lammps →
20200303+dfsg1-3 →
armhf → 2020-05-19 07:03:23
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-01
+==============================================================================+
| lammps 20200303+dfsg1-3 (armhf) Tue, 19 May 2020 06:00:20 +0000 |
+==============================================================================+
Package: lammps
Version: 20200303+dfsg1-3
Source Version: 20200303+dfsg1-3
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bullseye-staging-armhf-sbuild-1054a33b-fe2a-4533-8772-16ece5dcd7dd' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [11.7 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [12.8 MB]
Fetched 24.5 MB in 10s (2452 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'lammps' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/science-team/lammps.git
Please use:
git clone https://salsa.debian.org/science-team/lammps.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 89.7 MB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main lammps 20200303+dfsg1-3 (dsc) [2825 B]
Get:2 http://172.17.0.1/private bullseye-staging/main lammps 20200303+dfsg1-3 (tar) [89.6 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main lammps 20200303+dfsg1-3 (diff) [14.4 kB]
Fetched 89.7 MB in 21s (4325 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/lammps-qigv51/lammps-20200303+dfsg1' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/lammps-qigv51' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-rnaRFE/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-rnaRFE/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-rnaRFE/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-rnaRFE/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-rnaRFE/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-rnaRFE/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-rnaRFE/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-rnaRFE/apt_archive ./ Packages [432 B]
Fetched 2108 B in 0s (9433 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libpam-cap netbase
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 25 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-rnaRFE/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (63.2 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12233 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any all)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: cmake, debhelper-compat (= 12), dh-python, gfortran | fortran-compiler, libavcodec-dev, libeigen3-dev, libfftw3-dev, libhdf5-mpi-dev, libjpeg-dev, libkim-api-dev, libnetcdf-dev, libsymspg-dev, libvtk7-dev, libvtk7-qt-dev, mpi-default-bin, mpi-default-dev, ocl-icd-opencl-dev | opencl-dev, python3-all-dev, python3-sphinx, voro++-dev
Filtered Build-Depends: cmake, debhelper-compat (= 12), dh-python, gfortran, libavcodec-dev, libeigen3-dev, libfftw3-dev, libhdf5-mpi-dev, libjpeg-dev, libkim-api-dev, libnetcdf-dev, libsymspg-dev, libvtk7-dev, libvtk7-qt-dev, mpi-default-bin, mpi-default-dev, ocl-icd-opencl-dev, python3-all-dev, python3-sphinx, voro++-dev
dpkg-deb: building package 'sbuild-build-depends-lammps-dummy' in '/<<BUILDDIR>>/resolver-rnaRFE/apt_archive/sbuild-build-depends-lammps-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-lammps-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-rnaRFE/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-rnaRFE/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-rnaRFE/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-rnaRFE/apt_archive ./ Sources [632 B]
Get:5 copy:/<<BUILDDIR>>/resolver-rnaRFE/apt_archive ./ Packages [698 B]
Fetched 2663 B in 0s (12.0 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install lammps build dependencies (apt-based resolver)
------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libpam-cap netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils ca-certificates cmake
cmake-data cython3 debhelper default-libmysqlclient-dev dh-autoreconf
dh-python dh-strip-nondeterminism docutils-common dwz file fontconfig
fontconfig-config fonts-dejavu-core gcc-10-base gdal-data gettext
gettext-base gfortran gfortran-9 groff-base hdf5-helpers ibverbs-providers
icu-devtools intltool-debian iso-codes libaec-dev libaec0 libaom0
libarchive-zip-perl libarchive13 libarmadillo-dev libarmadillo9 libarpack2
libarpack2-dev libatomic1 libavahi-client3 libavahi-common-data
libavahi-common3 libavcodec-dev libavcodec58 libavformat-dev libavformat58
libavutil-dev libavutil56 libblas-dev libblas3 libbluray2 libboost-dev
libboost1.67-dev libbrotli1 libbsd0 libcairo2 libcbor0 libcc1-0
libcfitsio-dev libcfitsio8 libcharls-dev libcharls2 libchromaprint1
libclang1-8 libcodec2-0.9 libcroco3 libcups2 libcurl3-gnutls libcurl4
libcurl4-gnutls-dev libdap-dev libdap25 libdapclient6v5 libdapserver7v5
libdatrie1 libdbus-1-3 libdebhelper-perl libdouble-conversion3
libdrm-amdgpu1 libdrm-common libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2
libegl-dev libegl-mesa0 libegl1 libeigen3-dev libelf1 libepsilon-dev
libepsilon1 libevdev2 libevent-2.1-7 libevent-core-2.1-7 libevent-dev
libevent-extra-2.1-7 libevent-openssl-2.1-7 libevent-pthreads-2.1-7
libexpat1 libexpat1-dev libfftw3-bin libfftw3-dev libfftw3-double3
libfftw3-single3 libfido2-1 libfile-stripnondeterminism-perl
libfontconfig-dev libfontconfig1 libfontconfig1-dev libfreetype-dev
libfreetype6 libfreetype6-dev libfreexl-dev libfreexl1 libfribidi0
libfyba-dev libfyba0 libgbm1 libgcc-s1 libgcc1 libgdal-dev libgdal26
libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgeos-3.8.1 libgeos-c1v5
libgeos-dev libgeotiff-dev libgeotiff5 libgfortran-9-dev libgfortran5
libgif-dev libgif7 libgl-dev libgl1 libgl1-mesa-dev libgl1-mesa-dri
libgl2ps-dev libgl2ps1.4 libglapi-mesa libgles-dev libgles1 libgles2
libglew-dev libglew2.1 libglib2.0-0 libglu1-mesa libglu1-mesa-dev
libglvnd-dev libglvnd0 libglx-dev libglx-mesa0 libglx0 libgme0 libgmp-dev
libgmpxx4ldbl libgnutls-dane0 libgnutls-openssl27 libgnutls28-dev
libgnutlsxx28 libgomp1 libgraphite2-3 libgsm1 libgssapi-krb5-2
libgstreamer-plugins-base1.0-0 libgstreamer1.0-0 libgudev-1.0-0
libharfbuzz0b libhdf4-0-alt libhdf4-alt-dev libhdf5-103-1 libhdf5-cpp-103-1
libhdf5-dev libhdf5-fortran-102 libhdf5-hl-100 libhdf5-hl-cpp-100
libhdf5-hl-fortran-100 libhdf5-mpi-dev libhdf5-openmpi-103-1
libhdf5-openmpi-cpp-103-1 libhdf5-openmpi-dev libhdf5-openmpi-fortran-102
libhdf5-openmpi-hl-100 libhdf5-openmpi-hl-cpp-100
libhdf5-openmpi-hl-fortran-100 libhwloc-dev libhwloc-plugins libhwloc15
libhyphen0 libibverbs-dev libibverbs1 libice-dev libice6 libicu-dev libicu63
libidn2-dev libinput-bin libinput10 libjbig-dev libjbig0 libjpeg-dev
libjpeg62-turbo libjpeg62-turbo-dev libjs-jquery libjs-sphinxdoc
libjs-underscore libjson-c-dev libjson-c4 libjsoncpp-dev libjsoncpp1
libk5crypto3 libkeyutils1 libkim-api-dev libkim-api2 libkml-dev libkmlbase1
libkmlconvenience1 libkmldom1 libkmlengine1 libkmlregionator1 libkmlxsd1
libkrb5-3 libkrb5support0 liblapack-dev liblapack3 liblcms2-2 libllvm8
libllvm9 libltdl-dev libltdl7 liblzma-dev libmagic-mgc libmagic1
libmariadb-dev libmariadb-dev-compat libmariadb3 libminizip-dev libminizip1
libmp3lame0 libmpdec2 libmpg123-0 libmtdev1 libncurses6 libnetcdf-c++4
libnetcdf-cxx-legacy-dev libnetcdf-dev libnetcdf18 libnghttp2-14 libnl-3-200
libnl-3-dev libnl-route-3-200 libnl-route-3-dev libnspr4 libnss3 libnuma-dev
libnuma1 libodbc1 libogdi-dev libogdi4.1 libogg-dev libogg0 libopengl-dev
libopengl0 libopenjp2-7 libopenjp2-7-dev libopenmpi-dev libopenmpi3
libopenmpt0 libopus0 liborc-0.4-0 libp11-kit-dev libpango-1.0-0
libpangocairo-1.0-0 libpangoft2-1.0-0 libpciaccess0 libpcre16-3
libpcre2-16-0 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1
libpixman-1-0 libpmix2 libpng-dev libpng16-16 libpoppler-dev
libpoppler-private-dev libpoppler82 libpopt0 libpq-dev libpq5 libprocps8
libproj-dev libproj19 libpsl5 libpthread-stubs0-dev libpython3-all-dev
libpython3-dev libpython3-stdlib libpython3.8 libpython3.8-dev
libpython3.8-minimal libpython3.8-stdlib libqhull-dev libqhull-r7deb1
libqhull7deb1 libqhullcpp7deb1 libqt5concurrent5 libqt5core5a libqt5dbus5
libqt5designer5 libqt5designercomponents5 libqt5gui5 libqt5help5
libqt5network5 libqt5opengl5 libqt5opengl5-dev libqt5positioning5
libqt5printsupport5 libqt5qml5 libqt5quick5 libqt5quickparticles5
libqt5quickshapes5 libqt5quicktest5 libqt5quickwidgets5 libqt5sensors5
libqt5sql5 libqt5sql5-sqlite libqt5test5 libqt5webchannel5 libqt5webkit5
libqt5webkit5-dev libqt5widgets5 libqt5x11extras5 libqt5xml5 librdmacm1
librhash0 librsvg2-2 librtmp1 libsensors-config libsensors5 libshine3
libsigsegv2 libsm-dev libsm6 libsnappy1v5 libsodium23 libsoxr0
libspatialite-dev libspatialite7 libspeex1 libsqlite3-dev libssh-gcrypt-4
libssh2-1 libssl1.1 libstdc++6 libsub-override-perl libsuperlu-dev
libsuperlu5 libswresample-dev libswresample3 libswscale-dev libswscale5
libsymspg-dev libsymspg1 libsz2 libtasn1-6-dev libtcl8.6 libthai-data
libthai0 libtheora-dev libtheora0 libtiff-dev libtiff5 libtiffxx5 libtinfo5
libtk8.6 libtool libtwolame0 libubsan1 libuchardet0 libunbound8
liburiparser-dev liburiparser1 libuuid1 libuv1 libva-drm2 libva-x11-2 libva2
libvdpau1 libvorbis0a libvorbisenc2 libvorbisfile3 libvoro++1 libvpx6
libvtk7-dev libvtk7-java libvtk7-jni libvtk7-qt-dev libvtk7.1p libvtk7.1p-qt
libvulkan-dev libvulkan1 libwacom-common libwacom2 libwavpack1
libwayland-client0 libwayland-server0 libwebp-dev libwebp6 libwebpdemux2
libwebpmux3 libwoff1 libx11-6 libx11-data libx11-dev libx11-xcb1 libx264-155
libx265-179 libxau-dev libxau6 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0
libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-present0 libxcb-randr0
libxcb-render-util0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1
libxcb-util0 libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1
libxcb1 libxcb1-dev libxdamage1 libxdmcp-dev libxdmcp6 libxerces-c-dev
libxerces-c3.2 libxext-dev libxext6 libxfixes3 libxft-dev libxft2
libxkbcommon-x11-0 libxkbcommon0 libxml2 libxml2-dev libxnvctrl0
libxrender-dev libxrender1 libxshmfence1 libxslt1.1 libxss-dev libxss1
libxt-dev libxt6 libxvidcore4 libxxf86vm1 libz3-4 libzstd-dev libzvbi-common
libzvbi0 m4 man-db mariadb-common mime-support mpi-default-bin
mpi-default-dev mysql-common nettle-dev node-jquery ocl-icd-libopencl1
ocl-icd-opencl-dev odbcinst odbcinst1debian2 opencl-c-headers
opencl-clhpp-headers openmpi-bin openmpi-common openssh-client openssl
pkg-config po-debconf procps proj-data python-babel-localedata python3
python3-alabaster python3-all python3-all-dev python3-attr python3-autobahn
python3-automat python3-babel python3-cbor python3-certifi
python3-cffi-backend python3-chardet python3-constantly python3-cryptography
python3-dev python3-distutils python3-docutils python3-hamcrest
python3-hyperlink python3-idna python3-imagesize python3-incremental
python3-jinja2 python3-lib2to3 python3-lz4 python3-markupsafe
python3-minimal python3-mpi4py python3-nacl python3-openssl
python3-packaging python3-pkg-resources python3-pyasn1
python3-pyasn1-modules python3-pygments python3-pyparsing python3-pyqrcode
python3-requests python3-roman python3-service-identity python3-six
python3-snappy python3-sphinx python3-trie python3-twisted
python3-twisted-bin python3-txaio python3-tz python3-u-msgpack
python3-ubjson python3-urllib3 python3-vtk7 python3-wsaccel
python3-zope.interface python3.8 python3.8-dev python3.8-minimal qdoc-qt5
qhelpgenerator-qt5 qt5-assistant qt5-qmake qt5-qmake-bin
qt5-qmltooling-plugins qtattributionsscanner-qt5 qtbase5-dev
qtbase5-dev-tools qtchooser qtdeclarative5-dev qtdeclarative5-dev-tools
qttools5-dev qttools5-dev-tools qttools5-private-dev sensible-utils
sgml-base shared-mime-info sphinx-common tcl tcl-dev tcl-vtk7 tcl8.6
tcl8.6-dev tk tk-dev tk8.6 tk8.6-dev ucf unixodbc-dev uuid-dev voro++-dev
vtk7 x11-common x11proto-core-dev x11proto-dev x11proto-scrnsaver-dev
