estimates "split" or "spliced" alignments.' \
/<<PKGBUILDDIR>>/debian/last-align/usr/bin/last-split > /<<PKGBUILDDIR>>/debian/last-align/usr/share/man/man1/last-split.1
help2man --no-info --version-string="1047" \
--name='Estimates "split" or "spliced" alignments.' \
/<<PKGBUILDDIR>>/debian/last-align/usr/bin/last-split8 > /<<PKGBUILDDIR>>/debian/last-align/usr/share/man/man1/last-split8.1
help2man --no-info --version-string="1047" \
--name="Join two or more sets of MAF-format multiple alignments" \
/<<PKGBUILDDIR>>/scripts/maf-join > /<<PKGBUILDDIR>>/debian/last-align/usr/share/man/man1/maf-join.1
help2man --no-info --version-string="1047" \
--name="Convert MAF-format alignments to tabular format" \
/<<PKGBUILDDIR>>/scripts/maf-convert > /<<PKGBUILDDIR>>/debian/last-align/usr/share/man/man1/maf-convert.1
help2man --no-info --version-string="1047" \
--name="Read 2 fastq files, and write them interleaved" \
/<<PKGBUILDDIR>>/scripts/fastq-interleave > /<<PKGBUILDDIR>>/debian/last-align/usr/share/man/man1/fastq-interleave.1
help2man --no-info --version-string="1047" \
--name="Read files of lastal output, merge corresponding batches, and write them" \
/<<PKGBUILDDIR>>/debian/last-align/usr/bin/last-merge-batches > /<<PKGBUILDDIR>>/debian/last-align/usr/share/man/man1/last-merge-batches.1
#help2man --no-info --version-string="1047" \
# --name="Read alignments of paired DNA reads to a genome, and do estimations" \
# /<<PKGBUILDDIR>>/debian/last-align/usr/bin/last-pair-probs > /<<PKGBUILDDIR>>/debian/last-align/usr/share/man/man1/last-pair-probs.1
help2man --no-info --version-string="1047" \
--name="Get alignments that have a segment with score >= threshold, with gentle masking of lowercase letters" \
/<<PKGBUILDDIR>>/scripts/last-postmask > /<<PKGBUILDDIR>>/debian/last-align/usr/share/man/man1/last-postmask.1
help2man --no-info --version-string="1047" \
--name="Try to find suitable score parameters for aligning the given sequences" \
/<<PKGBUILDDIR>>/scripts/last-train > /<<PKGBUILDDIR>>/debian/last-align/usr/share/man/man1/last-train.1
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
dh_fixperms -a
dh_missing -a
dh_dwz -a
dh_strip -a
dh_makeshlibs -a
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dpkg-shlibdeps: warning: debian/last-align/usr/bin/lastal8 contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/last-align/usr/bin/last-pair-probs contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/last-align/usr/bin/lastdb8 contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/last-align/usr/bin/lastdb contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/last-align/usr/bin/last-split8 contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/last-align/usr/bin/lastal contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/last-align/usr/bin/last-split contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/last-align/usr/bin/lastal8 debian/last-align/usr/bin/last-pair-probs debian/last-align/usr/bin/lastdb8 debian/last-align/usr/bin/lastdb debian/last-align/usr/bin/last-split8 debian/last-align/usr/bin/lastal debian/last-align/usr/bin/last-merge-batches debian/last-align/usr/bin/last-split were not linked against ld-linux-armhf.so.3 (they use none of the library's symbols)
dh_installdeb -a
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'last-align' in '../last-align_1047-1_armhf.deb'.
dpkg-deb: building package 'last-align-dbgsym' in '../last-align-dbgsym_1047-1_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian 2019 test autobuilder <root@raspbian.org> >../last-align_1047-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2020-01-27T05:47:25Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
last-align_1047-1_armhf.changes:
--------------------------------
Format: 1.8
Date: Fri, 24 Jan 2020 16:21:19 +0100
Source: last-align
Binary: last-align last-align-dbgsym
Architecture: armhf
Version: 1047-1
Distribution: bullseye-staging
Urgency: medium
Maintainer: Raspbian 2019 test autobuilder <root@raspbian.org>
Changed-By: Michael R. Crusoe <michael.crusoe@gmail.com>
Description:
last-align - genome-scale comparison of biological sequences
Changes:
last-align (1047-1) unstable; urgency=medium
.