x11proto-xext-dev xkb-data xml-core xorg-sgml-doctools xtrans-dev zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation cmake-doc ninja-build cython-doc dh-make gettext-doc
libasprintf-dev libgettextpo-dev gfortran-doc gfortran-9-doc libcoarrays-dev
groff isoquery lrzip libitpp-dev liblapack-doc libbluray-bdj libboost-doc
libboost1.67-doc libboost-atomic1.67-dev libboost-chrono1.67-dev
libboost-container1.67-dev libboost-context1.67-dev
libboost-contract1.67-dev libboost-coroutine1.67-dev
libboost-date-time1.67-dev libboost-exception1.67-dev libboost-fiber1.67-dev
libboost-filesystem1.67-dev libboost-graph1.67-dev
libboost-graph-parallel1.67-dev libboost-iostreams1.67-dev
libboost-locale1.67-dev libboost-log1.67-dev libboost-math1.67-dev
libboost-mpi1.67-dev libboost-mpi-python1.67-dev libboost-numpy1.67-dev
libboost-program-options1.67-dev libboost-python1.67-dev
libboost-random1.67-dev libboost-regex1.67-dev
libboost-serialization1.67-dev libboost-signals1.67-dev
libboost-stacktrace1.67-dev libboost-system1.67-dev libboost-test1.67-dev
libboost-thread1.67-dev libboost-timer1.67-dev libboost-type-erasure1.67-dev
libboost-wave1.67-dev libboost1.67-tools-dev libmpfrc++-dev libntl-dev
cups-common libcurl4-doc libidn11-dev libkrb5-dev libldap2-dev librtmp-dev
libssh2-1-dev libeigen3-doc libfftw3-doc freetype2-doc libgdal-doc
libgeotiff-epsg geotiff-bin gdal-bin glew-utils gmp-doc libgmp10-doc
libmpfr-dev dns-root-data gnutls-bin gnutls-doc krb5-doc krb5-user
libvisual-0.4-plugins gstreamer1.0-tools libhdf4-doc hdf4-tools libhdf5-doc
libice-doc icu-doc liblcms2-utils libtool-doc liblzma-doc netcdf-bin
netcdf-doc libmyodbc odbc-postgresql tdsodbc unixodbc-bin ogdi-bin
openmpi-doc opus-tools pciutils postgresql-doc-12 proj-bin
qt5-image-formats-plugins qtwayland5 librsvg2-bin lm-sensors libsm-doc speex
sqlite3-doc libsuperlu-doc gcj-jdk vtk7-doc vtk7-examples
java-virtual-machine libx11-doc libxcb-doc libxerces-c-doc libxext-doc
libxt-doc m4-doc apparmor less www-browser opencl-icd
opencl-clhpp-headers-doc keychain libpam-ssh monkeysphere ssh-askpass
libmail-box-perl python3-doc python3-tk python3-venv python-attr-doc
python-cryptography-doc python3-cryptography-vectors docutils-doc
fonts-linuxlibertine | ttf-linux-libertine texlive-lang-french
texlive-latex-base texlive-latex-recommended python-jinja2-doc python3-numpy
python-nacl-doc python-openssl-doc python3-openssl-dbg python3-setuptools
python-pygments-doc ttf-bitstream-vera python-pyparsing-doc python3-socks
python-requests-doc dvipng fonts-freefont-otf imagemagick-6.q16 latexmk
libjs-mathjax python3-sphinx-rtd-theme python3-stemmer sphinx-doc
texlive-fonts-recommended texlive-latex-extra texlive-plain-generic
python-trie-doc python3-pampy python3-qt4 python3-serial python3-wxgtk2.8
python3-twisted-bin-dbg python-txaio-doc mayavi2 python3.8-venv
python3.8-doc binfmt-support qt5-doc firebird-dev sgml-base-doc tcl-doc
tcl-tclreadline tcl8.6-doc tk-doc tk8.6-doc
Recommended packages:
curl | wget | lynx libaacs0 libcfitsio-doc dbus libarchive-cpio-perl
proj-bin libgdk-pixbuf2.0-bin libglib2.0-data xdg-user-dirs
gstreamer1.0-plugins-base javascript-common krb5-locales libgpm2
libcoarrays-openmpi-dev libpng-tools poppler-data publicsuffix
qttranslations5-l10n libqt5svg5 qt5-gtk-platformtheme geoclue-2.0
librsvg2-common libtasn1-doc uuid-runtime va-driver-all | va-driver
vdpau-driver-all | vdpau-driver mesa-vulkan-drivers | vulkan-icd
libwacom-bin xauth libmail-sendmail-perl psmisc libpaper-utils python3-pil
python3-click python3-png xterm | x-terminal-emulator
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils ca-certificates cmake
cmake-data cython3 debhelper default-libmysqlclient-dev dh-autoreconf
dh-python dh-strip-nondeterminism docutils-common dwz file fontconfig
fontconfig-config fonts-dejavu-core gdal-data gettext gettext-base gfortran
gfortran-9 groff-base hdf5-helpers ibverbs-providers icu-devtools
intltool-debian iso-codes libaec-dev libaec0 libaom0 libarchive-zip-perl
libarchive13 libarmadillo-dev libarmadillo9 libarpack2 libarpack2-dev
libavahi-client3 libavahi-common-data libavahi-common3 libavcodec-dev
libavcodec58 libavformat-dev libavformat58 libavutil-dev libavutil56
libblas-dev libblas3 libbluray2 libboost-dev libboost1.67-dev libbrotli1
libbsd0 libcairo2 libcbor0 libcfitsio-dev libcfitsio8 libcharls-dev
libcharls2 libchromaprint1 libclang1-8 libcodec2-0.9 libcroco3 libcups2
libcurl3-gnutls libcurl4 libcurl4-gnutls-dev libdap-dev libdap25
libdapclient6v5 libdapserver7v5 libdatrie1 libdbus-1-3 libdebhelper-perl
libdouble-conversion3 libdrm-amdgpu1 libdrm-common libdrm-nouveau2
libdrm-radeon1 libdrm2 libedit2 libegl-dev libegl-mesa0 libegl1
libeigen3-dev libelf1 libepsilon-dev libepsilon1 libevdev2 libevent-2.1-7
libevent-core-2.1-7 libevent-dev libevent-extra-2.1-7 libevent-openssl-2.1-7
libevent-pthreads-2.1-7 libexpat1 libexpat1-dev libfftw3-bin libfftw3-dev
libfftw3-double3 libfftw3-single3 libfido2-1
libfile-stripnondeterminism-perl libfontconfig-dev libfontconfig1
libfontconfig1-dev libfreetype-dev libfreetype6 libfreetype6-dev
libfreexl-dev libfreexl1 libfribidi0 libfyba-dev libfyba0 libgbm1
libgdal-dev libgdal26 libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common
libgeos-3.8.1 libgeos-c1v5 libgeos-dev libgeotiff-dev libgeotiff5
libgfortran-9-dev libgfortran5 libgif-dev libgif7 libgl-dev libgl1
libgl1-mesa-dev libgl1-mesa-dri libgl2ps-dev libgl2ps1.4 libglapi-mesa
libgles-dev libgles1 libgles2 libglew-dev libglew2.1 libglib2.0-0
libglu1-mesa libglu1-mesa-dev libglvnd-dev libglvnd0 libglx-dev libglx-mesa0
libglx0 libgme0 libgmp-dev libgmpxx4ldbl libgnutls-dane0 libgnutls-openssl27
libgnutls28-dev libgnutlsxx28 libgraphite2-3 libgsm1 libgssapi-krb5-2
libgstreamer-plugins-base1.0-0 libgstreamer1.0-0 libgudev-1.0-0
libharfbuzz0b libhdf4-0-alt libhdf4-alt-dev libhdf5-103-1 libhdf5-cpp-103-1
libhdf5-dev libhdf5-fortran-102 libhdf5-hl-100 libhdf5-hl-cpp-100
libhdf5-hl-fortran-100 libhdf5-mpi-dev libhdf5-openmpi-103-1
libhdf5-openmpi-cpp-103-1 libhdf5-openmpi-dev libhdf5-openmpi-fortran-102
libhdf5-openmpi-hl-100 libhdf5-openmpi-hl-cpp-100
libhdf5-openmpi-hl-fortran-100 libhwloc-dev libhwloc-plugins libhwloc15
libhyphen0 libibverbs-dev libibverbs1 libice-dev libice6 libicu-dev libicu63
libidn2-dev libinput-bin libinput10 libjbig-dev libjbig0 libjpeg-dev
libjpeg62-turbo libjpeg62-turbo-dev libjs-jquery libjs-sphinxdoc
libjs-underscore libjson-c-dev libjson-c4 libjsoncpp-dev libjsoncpp1
libk5crypto3 libkeyutils1 libkim-api-dev libkim-api2 libkml-dev libkmlbase1
libkmlconvenience1 libkmldom1 libkmlengine1 libkmlregionator1 libkmlxsd1
libkrb5-3 libkrb5support0 liblapack-dev liblapack3 liblcms2-2 libllvm8
libllvm9 libltdl-dev libltdl7 liblzma-dev libmagic-mgc libmagic1
libmariadb-dev libmariadb-dev-compat libmariadb3 libminizip-dev libminizip1
libmp3lame0 libmpdec2 libmpg123-0 libmtdev1 libncurses6 libnetcdf-c++4
libnetcdf-cxx-legacy-dev libnetcdf-dev libnetcdf18 libnghttp2-14 libnl-3-200
libnl-3-dev libnl-route-3-200 libnl-route-3-dev libnspr4 libnss3 libnuma-dev
libnuma1 libodbc1 libogdi-dev libogdi4.1 libogg-dev libogg0 libopengl-dev
libopengl0 libopenjp2-7 libopenjp2-7-dev libopenmpi-dev libopenmpi3
libopenmpt0 libopus0 liborc-0.4-0 libp11-kit-dev libpango-1.0-0
libpangocairo-1.0-0 libpangoft2-1.0-0 libpciaccess0 libpcre16-3
libpcre2-16-0 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1
libpixman-1-0 libpmix2 libpng-dev libpng16-16 libpoppler-dev
libpoppler-private-dev libpoppler82 libpopt0 libpq-dev libpq5 libprocps8
libproj-dev libproj19 libpsl5 libpthread-stubs0-dev libpython3-all-dev
libpython3-dev libpython3-stdlib libpython3.8 libpython3.8-dev
libpython3.8-minimal libpython3.8-stdlib libqhull-dev libqhull-r7deb1
libqhull7deb1 libqhullcpp7deb1 libqt5concurrent5 libqt5core5a libqt5dbus5
libqt5designer5 libqt5designercomponents5 libqt5gui5 libqt5help5
libqt5network5 libqt5opengl5 libqt5opengl5-dev libqt5positioning5
libqt5printsupport5 libqt5qml5 libqt5quick5 libqt5quickparticles5
libqt5quickshapes5 libqt5quicktest5 libqt5quickwidgets5 libqt5sensors5
libqt5sql5 libqt5sql5-sqlite libqt5test5 libqt5webchannel5 libqt5webkit5
libqt5webkit5-dev libqt5widgets5 libqt5x11extras5 libqt5xml5 librdmacm1
librhash0 librsvg2-2 librtmp1 libsensors-config libsensors5 libshine3
libsigsegv2 libsm-dev libsm6 libsnappy1v5 libsodium23 libsoxr0
libspatialite-dev libspatialite7 libspeex1 libsqlite3-dev libssh-gcrypt-4
libssh2-1 libssl1.1 libsub-override-perl libsuperlu-dev libsuperlu5
libswresample-dev libswresample3 libswscale-dev libswscale5 libsymspg-dev
libsymspg1 libsz2 libtasn1-6-dev libtcl8.6 libthai-data libthai0
libtheora-dev libtheora0 libtiff-dev libtiff5 libtiffxx5 libtinfo5 libtk8.6
libtool libtwolame0 libuchardet0 libunbound8 liburiparser-dev liburiparser1
libuv1 libva-drm2 libva-x11-2 libva2 libvdpau1 libvorbis0a libvorbisenc2
libvorbisfile3 libvoro++1 libvpx6 libvtk7-dev libvtk7-java libvtk7-jni
libvtk7-qt-dev libvtk7.1p libvtk7.1p-qt libvulkan-dev libvulkan1
libwacom-common libwacom2 libwavpack1 libwayland-client0 libwayland-server0
libwebp-dev libwebp6 libwebpdemux2 libwebpmux3 libwoff1 libx11-6 libx11-data
libx11-dev libx11-xcb1 libx264-155 libx265-179 libxau-dev libxau6
libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 libxcb-image0
libxcb-keysyms1 libxcb-present0 libxcb-randr0 libxcb-render-util0
libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-util0
libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxcb1
libxcb1-dev libxdamage1 libxdmcp-dev libxdmcp6 libxerces-c-dev
libxerces-c3.2 libxext-dev libxext6 libxfixes3 libxft-dev libxft2
libxkbcommon-x11-0 libxkbcommon0 libxml2 libxml2-dev libxnvctrl0
libxrender-dev libxrender1 libxshmfence1 libxslt1.1 libxss-dev libxss1
libxt-dev libxt6 libxvidcore4 libxxf86vm1 libz3-4 libzstd-dev libzvbi-common
libzvbi0 m4 man-db mariadb-common mime-support mpi-default-bin
mpi-default-dev mysql-common nettle-dev node-jquery ocl-icd-libopencl1
ocl-icd-opencl-dev odbcinst odbcinst1debian2 opencl-c-headers
opencl-clhpp-headers openmpi-bin openmpi-common openssh-client openssl
pkg-config po-debconf procps proj-data python-babel-localedata python3
python3-alabaster python3-all python3-all-dev python3-attr python3-autobahn
python3-automat python3-babel python3-cbor python3-certifi
python3-cffi-backend python3-chardet python3-constantly python3-cryptography
python3-dev python3-distutils python3-docutils python3-hamcrest
python3-hyperlink python3-idna python3-imagesize python3-incremental
python3-jinja2 python3-lib2to3 python3-lz4 python3-markupsafe
python3-minimal python3-mpi4py python3-nacl python3-openssl
python3-packaging python3-pkg-resources python3-pyasn1
python3-pyasn1-modules python3-pygments python3-pyparsing python3-pyqrcode
python3-requests python3-roman python3-service-identity python3-six
python3-snappy python3-sphinx python3-trie python3-twisted
python3-twisted-bin python3-txaio python3-tz python3-u-msgpack
python3-ubjson python3-urllib3 python3-vtk7 python3-wsaccel
python3-zope.interface python3.8 python3.8-dev python3.8-minimal qdoc-qt5
qhelpgenerator-qt5 qt5-assistant qt5-qmake qt5-qmake-bin
qt5-qmltooling-plugins qtattributionsscanner-qt5 qtbase5-dev
qtbase5-dev-tools qtchooser qtdeclarative5-dev qtdeclarative5-dev-tools
qttools5-dev qttools5-dev-tools qttools5-private-dev
sbuild-build-depends-lammps-dummy sensible-utils sgml-base shared-mime-info
sphinx-common tcl tcl-dev tcl-vtk7 tcl8.6 tcl8.6-dev tk tk-dev tk8.6
tk8.6-dev ucf unixodbc-dev uuid-dev voro++-dev vtk7 x11-common
x11proto-core-dev x11proto-dev x11proto-scrnsaver-dev x11proto-xext-dev
xkb-data xml-core xorg-sgml-doctools xtrans-dev zlib1g-dev
The following packages will be upgraded:
gcc-10-base libatomic1 libcc1-0 libgcc-s1 libgcc1 libgomp1 libstdc++6
libubsan1 libuuid1
9 upgraded, 589 newly installed, 0 to remove and 16 not upgraded.
Need to get 323 MB of archives.
After this operation, 1893 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-rnaRFE/apt_archive ./ sbuild-build-depends-lammps-dummy 0.invalid.0 [984 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf libbsd0 armhf 0.10.0-1 [112 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf libtinfo5 armhf 6.2-1 [318 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf libatomic1 armhf 10.1.0-1+rpi1 [8180 B]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf libubsan1 armhf 10.1.0-1+rpi1 [115 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf libgomp1 armhf 10.1.0-1+rpi1 [83.2 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf gcc-10-base armhf 10.1.0-1+rpi1 [196 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf libgcc-s1 armhf 10.1.0-1+rpi1 [36.1 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf libgcc1 armhf 1:10.1.0-1+rpi1 [36.0 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf libcc1-0 armhf 10.1.0-1+rpi1 [31.7 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf libstdc++6 armhf 10.1.0-1+rpi1 [408 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-5 [783 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.2-2 [29.6 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.1-1 [1262 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf libglvnd0 armhf 1.3.1-1 [55.2 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf libdrm-common all 2.4.101-2+rpi1 [14.6 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf libdrm2 armhf 2.4.101-2+rpi1 [37.6 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf libexpat1 armhf 2.2.9-1 [71.5 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf libwayland-server0 armhf 1.18.0-1 [27.8 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf libgbm1 armhf 19.3.3-1 [67.1 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf libglapi-mesa armhf 19.3.3-1 [79.0 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf libwayland-client0 armhf 1.18.0-1 [21.7 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf libx11-xcb1 armhf 2:1.6.9-2 [190 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf libxau6 armhf 1:1.0.8-1+b2 [19.1 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf libxcb1 armhf 1.14-2 [135 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf libxcb-dri2-0 armhf 1.14-2 [103 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf libxcb-dri3-0 armhf 1.14-2 [102 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf libxcb-present0 armhf 1.14-2 [101 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf libxcb-sync1 armhf 1.14-2 [104 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf libxcb-xfixes0 armhf 1.14-2 [105 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf libxshmfence1 armhf 1.3-1 [8636 B]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf libegl-mesa0 armhf 19.3.3-1 [120 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf libegl1 armhf 1.3.1-1 [28.7 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf libgles2 armhf 1.3.1-1 [20.0 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.64.2-1 [1158 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf libgstreamer1.0-0 armhf 1.16.2-2 [2077 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf liborc-0.4-0 armhf 1:0.4.31-1 [150 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf iso-codes all 4.4-1 [2749 kB]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf libgstreamer-plugins-base1.0-0 armhf 1.16.2-4 [2004 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf libhyphen0 armhf 2.8.8-7 [30.0 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf libicu63 armhf 63.2-3 [7987 kB]
Get:45 http://172.17.0.1/private bullseye-staging/main armhf libjpeg62-turbo armhf 1:1.5.2-2+b1 [110 kB]
Get:46 http://172.17.0.1/private bullseye-staging/main armhf libpng16-16 armhf 1.6.37-2 [274 kB]
Get:47 http://172.17.0.1/private bullseye-staging/main armhf libdouble-conversion3 armhf 3.1.5-5 [38.9 kB]
Get:48 http://172.17.0.1/private bullseye-staging/main armhf libpcre2-16-0 armhf 10.34-7 [190 kB]
Get:49 http://172.17.0.1/private bullseye-staging/main armhf libqt5core5a armhf 5.12.5+dfsg-10+rpi1 [1741 kB]
Get:50 http://172.17.0.1/private bullseye-staging/main armhf libfreetype6 armhf 2.10.1-2 [330 kB]
Get:51 http://172.17.0.1/private bullseye-staging/main armhf libuuid1 armhf 2.35.1-5 [80.0 kB]
Get:52 http://172.17.0.1/private bullseye-staging/main armhf sensible-utils all 0.0.12+nmu1 [16.0 kB]
Get:53 http://172.17.0.1/private bullseye-staging/main armhf ucf all 3.0038+nmu1 [69.0 kB]
Get:54 http://172.17.0.1/private bullseye-staging/main armhf fonts-dejavu-core all 2.37-1 [1068 kB]
Get:55 http://172.17.0.1/private bullseye-staging/main armhf fontconfig-config all 2.13.1-4.2 [281 kB]
Get:56 http://172.17.0.1/private bullseye-staging/main armhf libfontconfig1 armhf 2.13.1-4.2 [328 kB]
Get:57 http://172.17.0.1/private bullseye-staging/main armhf fontconfig armhf 2.13.1-4.2 [416 kB]
Get:58 http://172.17.0.1/private bullseye-staging/main armhf libgraphite2-3 armhf 1.3.14-1 [70.3 kB]
Get:59 http://172.17.0.1/private bullseye-staging/main armhf libharfbuzz0b armhf 2.6.4-1+rpi1 [1308 kB]
Get:60 http://172.17.0.1/private bullseye-staging/main armhf x11-common all 1:7.7+20 [252 kB]
Get:61 http://172.17.0.1/private bullseye-staging/main armhf libice6 armhf 2:1.0.9-2 [51.6 kB]
Get:62 http://172.17.0.1/private bullseye-staging/main armhf libevdev2 armhf 1.9.0+dfsg-1+rpi1 [27.2 kB]
Get:63 http://172.17.0.1/private bullseye-staging/main armhf libmtdev1 armhf 1.1.5-1.1 [21.3 kB]
Get:64 http://172.17.0.1/private bullseye-staging/main armhf libgudev-1.0-0 armhf 233-1 [11.9 kB]
Get:65 http://172.17.0.1/private bullseye-staging/main armhf libwacom-common all 1.3-2 [45.0 kB]
Get:66 http://172.17.0.1/private bullseye-staging/main armhf libwacom2 armhf 1.3-2 [17.9 kB]
Get:67 http://172.17.0.1/private bullseye-staging/main armhf libinput-bin armhf 1.15.5-1 [21.1 kB]
Get:68 http://172.17.0.1/private bullseye-staging/main armhf libinput10 armhf 1.15.5-1 [97.7 kB]
Get:69 http://172.17.0.1/private bullseye-staging/main armhf libdbus-1-3 armhf 1.12.16-2+b1 [189 kB]
Get:70 http://172.17.0.1/private bullseye-staging/main armhf libqt5dbus5 armhf 5.12.5+dfsg-10+rpi1 [210 kB]
Get:71 http://172.17.0.1/private bullseye-staging/main armhf libssl1.1 armhf 1.1.1g-1 [1272 kB]
Get:72 http://172.17.0.1/private bullseye-staging/main armhf libqt5network5 armhf 5.12.5+dfsg-10+rpi1 [595 kB]
Get:73 http://172.17.0.1/private bullseye-staging/main armhf libsm6 armhf 2:1.2.3-1 [32.9 kB]
Get:74 http://172.17.0.1/private bullseye-staging/main armhf libx11-data all 2:1.6.9-2 [298 kB]
Get:75 http://172.17.0.1/private bullseye-staging/main armhf libx11-6 armhf 2:1.6.9-2 [692 kB]
Get:76 http://172.17.0.1/private bullseye-staging/main armhf libxcb-icccm4 armhf 0.4.1-1.1 [26.3 kB]
Get:77 http://172.17.0.1/private bullseye-staging/main armhf libxcb-shm0 armhf 1.14-2 [101 kB]
Get:78 http://172.17.0.1/private bullseye-staging/main armhf libxcb-util0 armhf 0.3.8-3+b2 [21.9 kB]
Get:79 http://172.17.0.1/private bullseye-staging/main armhf libxcb-image0 armhf 0.4.0-1+b2 [23.3 kB]
Get:80 http://172.17.0.1/private bullseye-staging/main armhf libxcb-keysyms1 armhf 0.4.0-1+b2 [15.9 kB]
Get:81 http://172.17.0.1/private bullseye-staging/main armhf libxcb-randr0 armhf 1.14-2 [112 kB]
Get:82 http://172.17.0.1/private bullseye-staging/main armhf libxcb-render0 armhf 1.14-2 [110 kB]
Get:83 http://172.17.0.1/private bullseye-staging/main armhf libxcb-render-util0 armhf 0.3.9-1+b1 [17.3 kB]
Get:84 http://172.17.0.1/private bullseye-staging/main armhf libxcb-shape0 armhf 1.14-2 [102 kB]
Get:85 http://172.17.0.1/private bullseye-staging/main armhf libxcb-xinerama0 armhf 1.14-2 [101 kB]
Get:86 http://172.17.0.1/private bullseye-staging/main armhf libxcb-xinput0 armhf 1.14-2 [123 kB]
Get:87 http://172.17.0.1/private bullseye-staging/main armhf libxcb-xkb1 armhf 1.14-2 [122 kB]
Get:88 http://172.17.0.1/private bullseye-staging/main armhf xkb-data all 2.29-2 [655 kB]
Get:89 http://172.17.0.1/private bullseye-staging/main armhf libxkbcommon0 armhf 0.10.0-1 [111 kB]
Get:90 http://172.17.0.1/private bullseye-staging/main armhf libxkbcommon-x11-0 armhf 0.10.0-1 [38.2 kB]
Get:91 http://172.17.0.1/private bullseye-staging/main armhf libxrender1 armhf 1:0.9.10-1 [29.9 kB]
Get:92 http://172.17.0.1/private bullseye-staging/main armhf libqt5gui5 armhf 5.12.5+dfsg-10+rpi1 [2320 kB]
Get:93 http://172.17.0.1/private bullseye-staging/main armhf libqt5positioning5 armhf 5.12.5+dfsg-5 [170 kB]
Get:94 http://172.17.0.1/private bullseye-staging/main armhf libavahi-common-data armhf 0.8-1 [126 kB]
Get:95 http://172.17.0.1/private bullseye-staging/main armhf libavahi-common3 armhf 0.8-1 [54.3 kB]
Get:96 http://172.17.0.1/private bullseye-staging/main armhf libavahi-client3 armhf 0.8-1 [57.0 kB]
Get:97 http://172.17.0.1/private bullseye-staging/main armhf libkrb5support0 armhf 1.17-7+rpi1 [61.5 kB]
Get:98 http://172.17.0.1/private bullseye-staging/main armhf libk5crypto3 armhf 1.17-7+rpi1 [112 kB]
Get:99 http://172.17.0.1/private bullseye-staging/main armhf libkeyutils1 armhf 1.6.1-2 [14.5 kB]
Get:100 http://172.17.0.1/private bullseye-staging/main armhf libkrb5-3 armhf 1.17-7+rpi1 [318 kB]
Get:101 http://172.17.0.1/private bullseye-staging/main armhf libgssapi-krb5-2 armhf 1.17-7+rpi1 [135 kB]
Get:102 http://172.17.0.1/private bullseye-staging/main armhf libcups2 armhf 2.3.3-1 [308 kB]
Get:103 http://172.17.0.1/private bullseye-staging/main armhf libqt5widgets5 armhf 5.12.5+dfsg-10+rpi1 [2012 kB]