* Team upload.
* New upstream version
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| Buildinfo |
+------------------------------------------------------------------------------+
Format: 1.0
Source: last-align
Binary: last-align
Architecture: armhf
Version: 1047-1
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Build-Origin: Raspbian
Build-Architecture: armhf
Build-Date: Mon, 27 Jan 2020 05:47:23 +0000
Build-Path: /<<PKGBUILDDIR>>
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LANG="en_GB.UTF-8"
LC_ALL="POSIX"
SOURCE_DATE_EPOCH="1579879279"
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
last-align-dbgsym_1047-1_armhf.deb
----------------------------------
new Debian package, version 2.0.
size 8126508 bytes: control archive=952 bytes.
669 bytes, 12 lines control
938 bytes, 9 lines md5sums
Package: last-align-dbgsym
Source: last-align
Version: 1047-1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 10237
Depends: last-align (= 1047-1)
Section: debug
Priority: optional
Description: debug symbols for last-align
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lrwxrwxrwx root/root 0 2020-01-24 15:21 ./usr/share/doc/last-align-dbgsym -> last-align
last-align_1047-1_armhf.deb
---------------------------
new Debian package, version 2.0.
size 625632 bytes: control archive=3560 bytes.
1184 bytes, 24 lines control
7299 bytes, 103 lines md5sums
Package: last-align
Version: 1047-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 3252
Depends: libc6 (>= 2.29), libgcc1 (>= 1:3.5), libstdc++6 (>= 6), zlib1g (>= 1:1.1.4), parallel
Recommends: python3, python3-pil
Section: science
Priority: optional
Homepage: http://last.cbrc.jp/
Description: genome-scale comparison of biological sequences
LAST is software for comparing and aligning sequences, typically DNA or
protein sequences. LAST is similar to BLAST, but it copes better with very
large amounts of sequence data. Here are two things LAST is good at:
.
* Comparing large (e.g. mammalian) genomes.
* Mapping lots of sequence tags onto a genome.
.
The main technical innovation is that LAST finds initial matches based on
their multiplicity, instead of using a fixed size (e.g. BLAST uses 10-mers).
This allows one to map tags to genomes without repeat-masking, without becoming
overwhelmed by repetitive hits. To find these variable-sized matches, it uses
a suffix array (inspired by Vmatch). To achieve high sensitivity, it uses a
discontiguous suffix array, analogous to spaced seeds.
drwxr-xr-x root/root 0 2020-01-24 15:21 ./
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-rw-r--r-- root/root 2947 2015-12-16 10:25 ./usr/share/doc/last-align/FAQ.txt
-rw-r--r-- root/root 926 2018-12-26 07:28 ./usr/share/doc/last-align/Makefile
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-rw-r--r-- root/root 179 2019-12-23 03:11 ./usr/share/doc/last-align/README.test
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-rw-r--r-- root/root 5555 2020-01-24 15:21 ./usr/share/doc/last-align/changelog.Debian.gz
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drwxr-xr-x root/root 0 2020-01-24 15:21 ./usr/share/doc/last-align/examples/
-rw-r--r-- root/root 17124 2013-05-23 00:23 ./usr/share/doc/last-align/examples/chickenMito.fa
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+------------------------------------------------------------------------------+
| Post Build |
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+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
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| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build Type: any
Build-Space: 119840
Build-Time: 473
Distribution: bullseye-staging
Host Architecture: armhf
Install-Time: 393
Job: last-align_1047-1
Machine Architecture: armhf
Package: last-align
Package-Time: 925
Source-Version: 1047-1
Space: 119840
Status: successful
Version: 1047-1
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Finished at 2020-01-27T05:47:25Z
Build needed 00:15:25, 119840k disk space