Get:104 http://172.17.0.1/private bullseye-staging/main armhf libqt5printsupport5 armhf 5.12.5+dfsg-10+rpi1 [205 kB]
Get:105 http://172.17.0.1/private bullseye-staging/main armhf libqt5qml5 armhf 5.12.5-5 [1206 kB]
Get:106 http://172.17.0.1/private bullseye-staging/main armhf libqt5quick5 armhf 5.12.5-5 [1119 kB]
Get:107 http://172.17.0.1/private bullseye-staging/main armhf libqt5sensors5 armhf 5.12.5-2 [96.3 kB]
Get:108 http://172.17.0.1/private bullseye-staging/main armhf libqt5webchannel5 armhf 5.12.5-2 [45.3 kB]
Get:109 http://172.17.0.1/private bullseye-staging/main armhf libwebp6 armhf 0.6.1-2 [228 kB]
Get:110 http://172.17.0.1/private bullseye-staging/main armhf libbrotli1 armhf 1.0.7-6.1 [255 kB]
Get:111 http://172.17.0.1/private bullseye-staging/main armhf libwoff1 armhf 1.0.2-1 [36.1 kB]
Get:112 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.10+dfsg-5 [592 kB]
Get:113 http://172.17.0.1/private bullseye-staging/main armhf libxslt1.1 armhf 1.1.34-4 [218 kB]
Get:114 http://172.17.0.1/private bullseye-staging/main armhf libqt5webkit5 armhf 5.212.0~alpha4-1+rpi1 [8695 kB]
Get:115 http://172.17.0.1/private bullseye-staging/main armhf libxcb-glx0 armhf 1.14-2 [117 kB]
Get:116 http://172.17.0.1/private bullseye-staging/main armhf libxdamage1 armhf 1:1.1.5-2 [15.2 kB]
Get:117 http://172.17.0.1/private bullseye-staging/main armhf libxext6 armhf 2:1.3.3-1+b2 [47.8 kB]
Get:118 http://172.17.0.1/private bullseye-staging/main armhf libxfixes3 armhf 1:5.0.3-2 [20.7 kB]
Get:119 http://172.17.0.1/private bullseye-staging/main armhf libxxf86vm1 armhf 1:1.1.4-1+b2 [20.1 kB]
Get:120 http://172.17.0.1/private bullseye-staging/main armhf libdrm-amdgpu1 armhf 2.4.101-2+rpi1 [27.1 kB]
Get:121 http://172.17.0.1/private bullseye-staging/main armhf libdrm-nouveau2 armhf 2.4.101-2+rpi1 [24.8 kB]
Get:122 http://172.17.0.1/private bullseye-staging/main armhf libdrm-radeon1 armhf 2.4.101-2+rpi1 [29.1 kB]
Get:123 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.176-1.1 [158 kB]
Get:124 http://172.17.0.1/private bullseye-staging/main armhf libedit2 armhf 3.1-20191231-1 [79.2 kB]
Get:125 http://172.17.0.1/private bullseye-staging/main armhf libz3-4 armhf 4.8.7-4 [5477 kB]
Get:126 http://172.17.0.1/private bullseye-staging/main armhf libllvm9 armhf 1:9.0.1-12+rpi1 [13.1 MB]
Get:127 http://172.17.0.1/private bullseye-staging/main armhf libsensors-config all 1:3.6.0-2 [32.0 kB]
Get:128 http://172.17.0.1/private bullseye-staging/main armhf libsensors5 armhf 1:3.6.0-2 [50.2 kB]
Get:129 http://172.17.0.1/private bullseye-staging/main armhf libgl1-mesa-dri armhf 19.3.3-1 [5676 kB]
Get:130 http://172.17.0.1/private bullseye-staging/main armhf libglx-mesa0 armhf 19.3.3-1 [169 kB]
Get:131 http://172.17.0.1/private bullseye-staging/main armhf libglx0 armhf 1.3.1-1 [25.7 kB]
Get:132 http://172.17.0.1/private bullseye-staging/main armhf libgl1 armhf 1.3.1-1 [105 kB]
Get:133 http://172.17.0.1/private bullseye-staging/main armhf xorg-sgml-doctools all 1:1.11-1 [21.9 kB]
Get:134 http://172.17.0.1/private bullseye-staging/main armhf x11proto-dev all 2020.1-1 [594 kB]
Get:135 http://172.17.0.1/private bullseye-staging/main armhf x11proto-core-dev all 2020.1-1 [3404 B]
Get:136 http://172.17.0.1/private bullseye-staging/main armhf libxau-dev armhf 1:1.0.8-1+b2 [22.4 kB]
Get:137 http://172.17.0.1/private bullseye-staging/main armhf libxdmcp-dev armhf 1:1.1.2-3 [40.9 kB]
Get:138 http://172.17.0.1/private bullseye-staging/main armhf xtrans-dev all 1.4.0-1 [98.7 kB]
Get:139 http://172.17.0.1/private bullseye-staging/main armhf libpthread-stubs0-dev armhf 0.4-1 [5344 B]
Get:140 http://172.17.0.1/private bullseye-staging/main armhf libxcb1-dev armhf 1.14-2 [173 kB]
Get:141 http://172.17.0.1/private bullseye-staging/main armhf libx11-dev armhf 2:1.6.9-2 [766 kB]
Get:142 http://172.17.0.1/private bullseye-staging/main armhf libglx-dev armhf 1.3.1-1 [16.2 kB]
Get:143 http://172.17.0.1/private bullseye-staging/main armhf libgl-dev armhf 1.3.1-1 [100 kB]
Get:144 http://172.17.0.1/private bullseye-staging/main armhf libegl-dev armhf 1.3.1-1 [19.2 kB]
Get:145 http://172.17.0.1/private bullseye-staging/main armhf libgles1 armhf 1.3.1-1 [13.1 kB]
Get:146 http://172.17.0.1/private bullseye-staging/main armhf libgles-dev armhf 1.3.1-1 [50.2 kB]
Get:147 http://172.17.0.1/private bullseye-staging/main armhf libqt5concurrent5 armhf 5.12.5+dfsg-10+rpi1 [63.2 kB]
Get:148 http://172.17.0.1/private bullseye-staging/main armhf libqt5sql5 armhf 5.12.5+dfsg-10+rpi1 [136 kB]
Get:149 http://172.17.0.1/private bullseye-staging/main armhf libqt5test5 armhf 5.12.5+dfsg-10+rpi1 [147 kB]
Get:150 http://172.17.0.1/private bullseye-staging/main armhf libqt5xml5 armhf 5.12.5+dfsg-10+rpi1 [123 kB]
Get:151 http://172.17.0.1/private bullseye-staging/main armhf libvulkan1 armhf 1.2.135.0-3 [81.4 kB]
Get:152 http://172.17.0.1/private bullseye-staging/main armhf libvulkan-dev armhf 1.2.135.0-3 [530 kB]
Get:153 http://172.17.0.1/private bullseye-staging/main armhf x11proto-xext-dev all 2020.1-1 [3404 B]
Get:154 http://172.17.0.1/private bullseye-staging/main armhf libxext-dev armhf 2:1.3.3-1+b2 [102 kB]
Get:155 http://172.17.0.1/private bullseye-staging/main armhf qt5-qmake-bin armhf 5.12.5+dfsg-10+rpi1 [806 kB]
Get:156 http://172.17.0.1/private bullseye-staging/main armhf qtchooser armhf 66-2 [23.1 kB]
Get:157 http://172.17.0.1/private bullseye-staging/main armhf qt5-qmake armhf 5.12.5+dfsg-10+rpi1 [229 kB]
Get:158 http://172.17.0.1/private bullseye-staging/main armhf qtbase5-dev-tools armhf 5.12.5+dfsg-10+rpi1 [622 kB]
Get:159 http://172.17.0.1/private bullseye-staging/main armhf qtbase5-dev armhf 5.12.5+dfsg-10+rpi1 [985 kB]
Get:160 http://172.17.0.1/private bullseye-staging/main armhf libqt5quickparticles5 armhf 5.12.5-5 [162 kB]
Get:161 http://172.17.0.1/private bullseye-staging/main armhf libqt5quickshapes5 armhf 5.12.5-5 [77.2 kB]
Get:162 http://172.17.0.1/private bullseye-staging/main armhf libqt5quicktest5 armhf 5.12.5-5 [72.1 kB]
Get:163 http://172.17.0.1/private bullseye-staging/main armhf libqt5quickwidgets5 armhf 5.12.5-5 [48.5 kB]
Get:164 http://172.17.0.1/private bullseye-staging/main armhf qt5-qmltooling-plugins armhf 5.12.5-5 [165 kB]
Get:165 http://172.17.0.1/private bullseye-staging/main armhf qtdeclarative5-dev-tools armhf 5.12.5-5 [371 kB]
Get:166 http://172.17.0.1/private bullseye-staging/main armhf qtdeclarative5-dev armhf 5.12.5-5 [342 kB]
Get:167 http://172.17.0.1/private bullseye-staging/main armhf libqt5webkit5-dev armhf 5.212.0~alpha4-1+rpi1 [61.3 kB]
Get:168 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8-minimal armhf 3.8.3-1 [751 kB]
Get:169 http://172.17.0.1/private bullseye-staging/main armhf python3.8-minimal armhf 3.8.3-1 [1629 kB]
Get:170 http://172.17.0.1/private bullseye-staging/main armhf python3-minimal armhf 3.8.2-3 [37.6 kB]
Get:171 http://172.17.0.1/private bullseye-staging/main armhf mime-support all 3.64 [37.8 kB]
Get:172 http://172.17.0.1/private bullseye-staging/main armhf libmpdec2 armhf 2.4.2-3 [68.1 kB]
Get:173 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8-stdlib armhf 3.8.3-1 [1600 kB]
Get:174 http://172.17.0.1/private bullseye-staging/main armhf python3.8 armhf 3.8.3-1 [416 kB]
Get:175 http://172.17.0.1/private bullseye-staging/main armhf libpython3-stdlib armhf 3.8.2-3 [20.8 kB]
Get:176 http://172.17.0.1/private bullseye-staging/main armhf python3 armhf 3.8.2-3 [63.7 kB]
Get:177 http://172.17.0.1/private bullseye-staging/main armhf sgml-base all 1.30 [15.1 kB]
Get:178 http://172.17.0.1/private bullseye-staging/main armhf libncurses6 armhf 6.2-1 [79.5 kB]
Get:179 http://172.17.0.1/private bullseye-staging/main armhf libprocps8 armhf 2:3.3.16-4 [59.8 kB]
Get:180 http://172.17.0.1/private bullseye-staging/main armhf procps armhf 2:3.3.16-4 [238 kB]
Get:181 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.38-5 [262 kB]
Get:182 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.38-5 [113 kB]
Get:183 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.38-5 [67.0 kB]
Get:184 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-10 [117 kB]
Get:185 http://172.17.0.1/private bullseye-staging/main armhf libcbor0 armhf 0.5.0+dfsg-2 [19.5 kB]
Get:186 http://172.17.0.1/private bullseye-staging/main armhf libfido2-1 armhf 1.4.0-1 [43.7 kB]
Get:187 http://172.17.0.1/private bullseye-staging/main armhf openssh-client armhf 1:8.2p1-4 [781 kB]
Get:188 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:189 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-4 [185 kB]
Get:190 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11.1 [341 kB]
Get:191 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:192 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.2-1 [775 kB]
Get:193 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-10 [435 kB]
Get:194 http://172.17.0.1/private bullseye-staging/main armhf openssl armhf 1.1.1g-1 [811 kB]
Get:195 http://172.17.0.1/private bullseye-staging/main armhf ca-certificates all 20190110 [157 kB]
Get:196 http://172.17.0.1/private bullseye-staging/main armhf cmake-data all 3.16.3-3+rpi1 [1628 kB]
Get:197 http://172.17.0.1/private bullseye-staging/main armhf libarchive13 armhf 3.4.2-1 [294 kB]
Get:198 http://172.17.0.1/private bullseye-staging/main armhf libnghttp2-14 armhf 1.40.0-1+b2 [74.2 kB]
Get:199 http://172.17.0.1/private bullseye-staging/main armhf libpsl5 armhf 0.21.0-1 [53.9 kB]
Get:200 http://172.17.0.1/private bullseye-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b1 [54.3 kB]
Get:201 http://172.17.0.1/private bullseye-staging/main armhf libssh2-1 armhf 1.8.0-2.1 [126 kB]
Get:202 http://172.17.0.1/private bullseye-staging/main armhf libcurl4 armhf 7.68.0-1 [286 kB]
Get:203 http://172.17.0.1/private bullseye-staging/main armhf libjsoncpp1 armhf 1.7.4-3.1 [65.8 kB]
Get:204 http://172.17.0.1/private bullseye-staging/main armhf librhash0 armhf 1.3.9-1 [133 kB]
Get:205 http://172.17.0.1/private bullseye-staging/main armhf libuv1 armhf 1.35.0-2 [115 kB]
Get:206 http://172.17.0.1/private bullseye-staging/main armhf cmake armhf 3.16.3-3+rpi1 [2653 kB]
Get:207 http://172.17.0.1/private bullseye-staging/main armhf cython3 armhf 0.29.14-1 [1398 kB]
Get:208 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-14 [513 kB]
Get:209 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:210 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 13 [184 kB]
Get:211 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:212 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:213 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.8.0-1 [24.2 kB]
Get:214 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.8.0-1 [14.8 kB]
Get:215 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13-5 [142 kB]
Get:216 http://172.17.0.1/private bullseye-staging/main armhf libcroco3 armhf 0.6.13-1 [133 kB]
Get:217 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-10 [1219 kB]
Get:218 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:219 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:220 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 13 [1002 kB]
Get:221 http://172.17.0.1/private bullseye-staging/main armhf mysql-common all 5.8+1.0.5 [7324 B]
Get:222 http://172.17.0.1/private bullseye-staging/main armhf mariadb-common all 1:10.3.22-1 [32.3 kB]
Get:223 http://172.17.0.1/private bullseye-staging/main armhf libmariadb3 armhf 1:10.3.22-1 [158 kB]
Get:224 http://172.17.0.1/private bullseye-staging/main armhf libevent-2.1-7 armhf 2.1.11-stable-1 [165 kB]
Get:225 http://172.17.0.1/private bullseye-staging/main armhf libunbound8 armhf 1.10.0-1 [427 kB]
Get:226 http://172.17.0.1/private bullseye-staging/main armhf libgnutls-dane0 armhf 3.6.13-2 [358 kB]
Get:227 http://172.17.0.1/private bullseye-staging/main armhf libgnutls-openssl27 armhf 3.6.13-2 [358 kB]
Get:228 http://172.17.0.1/private bullseye-staging/main armhf libgnutlsxx28 armhf 3.6.13-2 [11.9 kB]
Get:229 http://172.17.0.1/private bullseye-staging/main armhf libidn2-dev armhf 2.3.0-1 [84.6 kB]
Get:230 http://172.17.0.1/private bullseye-staging/main armhf libp11-kit-dev armhf 0.23.20-1 [205 kB]
Get:231 http://172.17.0.1/private bullseye-staging/main armhf libtasn1-6-dev armhf 4.16.0-2 [96.8 kB]
Get:232 http://172.17.0.1/private bullseye-staging/main armhf libgmpxx4ldbl armhf 2:6.2.0+dfsg-4 [22.0 kB]
Get:233 http://172.17.0.1/private bullseye-staging/main armhf libgmp-dev armhf 2:6.2.0+dfsg-4 [587 kB]
Get:234 http://172.17.0.1/private bullseye-staging/main armhf nettle-dev armhf 3.5.1+really3.5.1-2 [1116 kB]
Get:235 http://172.17.0.1/private bullseye-staging/main armhf libgnutls28-dev armhf 3.6.13-2 [1107 kB]
Get:236 http://172.17.0.1/private bullseye-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [184 kB]
Get:237 http://172.17.0.1/private bullseye-staging/main armhf libmariadb-dev armhf 1:10.3.22-1 [998 kB]
Get:238 http://172.17.0.1/private bullseye-staging/main armhf libmariadb-dev-compat armhf 1:10.3.22-1 [31.5 kB]
Get:239 http://172.17.0.1/private bullseye-staging/main armhf default-libmysqlclient-dev armhf 1.0.5+b5 [4044 B]
Get:240 http://172.17.0.1/private bullseye-staging/main armhf python3-lib2to3 all 3.8.2-2 [78.4 kB]
Get:241 http://172.17.0.1/private bullseye-staging/main armhf python3-distutils all 3.8.2-2 [145 kB]
Get:242 http://172.17.0.1/private bullseye-staging/main armhf dh-python all 4.20200315 [91.6 kB]
Get:243 http://172.17.0.1/private bullseye-staging/main armhf xml-core all 0.18+nmu1 [23.8 kB]
Get:244 http://172.17.0.1/private bullseye-staging/main armhf docutils-common all 0.16+dfsg-2 [129 kB]
Get:245 http://172.17.0.1/private bullseye-staging/main armhf gdal-data all 3.0.4+dfsg-1 [430 kB]
Get:246 http://172.17.0.1/private bullseye-staging/main armhf libgfortran5 armhf 10.1.0-1+rpi1 [232 kB]
Get:247 http://172.17.0.1/private bullseye-staging/main armhf libgfortran-9-dev armhf 9.3.0-11+rpi1 [278 kB]
Get:248 http://172.17.0.1/private bullseye-staging/main armhf gfortran-9 armhf 9.3.0-11+rpi1 [8107 kB]
Get:249 http://172.17.0.1/private bullseye-staging/main armhf gfortran armhf 4:9.2.1-3.1+rpi1 [1440 B]
Get:250 http://172.17.0.1/private bullseye-staging/main armhf hdf5-helpers armhf 1.10.6+repack-2 [40.0 kB]
Get:251 http://172.17.0.1/private bullseye-staging/main armhf libnl-3-200 armhf 3.4.0-1 [55.0 kB]
Get:252 http://172.17.0.1/private bullseye-staging/main armhf libnl-route-3-200 armhf 3.4.0-1 [132 kB]
Get:253 http://172.17.0.1/private bullseye-staging/main armhf libibverbs1 armhf 29.0-1 [47.5 kB]
Get:254 http://172.17.0.1/private bullseye-staging/main armhf ibverbs-providers armhf 29.0-1 [24.2 kB]
Get:255 http://172.17.0.1/private bullseye-staging/main armhf icu-devtools armhf 63.2-3 [163 kB]
Get:256 http://172.17.0.1/private bullseye-staging/main armhf libaec0 armhf 1.0.4-1 [20.0 kB]
Get:257 http://172.17.0.1/private bullseye-staging/main armhf libsz2 armhf 1.0.4-1 [6664 B]
Get:258 http://172.17.0.1/private bullseye-staging/main armhf libaec-dev armhf 1.0.4-1 [17.8 kB]
Get:259 http://172.17.0.1/private bullseye-staging/main armhf libaom0 armhf 1.0.0.errata1-3 [793 kB]
Get:260 http://172.17.0.1/private bullseye-staging/main armhf libblas3 armhf 3.9.0-2 [108 kB]
Get:261 http://172.17.0.1/private bullseye-staging/main armhf liblapack3 armhf 3.9.0-2 [1602 kB]
Get:262 http://172.17.0.1/private bullseye-staging/main armhf libarpack2 armhf 3.7.0-3 [85.7 kB]
Get:263 http://172.17.0.1/private bullseye-staging/main armhf libsuperlu5 armhf 5.2.1+dfsg1-4 [126 kB]
Get:264 http://172.17.0.1/private bullseye-staging/main armhf libarmadillo9 armhf 1:9.800.4+dfsg-1 [93.4 kB]
Get:265 http://172.17.0.1/private bullseye-staging/main armhf libblas-dev armhf 3.9.0-2 [113 kB]
Get:266 http://172.17.0.1/private bullseye-staging/main armhf liblapack-dev armhf 3.9.0-2 [2981 kB]
Get:267 http://172.17.0.1/private bullseye-staging/main armhf libarpack2-dev armhf 3.7.0-3 [96.2 kB]
Get:268 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-103-1 armhf 1.10.6+repack-2 [1184 kB]
Get:269 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-fortran-102 armhf 1.10.6+repack-2 [93.0 kB]
Get:270 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-hl-100 armhf 1.10.6+repack-2 [78.1 kB]
Get:271 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-hl-fortran-100 armhf 1.10.6+repack-2 [49.8 kB]
Get:272 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-cpp-103-1 armhf 1.10.6+repack-2 [128 kB]
Get:273 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-hl-cpp-100 armhf 1.10.6+repack-2 [36.9 kB]
Get:274 http://172.17.0.1/private bullseye-staging/main armhf libjpeg62-turbo-dev armhf 1:1.5.2-2+b1 [179 kB]
Get:275 http://172.17.0.1/private bullseye-staging/main armhf libjpeg-dev all 1:1.5.2-2 [57.5 kB]
Get:276 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-dev armhf 1.10.6+repack-2 [2167 kB]
Get:277 http://172.17.0.1/private bullseye-staging/main armhf libsuperlu-dev armhf 5.2.1+dfsg1-4 [18.4 kB]
Get:278 http://172.17.0.1/private bullseye-staging/main armhf libarmadillo-dev armhf 1:9.800.4+dfsg-1 [379 kB]
Get:279 http://172.17.0.1/private bullseye-staging/main armhf libva2 armhf 2.7.1-1 [56.9 kB]
Get:280 http://172.17.0.1/private bullseye-staging/main armhf libva-drm2 armhf 2.7.1-1 [17.4 kB]
Get:281 http://172.17.0.1/private bullseye-staging/main armhf libva-x11-2 armhf 2.7.1-1 [21.0 kB]
Get:282 http://172.17.0.1/private bullseye-staging/main armhf libvdpau1 armhf 1.4-1 [27.1 kB]
Get:283 http://172.17.0.1/private bullseye-staging/main armhf ocl-icd-libopencl1 armhf 2.2.12-4 [36.0 kB]
Get:284 http://172.17.0.1/private bullseye-staging/main armhf libavutil56 armhf 7:4.2.2-1+b1 [279 kB]
Get:285 http://172.17.0.1/private bullseye-staging/main armhf libpixman-1-0 armhf 0.36.0-1 [458 kB]
Get:286 http://172.17.0.1/private bullseye-staging/main armhf libcairo2 armhf 1.16.0-4 [599 kB]
Get:287 http://172.17.0.1/private bullseye-staging/main armhf libcodec2-0.9 armhf 0.9.2-2 [7862 kB]
Get:288 http://172.17.0.1/private bullseye-staging/main armhf libgsm1 armhf 1.0.18-2 [26.7 kB]
Get:289 http://172.17.0.1/private bullseye-staging/main armhf libmp3lame0 armhf 3.100-3 [347 kB]
Get:290 http://172.17.0.1/private bullseye-staging/main armhf libopenjp2-7 armhf 2.3.1-1 [140 kB]
Get:291 http://172.17.0.1/private bullseye-staging/main armhf libopus0 armhf 1.3-1 [169 kB]
Get:292 http://172.17.0.1/private bullseye-staging/main armhf libgdk-pixbuf2.0-common all 2.40.0+dfsg-4 [317 kB]
Get:293 http://172.17.0.1/private bullseye-staging/main armhf shared-mime-info armhf 1.15-1 [785 kB]
Get:294 http://172.17.0.1/private bullseye-staging/main armhf libjbig0 armhf 2.1-3.1+b2 [27.6 kB]
Get:295 http://172.17.0.1/private bullseye-staging/main armhf libtiff5 armhf 4.1.0+git191117-2 [250 kB]
Get:296 http://172.17.0.1/private bullseye-staging/main armhf libgdk-pixbuf2.0-0 armhf 2.40.0+dfsg-4 [158 kB]
Get:297 http://172.17.0.1/private bullseye-staging/main armhf libfribidi0 armhf 1.0.8-2 [63.5 kB]
Get:298 http://172.17.0.1/private bullseye-staging/main armhf libthai-data all 0.1.28-3 [170 kB]
Get:299 http://172.17.0.1/private bullseye-staging/main armhf libdatrie1 armhf 0.2.12-3+b1 [36.4 kB]
Get:300 http://172.17.0.1/private bullseye-staging/main armhf libthai0 armhf 0.1.28-3 [51.0 kB]
Get:301 http://172.17.0.1/private bullseye-staging/main armhf libpango-1.0-0 armhf 1.44.7-4 [165 kB]
Get:302 http://172.17.0.1/private bullseye-staging/main armhf libpangoft2-1.0-0 armhf 1.44.7-4 [52.6 kB]
Get:303 http://172.17.0.1/private bullseye-staging/main armhf libpangocairo-1.0-0 armhf 1.44.7-4 [44.9 kB]
Get:304 http://172.17.0.1/private bullseye-staging/main armhf librsvg2-2 armhf 2.48.3-1 [1212 kB]
Get:305 http://172.17.0.1/private bullseye-staging/main armhf libshine3 armhf 3.1.1-2+b1 [22.0 kB]
Get:306 http://172.17.0.1/private bullseye-staging/main armhf libsnappy1v5 armhf 1.1.8-1 [16.7 kB]
Get:307 http://172.17.0.1/private bullseye-staging/main armhf libspeex1 armhf 1.2~rc1.2-1.1 [51.7 kB]
Get:308 http://172.17.0.1/private bullseye-staging/main armhf libsoxr0 armhf 0.1.3-4+rpi1 [52.9 kB]
Get:309 http://172.17.0.1/private bullseye-staging/main armhf libswresample3 armhf 7:4.2.2-1+b1 [93.3 kB]
Get:310 http://172.17.0.1/private bullseye-staging/main armhf libogg0 armhf 1.3.2-1+b2 [16.2 kB]
Get:311 http://172.17.0.1/private bullseye-staging/main armhf libtheora0 armhf 1.1.1+dfsg.1-15 [148 kB]
Get:312 http://172.17.0.1/private bullseye-staging/main armhf libtwolame0 armhf 0.4.0-2 [46.8 kB]
Get:313 http://172.17.0.1/private bullseye-staging/main armhf libvorbis0a armhf 1.3.6-2 [82.4 kB]
Get:314 http://172.17.0.1/private bullseye-staging/main armhf libvorbisenc2 armhf 1.3.6-2 [74.0 kB]
Get:315 http://172.17.0.1/private bullseye-staging/main armhf libvpx6 armhf 1.8.2-1 [1136 kB]
Get:316 http://172.17.0.1/private bullseye-staging/main armhf libwavpack1 armhf 5.3.0-1 [75.2 kB]
Get:317 http://172.17.0.1/private bullseye-staging/main armhf libwebpmux3 armhf 0.6.1-2 [94.2 kB]
Get:318 http://172.17.0.1/private bullseye-staging/main armhf libx264-155 armhf 2:0.155.2917+git0a84d98-2+rpi1 [713 kB]
Get:319 http://172.17.0.1/private bullseye-staging/main armhf libx265-179 armhf 3.2.1-1 [539 kB]
Get:320 http://172.17.0.1/private bullseye-staging/main armhf libxvidcore4 armhf 2:1.3.7-1 [196 kB]
Get:321 http://172.17.0.1/private bullseye-staging/main armhf libzvbi-common all 0.2.35-18 [64.6 kB]
Get:322 http://172.17.0.1/private bullseye-staging/main armhf libzvbi0 armhf 0.2.35-18 [240 kB]
Get:323 http://172.17.0.1/private bullseye-staging/main armhf libavcodec58 armhf 7:4.2.2-1+b1 [4513 kB]
Get:324 http://172.17.0.1/private bullseye-staging/main armhf libavutil-dev armhf 7:4.2.2-1+b1 [407 kB]
Get:325 http://172.17.0.1/private bullseye-staging/main armhf libswresample-dev armhf 7:4.2.2-1+b1 [102 kB]
Get:326 http://172.17.0.1/private bullseye-staging/main armhf libavcodec-dev armhf 7:4.2.2-1+b1 [5052 kB]
Get:327 http://172.17.0.1/private bullseye-staging/main armhf libbluray2 armhf 1:1.2.0-1 [129 kB]
Get:328 http://172.17.0.1/private bullseye-staging/main armhf libchromaprint1 armhf 1.5.0-1 [35.0 kB]
Get:329 http://172.17.0.1/private bullseye-staging/main armhf libgme0 armhf 0.6.3-2 [110 kB]
Get:330 http://172.17.0.1/private bullseye-staging/main armhf libmpg123-0 armhf 1.25.13-1 [120 kB]
Get:331 http://172.17.0.1/private bullseye-staging/main armhf libvorbisfile3 armhf 1.3.6-2 [24.6 kB]
Get:332 http://172.17.0.1/private bullseye-staging/main armhf libopenmpt0 armhf 0.4.11-1 [533 kB]
Get:333 http://172.17.0.1/private bullseye-staging/main armhf libssh-gcrypt-4 armhf 0.9.4-1 [186 kB]
Get:334 http://172.17.0.1/private bullseye-staging/main armhf libavformat58 armhf 7:4.2.2-1+b1 [948 kB]
Get:335 http://172.17.0.1/private bullseye-staging/main armhf libavformat-dev armhf 7:4.2.2-1+b1 [1183 kB]
Get:336 http://172.17.0.1/private bullseye-staging/main armhf libboost1.67-dev armhf 1.67.0-17 [8389 kB]
Get:337 http://172.17.0.1/private bullseye-staging/main armhf libboost-dev armhf 1.67.0.2+b11 [4464 B]
Get:338 http://172.17.0.1/private bullseye-staging/main armhf libcurl3-gnutls armhf 7.68.0-1 [284 kB]
Get:339 http://172.17.0.1/private bullseye-staging/main armhf libcfitsio8 armhf 3.470-4 [490 kB]
Get:340 http://172.17.0.1/private bullseye-staging/main armhf libcfitsio-dev armhf 3.470-4 [555 kB]
Get:341 http://172.17.0.1/private bullseye-staging/main armhf libcharls2 armhf 2.0.0+dfsg-1 [52.0 kB]
Get:342 http://172.17.0.1/private bullseye-staging/main armhf libcharls-dev armhf 2.0.0+dfsg-1 [8016 B]
Get:343 http://172.17.0.1/private bullseye-staging/main armhf libllvm8 armhf 1:8.0.1-9+rpi1 [12.1 MB]
Get:344 http://172.17.0.1/private bullseye-staging/main armhf libclang1-8 armhf 1:8.0.1-9+rpi1 [5257 kB]
Get:345 http://172.17.0.1/private bullseye-staging/main armhf libcurl4-gnutls-dev armhf 7.68.0-1 [358 kB]
Get:346 http://172.17.0.1/private bullseye-staging/main armhf libdap25 armhf 3.20.5-1 [474 kB]
Get:347 http://172.17.0.1/private bullseye-staging/main armhf libdapserver7v5 armhf 3.20.5-1 [131 kB]
Get:348 http://172.17.0.1/private bullseye-staging/main armhf libdapclient6v5 armhf 3.20.5-1 [189 kB]
Get:349 http://172.17.0.1/private bullseye-staging/main armhf libicu-dev armhf 63.2-3 [8860 kB]
Get:350 http://172.17.0.1/private bullseye-staging/main armhf libxml2-dev armhf 2.9.10+dfsg-5 [660 kB]
Get:351 http://172.17.0.1/private bullseye-staging/main armhf uuid-dev armhf 2.35.1-5 [95.2 kB]
Get:352 http://172.17.0.1/private bullseye-staging/main armhf pkg-config armhf 0.29.2-1 [61.5 kB]
Get:353 http://172.17.0.1/private bullseye-staging/main armhf libdap-dev armhf 3.20.5-1 [778 kB]
Get:354 http://172.17.0.1/private bullseye-staging/main armhf libeigen3-dev all 3.3.7-2 [850 kB]
Get:355 http://172.17.0.1/private bullseye-staging/main armhf libpopt0 armhf 1.16-14 [46.8 kB]
Get:356 http://172.17.0.1/private bullseye-staging/main armhf libepsilon1 armhf 0.9.2+dfsg-4 [36.4 kB]
Get:357 http://172.17.0.1/private bullseye-staging/main armhf libepsilon-dev armhf 0.9.2+dfsg-4 [46.0 kB]
Get:358 http://172.17.0.1/private bullseye-staging/main armhf libevent-core-2.1-7 armhf 2.1.11-stable-1 [124 kB]
Get:359 http://172.17.0.1/private bullseye-staging/main armhf libevent-extra-2.1-7 armhf 2.1.11-stable-1 [98.7 kB]
Get:360 http://172.17.0.1/private bullseye-staging/main armhf libevent-pthreads-2.1-7 armhf 2.1.11-stable-1 [54.7 kB]
Get:361 http://172.17.0.1/private bullseye-staging/main armhf libevent-openssl-2.1-7 armhf 2.1.11-stable-1 [59.7 kB]
Get:362 http://172.17.0.1/private bullseye-staging/main armhf libevent-dev armhf 2.1.11-stable-1 [279 kB]
Get:363 http://172.17.0.1/private bullseye-staging/main armhf libexpat1-dev armhf 2.2.9-1 [119 kB]
Get:364 http://172.17.0.1/private bullseye-staging/main armhf libfftw3-double3 armhf 3.3.8-2 [429 kB]
Get:365 http://172.17.0.1/private bullseye-staging/main armhf libfftw3-single3 armhf 3.3.8-2 [633 kB]
Get:366 http://172.17.0.1/private bullseye-staging/main armhf libfftw3-bin armhf 3.3.8-2 [43.6 kB]
Get:367 http://172.17.0.1/private bullseye-staging/main armhf libfftw3-dev armhf 3.3.8-2 [1060 kB]
Get:368 http://172.17.0.1/private bullseye-staging/main armhf libpng-dev armhf 1.6.37-2 [276 kB]
Get:369 http://172.17.0.1/private bullseye-staging/main armhf libfreetype-dev armhf 2.10.1-2 [482 kB]
Get:370 http://172.17.0.1/private bullseye-staging/main armhf libfreetype6-dev armhf 2.10.1-2 [63.8 kB]
Get:371 http://172.17.0.1/private bullseye-staging/main armhf libfontconfig-dev armhf 2.13.1-4.2 [347 kB]
Get:372 http://172.17.0.1/private bullseye-staging/main armhf libfontconfig1-dev armhf 2.13.1-4.2 [238 kB]
Get:373 http://172.17.0.1/private bullseye-staging/main armhf libfreexl1 armhf 1.0.5-3 [31.8 kB]
Get:374 http://172.17.0.1/private bullseye-staging/main armhf libfreexl-dev armhf 1.0.5-3 [30.3 kB]
Get:375 http://172.17.0.1/private bullseye-staging/main armhf libfyba0 armhf 4.1.1-6 [97.8 kB]
Get:376 http://172.17.0.1/private bullseye-staging/main armhf libfyba-dev armhf 4.1.1-6 [161 kB]
Get:377 http://172.17.0.1/private bullseye-staging/main armhf libgeos-3.8.1 armhf 3.8.1-1 [724 kB]
Get:378 http://172.17.0.1/private bullseye-staging/main armhf libgeos-c1v5 armhf 3.8.1-1 [338 kB]
Get:379 http://172.17.0.1/private bullseye-staging/main armhf proj-data all 7.0.1-1 [7674 kB]
Get:380 http://172.17.0.1/private bullseye-staging/main armhf libproj19 armhf 7.0.1-1 [848 kB]
Get:381 http://172.17.0.1/private bullseye-staging/main armhf libgeotiff5 armhf 1.6.0-1 [62.7 kB]
Get:382 http://172.17.0.1/private bullseye-staging/main armhf libgif7 armhf 5.1.9-1 [42.5 kB]
Get:383 http://172.17.0.1/private bullseye-staging/main armhf libhdf4-0-alt armhf 4.2.15-1 [238 kB]
Get:384 http://172.17.0.1/private bullseye-staging/main armhf libjson-c4 armhf 0.13.1+dfsg-7 [33.3 kB]
Get:385 http://172.17.0.1/private bullseye-staging/main armhf libminizip1 armhf 1.1-8+b1 [18.3 kB]
Get:386 http://172.17.0.1/private bullseye-staging/main armhf liburiparser1 armhf 0.9.3-2 [39.2 kB]
Get:387 http://172.17.0.1/private bullseye-staging/main armhf libkmlbase1 armhf 1.3.0-8 [41.6 kB]
Get:388 http://172.17.0.1/private bullseye-staging/main armhf libkmldom1 armhf 1.3.0-8 [150 kB]
Get:389 http://172.17.0.1/private bullseye-staging/main armhf libkmlengine1 armhf 1.3.0-8 [66.1 kB]
Get:390 http://172.17.0.1/private bullseye-staging/main armhf libnetcdf18 armhf 1:4.7.4-1 [348 kB]
Get:391 http://172.17.0.1/private bullseye-staging/main armhf libltdl7 armhf 2.4.6-14 [388 kB]
Get:392 http://172.17.0.1/private bullseye-staging/main armhf libodbc1 armhf 2.3.6-0.1+b1 [187 kB]
Get:393 http://172.17.0.1/private bullseye-staging/main armhf libogdi4.1 armhf 4.1.0+ds-1 [170 kB]
Get:394 http://172.17.0.1/private bullseye-staging/main armhf liblcms2-2 armhf 2.9-4 [119 kB]
Get:395 http://172.17.0.1/private bullseye-staging/main armhf libnspr4 armhf 2:4.25-1 [90.2 kB]
Get:396 http://172.17.0.1/private bullseye-staging/main armhf libnss3 armhf 2:3.49.1-1 [979 kB]
Get:397 http://172.17.0.1/private bullseye-staging/main armhf libpoppler82 armhf 0.71.0-6 [1370 kB]
Get:398 http://172.17.0.1/private bullseye-staging/main armhf libpq5 armhf 12.3-1 [155 kB]
Get:399 http://172.17.0.1/private bullseye-staging/main armhf libqhull7deb1 armhf 2019.1-5 [218 kB]
Get:400 http://172.17.0.1/private bullseye-staging/main armhf libspatialite7 armhf 4.3.0a-6+b3 [1243 kB]
Get:401 http://172.17.0.1/private bullseye-staging/main armhf libxerces-c3.2 armhf 3.2.3+debian-1 [718 kB]
Get:402 http://172.17.0.1/private bullseye-staging/main armhf odbcinst armhf 2.3.6-0.1+b1 [47.7 kB]
Get:403 http://172.17.0.1/private bullseye-staging/main armhf odbcinst1debian2 armhf 2.3.6-0.1+b1 [70.8 kB]
Get:404 http://172.17.0.1/private bullseye-staging/main armhf libgdal26 armhf 3.0.4+dfsg-1+b3 [5314 kB]
Get:405 http://172.17.0.1/private bullseye-staging/main armhf libgeos-dev armhf 3.8.1-1 [359 kB]
Get:406 http://172.17.0.1/private bullseye-staging/main armhf libsqlite3-dev armhf 3.31.1-5 [711 kB]
Get:407 http://172.17.0.1/private bullseye-staging/main armhf libjbig-dev armhf 2.1-3.1+b2 [27.7 kB]
Get:408 http://172.17.0.1/private bullseye-staging/main armhf liblzma-dev armhf 5.2.4-1 [203 kB]
Get:409 http://172.17.0.1/private bullseye-staging/main armhf libtiffxx5 armhf 4.1.0+git191117-2 [117 kB]
Get:410 http://172.17.0.1/private bullseye-staging/main armhf libtiff-dev armhf 4.1.0+git191117-2 [362 kB]
Get:411 http://172.17.0.1/private bullseye-staging/main armhf libproj-dev armhf 7.0.1-1 [1049 kB]
Get:412 http://172.17.0.1/private bullseye-staging/main armhf libgeotiff-dev armhf 1.6.0-1 [91.6 kB]
Get:413 http://172.17.0.1/private bullseye-staging/main armhf libgif-dev armhf 5.1.9-1 [45.5 kB]
Get:414 http://172.17.0.1/private bullseye-staging/main armhf libnetcdf-dev armhf 1:4.7.4-1 [93.6 kB]
Get:415 http://172.17.0.1/private bullseye-staging/main armhf libhdf4-alt-dev armhf 4.2.15-1 [314 kB]
Get:416 http://172.17.0.1/private bullseye-staging/main armhf libjson-c-dev armhf 0.13.1+dfsg-7 [52.1 kB]
Get:417 http://172.17.0.1/private bullseye-staging/main armhf libkmlconvenience1 armhf 1.3.0-8 [44.0 kB]
Get:418 http://172.17.0.1/private bullseye-staging/main armhf libkmlregionator1 armhf 1.3.0-8 [22.6 kB]
Get:419 http://172.17.0.1/private bullseye-staging/main armhf libkmlxsd1 armhf 1.3.0-8 [30.4 kB]
Get:420 http://172.17.0.1/private bullseye-staging/main armhf libminizip-dev armhf 1.1-8+b1 [25.8 kB]
Get:421 http://172.17.0.1/private bullseye-staging/main armhf liburiparser-dev armhf 0.9.3-2 [22.0 kB]
Get:422 http://172.17.0.1/private bullseye-staging/main armhf libkml-dev armhf 1.3.0-8 [940 kB]
Get:423 http://172.17.0.1/private bullseye-staging/main armhf libltdl-dev armhf 2.4.6-14 [159 kB]
Get:424 http://172.17.0.1/private bullseye-staging/main armhf libogdi-dev armhf 4.1.0+ds-1 [37.1 kB]
Get:425 http://172.17.0.1/private bullseye-staging/main armhf libopenjp2-7-dev armhf 2.3.1-1 [46.7 kB]
Get:426 http://172.17.0.1/private bullseye-staging/main armhf libpcre16-3 armhf 2:8.39-12 [234 kB]
Get:427 http://172.17.0.1/private bullseye-staging/main armhf libpcre32-3 armhf 2:8.39-12 [227 kB]
Get:428 http://172.17.0.1/private bullseye-staging/main armhf libpcrecpp0v5 armhf 2:8.39-12 [150 kB]
Get:429 http://172.17.0.1/private bullseye-staging/main armhf libpcre3-dev armhf 2:8.39-12 [564 kB]
Get:430 http://172.17.0.1/private bullseye-staging/main armhf libpoppler-dev armhf 0.71.0-6 [23.9 kB]
Get:431 http://172.17.0.1/private bullseye-staging/main armhf libpoppler-private-dev armhf 0.71.0-6 [188 kB]
Get:432 http://172.17.0.1/private bullseye-staging/main armhf libpq-dev armhf 12.3-1 [126 kB]
Get:433 http://172.17.0.1/private bullseye-staging/main armhf libqhull-r7deb1 armhf 2019.1-5 [217 kB]
Get:434 http://172.17.0.1/private bullseye-staging/main armhf libqhullcpp7deb1 armhf 2019.1-5 [97.7 kB]
Get:435 http://172.17.0.1/private bullseye-staging/main armhf libqhull-dev armhf 2019.1-5 [382 kB]
Get:436 http://172.17.0.1/private bullseye-staging/main armhf libspatialite-dev armhf 4.3.0a-6+b3 [1448 kB]
Get:437 http://172.17.0.1/private bullseye-staging/main armhf libwebpdemux2 armhf 0.6.1-2 [86.7 kB]
Get:438 http://172.17.0.1/private bullseye-staging/main armhf libwebp-dev armhf 0.6.1-2 [304 kB]
Get:439 http://172.17.0.1/private bullseye-staging/main armhf libxerces-c-dev armhf 3.2.3+debian-1 [1481 kB]
Get:440 http://172.17.0.1/private bullseye-staging/main armhf libzstd-dev armhf 1.4.4+dfsg-3+rpi1 [259 kB]
Get:441 http://172.17.0.1/private bullseye-staging/main armhf unixodbc-dev armhf 2.3.6-0.1+b1 [232 kB]
Get:442 http://172.17.0.1/private bullseye-staging/main armhf libgdal-dev armhf 3.0.4+dfsg-1+b3 [6918 kB]
Get:443 http://172.17.0.1/private bullseye-staging/main armhf libopengl0 armhf 1.3.1-1 [39.4 kB]
Get:444 http://172.17.0.1/private bullseye-staging/main armhf libopengl-dev armhf 1.3.1-1 [5820 B]
Get:445 http://172.17.0.1/private bullseye-staging/main armhf libglvnd-dev armhf 1.3.1-1 [13.8 kB]
Get:446 http://172.17.0.1/private bullseye-staging/main armhf libgl1-mesa-dev armhf 19.3.3-1 [49.2 kB]
Get:447 http://172.17.0.1/private bullseye-staging/main armhf libgl2ps1.4 armhf 1.4.2+dfsg1-1 [34.8 kB]
Get:448 http://172.17.0.1/private bullseye-staging/main armhf libgl2ps-dev armhf 1.4.2+dfsg1-1 [24.7 kB]
Get:449 http://172.17.0.1/private bullseye-staging/main armhf libglew2.1 armhf 2.1.0-4 [160 kB]
Get:450 http://172.17.0.1/private bullseye-staging/main armhf libglu1-mesa armhf 9.0.1-1 [127 kB]
Get:451 http://172.17.0.1/private bullseye-staging/main armhf libglu1-mesa-dev armhf 9.0.1-1 [166 kB]
Get:452 http://172.17.0.1/private bullseye-staging/main armhf libglew-dev armhf 2.1.0-4 [141 kB]
Get:453 http://172.17.0.1/private bullseye-staging/main armhf libhwloc15 armhf 2.2.0+dfsg-3 [113 kB]
Get:454 http://172.17.0.1/private bullseye-staging/main armhf libpciaccess0 armhf 0.14-1 [51.0 kB]
Get:455 http://172.17.0.1/private bullseye-staging/main armhf libxnvctrl0 armhf 440.82-1 [25.2 kB]
Get:456 http://172.17.0.1/private bullseye-staging/main armhf libhwloc-plugins armhf 2.2.0+dfsg-3 [19.0 kB]
Get:457 http://172.17.0.1/private bullseye-staging/main armhf libpmix2 armhf 3.1.5-1 [377 kB]
Get:458 http://172.17.0.1/private bullseye-staging/main armhf librdmacm1 armhf 29.0-1 [58.2 kB]
Get:459 http://172.17.0.1/private bullseye-staging/main armhf libopenmpi3 armhf 4.0.3-6+rpi1 [1690 kB]
Get:460 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-openmpi-103-1 armhf 1.10.6+repack-2 [1231 kB]
Get:461 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-openmpi-fortran-102 armhf 1.10.6+repack-2 [93.3 kB]
Get:462 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-openmpi-hl-100 armhf 1.10.6+repack-2 [78.0 kB]
Get:463 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-openmpi-hl-fortran-100 armhf 1.10.6+repack-2 [49.6 kB]
Get:464 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-openmpi-cpp-103-1 armhf 1.10.6+repack-2 [128 kB]
Get:465 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-openmpi-hl-cpp-100 armhf 1.10.6+repack-2 [37.0 kB]
Get:466 http://172.17.0.1/private bullseye-staging/main armhf openmpi-common all 4.0.3-6+rpi1 [170 kB]
Get:467 http://172.17.0.1/private bullseye-staging/main armhf libnl-3-dev armhf 3.4.0-1 [92.4 kB]
Get:468 http://172.17.0.1/private bullseye-staging/main armhf libnl-route-3-dev armhf 3.4.0-1 [145 kB]
Get:469 http://172.17.0.1/private bullseye-staging/main armhf libibverbs-dev armhf 29.0-1 [199 kB]
Get:470 http://172.17.0.1/private bullseye-staging/main armhf libnuma1 armhf 2.0.12-1 [22.5 kB]
Get:471 http://172.17.0.1/private bullseye-staging/main armhf libnuma-dev armhf 2.0.12-1 [35.6 kB]
Get:472 http://172.17.0.1/private bullseye-staging/main armhf libhwloc-dev armhf 2.2.0+dfsg-3 [174 kB]
Get:473 http://172.17.0.1/private bullseye-staging/main armhf openmpi-bin armhf 4.0.3-6+rpi1 [185 kB]
Get:474 http://172.17.0.1/private bullseye-staging/main armhf libopenmpi-dev armhf 4.0.3-6+rpi1 [923 kB]
Get:475 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-openmpi-dev armhf 1.10.6+repack-2 [2230 kB]
Get:476 http://172.17.0.1/private bullseye-staging/main armhf mpi-default-dev armhf 1.13 [5476 B]
Get:477 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-mpi-dev armhf 1.10.6+repack-2 [32.1 kB]
Get:478 http://172.17.0.1/private bullseye-staging/main armhf libice-dev armhf 2:1.0.9-2 [58.8 kB]
Get:479 http://172.17.0.1/private bullseye-staging/main armhf node-jquery all 3.5.1+dfsg-3 [309 kB]
Get:480 http://172.17.0.1/private bullseye-staging/main armhf libjs-jquery all 3.5.1+dfsg-3 [3548 B]
Get:481 http://172.17.0.1/private bullseye-staging/main armhf libjs-underscore all 1.9.1~dfsg-1 [99.4 kB]
Get:482 http://172.17.0.1/private bullseye-staging/main armhf libjs-sphinxdoc all 2.4.3-2 [110 kB]
Get:483 http://172.17.0.1/private bullseye-staging/main armhf libkim-api2 armhf 2.1.3-5 [156 kB]
Get:484 http://172.17.0.1/private bullseye-staging/main armhf libkim-api-dev armhf 2.1.3-5 [289 kB]
Get:485 http://172.17.0.1/private bullseye-staging/main armhf libnetcdf-c++4 armhf 4.2-11+b2 [29.0 kB]
Get:486 http://172.17.0.1/private bullseye-staging/main armhf libnetcdf-cxx-legacy-dev armhf 4.2-11+b2 [52.0 kB]
Get:487 http://172.17.0.1/private bullseye-staging/main armhf libogg-dev armhf 1.3.2-1+b2 [194 kB]
Get:488 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8 armhf 3.8.3-1 [1365 kB]
Get:489 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8-dev armhf 3.8.3-1 [3015 kB]
Get:490 http://172.17.0.1/private bullseye-staging/main armhf libpython3-dev armhf 3.8.2-3 [21.0 kB]
Get:491 http://172.17.0.1/private bullseye-staging/main armhf libpython3-all-dev armhf 3.8.2-3 [1068 B]
Get:492 http://172.17.0.1/private bullseye-staging/main armhf libqt5designer5 armhf 5.12.5-2 [2651 kB]
Get:493 http://172.17.0.1/private bullseye-staging/main armhf libqt5designercomponents5 armhf 5.12.5-2 [620 kB]
Get:494 http://172.17.0.1/private bullseye-staging/main armhf libqt5help5 armhf 5.12.5-2 [118 kB]
Get:495 http://172.17.0.1/private bullseye-staging/main armhf libqt5opengl5 armhf 5.12.5+dfsg-10+rpi1 [146 kB]
Get:496 http://172.17.0.1/private bullseye-staging/main armhf libqt5opengl5-dev armhf 5.12.5+dfsg-10+rpi1 [71.3 kB]
Get:497 http://172.17.0.1/private bullseye-staging/main armhf libqt5sql5-sqlite armhf 5.12.5+dfsg-10+rpi1 [74.6 kB]
Get:498 http://172.17.0.1/private bullseye-staging/main armhf libqt5x11extras5 armhf 5.12.5-1 [11.4 kB]
Get:499 http://172.17.0.1/private bullseye-staging/main armhf libsm-dev armhf 2:1.2.3-1 [35.4 kB]
Get:500 http://172.17.0.1/private bullseye-staging/main armhf libsodium23 armhf 1.0.18-1 [143 kB]
Get:501 http://172.17.0.1/private bullseye-staging/main armhf libswscale5 armhf 7:4.2.2-1+b1 [170 kB]
Get:502 http://172.17.0.1/private bullseye-staging/main armhf libswscale-dev armhf 7:4.2.2-1+b1 [184 kB]
Get:503 http://172.17.0.1/private bullseye-staging/main armhf libsymspg1 armhf 1.15.1-1 [78.7 kB]
Get:504 http://172.17.0.1/private bullseye-staging/main armhf libsymspg-dev armhf 1.15.1-1 [87.3 kB]
Get:505 http://172.17.0.1/private bullseye-staging/main armhf libtcl8.6 armhf 8.6.10+dfsg-1 [886 kB]
Get:506 http://172.17.0.1/private bullseye-staging/main armhf libtheora-dev armhf 1.1.1+dfsg.1-15 [164 kB]
Get:507 http://172.17.0.1/private bullseye-staging/main armhf libxft2 armhf 2.3.2-2 [49.3 kB]
Get:508 http://172.17.0.1/private bullseye-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:509 http://172.17.0.1/private bullseye-staging/main armhf libtk8.6 armhf 8.6.10-1 [678 kB]
Get:510 http://172.17.0.1/private bullseye-staging/main armhf libvoro++1 armhf 0.4.6+dfsg1-3 [91.4 kB]
Get:511 http://172.17.0.1/private bullseye-staging/main armhf libjsoncpp-dev armhf 1.7.4-3.1 [81.0 kB]
Get:512 http://172.17.0.1/private bullseye-staging/main armhf libxt6 armhf 1:1.1.5-1+b3 [156 kB]
Get:513 http://172.17.0.1/private bullseye-staging/main armhf libvtk7.1p armhf 7.1.1+dfsg2-4 [31.5 MB]
Get:514 http://172.17.0.1/private bullseye-staging/main armhf libvtk7-jni armhf 7.1.1+dfsg2-4 [4177 kB]
Get:515 http://172.17.0.1/private bullseye-staging/main armhf libvtk7-java armhf 7.1.1+dfsg2-4 [2195 kB]
Get:516 http://172.17.0.1/private bullseye-staging/main armhf libxrender-dev armhf 1:0.9.10-1 [37.7 kB]
Get:517 http://172.17.0.1/private bullseye-staging/main armhf libxft-dev armhf 2.3.2-2 [60.3 kB]
Get:518 http://172.17.0.1/private bullseye-staging/main armhf x11proto-scrnsaver-dev all 2020.1-1 [3412 B]
Get:519 http://172.17.0.1/private bullseye-staging/main armhf libxss-dev armhf 1:1.2.3-1 [23.0 kB]
Get:520 http://172.17.0.1/private bullseye-staging/main armhf libxt-dev armhf 1:1.1.5-1+b3 [390 kB]
Get:521 http://172.17.0.1/private bullseye-staging/main armhf python3-cbor armhf 1.0.0-1.1+b1 [21.7 kB]
Get:522 http://172.17.0.1/private bullseye-staging/main armhf python3-lz4 armhf 3.0.2+dfsg-1 [30.6 kB]
Get:523 http://172.17.0.1/private bullseye-staging/main armhf python3-cffi-backend armhf 1.14.0-2 [73.4 kB]
Get:524 http://172.17.0.1/private bullseye-staging/main armhf python3-six all 1.14.0-3 [16.7 kB]
Get:525 http://172.17.0.1/private bullseye-staging/main armhf python3-nacl armhf 1.3.0-5 [45.0 kB]
Get:526 http://172.17.0.1/private bullseye-staging/main armhf python3-cryptography armhf 2.8-4 [198 kB]
Get:527 http://172.17.0.1/private bullseye-staging/main armhf python3-openssl all 19.1.0-2 [52.9 kB]
Get:528 http://172.17.0.1/private bullseye-staging/main armhf python3-pyqrcode all 1.2.1-4 [30.3 kB]
Get:529 http://172.17.0.1/private bullseye-staging/main armhf python3-attr all 19.3.0-4 [43.3 kB]
Get:530 http://172.17.0.1/private bullseye-staging/main armhf python3-pyasn1 all 0.4.2-4 [57.8 kB]
Get:531 http://172.17.0.1/private bullseye-staging/main armhf python3-pyasn1-modules all 0.2.1-1 [34.6 kB]
Get:532 http://172.17.0.1/private bullseye-staging/main armhf python3-service-identity all 18.1.0-6 [12.6 kB]
Get:533 http://172.17.0.1/private bullseye-staging/main armhf python3-snappy armhf 0.5.3-1.1+b1 [17.3 kB]
Get:534 http://172.17.0.1/private bullseye-staging/main armhf python3-trie all 0.2+ds-2 [7476 B]
Get:535 http://172.17.0.1/private bullseye-staging/main armhf python3-automat all 0.8.0-2 [27.4 kB]
Get:536 http://172.17.0.1/private bullseye-staging/main armhf python3-constantly all 15.1.0-2 [8356 B]
Get:537 http://172.17.0.1/private bullseye-staging/main armhf python3-idna all 2.9-1 [37.1 kB]
Get:538 http://172.17.0.1/private bullseye-staging/main armhf python3-hyperlink all 19.0.0-2 [36.0 kB]
Get:539 http://172.17.0.1/private bullseye-staging/main armhf python3-incremental all 16.10.1-3.2 [14.8 kB]
Get:540 http://172.17.0.1/private bullseye-staging/main armhf python3-pkg-resources all 46.1.3-1 [183 kB]
Get:541 http://172.17.0.1/private bullseye-staging/main armhf python3-zope.interface armhf 4.7.1-2 [92.0 kB]
Get:542 http://172.17.0.1/private bullseye-staging/main armhf python3-twisted-bin armhf 18.9.0-11 [21.0 kB]
Get:543 http://172.17.0.1/private bullseye-staging/main armhf python3-hamcrest all 1.9.0-3 [27.6 kB]
Get:544 http://172.17.0.1/private bullseye-staging/main armhf python3-twisted all 18.9.0-11 [1940 kB]
Get:545 http://172.17.0.1/private bullseye-staging/main armhf python3-txaio all 20.4.1-2 [18.9 kB]
Get:546 http://172.17.0.1/private bullseye-staging/main armhf python3-u-msgpack all 2.3.0-2 [8248 B]
Get:547 http://172.17.0.1/private bullseye-staging/main armhf python3-ubjson armhf 0.14.0-2+b2 [42.4 kB]
Get:548 http://172.17.0.1/private bullseye-staging/main armhf python3-wsaccel armhf 0.6.2-2+rvt [35.1 kB]
Get:549 http://172.17.0.1/private bullseye-staging/main armhf python3-autobahn all 17.10.1+dfsg1-6+rvt [164 kB]
Get:550 http://172.17.0.1/private bullseye-staging/main armhf mpi-default-bin armhf 1.13 [4672 B]
Get:551 http://172.17.0.1/private bullseye-staging/main armhf python3-mpi4py armhf 3.0.3-4 [697 kB]
Get:552 http://172.17.0.1/private bullseye-staging/main armhf python3-vtk7 armhf 7.1.1+dfsg2-4 [230 kB]
Get:553 http://172.17.0.1/private bullseye-staging/main armhf tcl8.6 armhf 8.6.10+dfsg-1 [123 kB]
Get:554 http://172.17.0.1/private bullseye-staging/main armhf tcl8.6-dev armhf 8.6.10+dfsg-1 [917 kB]
Get:555 http://172.17.0.1/private bullseye-staging/main armhf tcl armhf 8.6.9+1 [5636 B]
Get:556 http://172.17.0.1/private bullseye-staging/main armhf tcl-dev armhf 8.6.9+1 [8192 B]
Get:557 http://172.17.0.1/private bullseye-staging/main armhf tcl-vtk7 armhf 7.1.1+dfsg2-4 [130 kB]
Get:558 http://172.17.0.1/private bullseye-staging/main armhf tk8.6 armhf 8.6.10-1 [71.9 kB]
Get:559 http://172.17.0.1/private bullseye-staging/main armhf tk8.6-dev armhf 8.6.10-1 [700 kB]
Get:560 http://172.17.0.1/private bullseye-staging/main armhf tk armhf 8.6.9+1 [5676 B]
Get:561 http://172.17.0.1/private bullseye-staging/main armhf tk-dev armhf 8.6.9+1 [5500 B]
Get:562 http://172.17.0.1/private bullseye-staging/main armhf vtk7 armhf 7.1.1+dfsg2-4 [135 kB]
Get:563 http://172.17.0.1/private bullseye-staging/main armhf libvtk7-dev armhf 7.1.1+dfsg2-4 [2244 kB]
Get:564 http://172.17.0.1/private bullseye-staging/main armhf libvtk7.1p-qt armhf 7.1.1+dfsg2-4 [87.8 kB]
Get:565 http://172.17.0.1/private bullseye-staging/main armhf qdoc-qt5 armhf 5.12.5-2 [435 kB]
Get:566 http://172.17.0.1/private bullseye-staging/main armhf qhelpgenerator-qt5 armhf 5.12.5-2 [63.4 kB]
Get:567 http://172.17.0.1/private bullseye-staging/main armhf qt5-assistant armhf 5.12.5-2 [354 kB]
Get:568 http://172.17.0.1/private bullseye-staging/main armhf qtattributionsscanner-qt5 armhf 5.12.5-2 [31.1 kB]
Get:569 http://172.17.0.1/private bullseye-staging/main armhf qttools5-dev-tools armhf 5.12.5-2 [914 kB]
Get:570 http://172.17.0.1/private bullseye-staging/main armhf qttools5-dev armhf 5.12.5-2 [177 kB]
Get:571 http://172.17.0.1/private bullseye-staging/main armhf qttools5-private-dev armhf 5.12.5-2 [77.6 kB]
Get:572 http://172.17.0.1/private bullseye-staging/main armhf libvtk7-qt-dev armhf 7.1.1+dfsg2-4 [22.6 kB]
Get:573 http://172.17.0.1/private bullseye-staging/main armhf opencl-c-headers all 3.0~2020.05.12-g5cc337c-1 [38.3 kB]
Get:574 http://172.17.0.1/private bullseye-staging/main armhf opencl-clhpp-headers all 2.2.0~~2.0.11+git9-g0192662-1 [54.0 kB]
Get:575 http://172.17.0.1/private bullseye-staging/main armhf ocl-icd-opencl-dev armhf 2.2.12-4 [10.9 kB]
Get:576 http://172.17.0.1/private bullseye-staging/main armhf python-babel-localedata all 2.8.0+dfsg.1-3 [4998 kB]
Get:577 http://172.17.0.1/private bullseye-staging/main armhf python3-alabaster all 0.7.8-1.1 [18.6 kB]
Get:578 http://172.17.0.1/private bullseye-staging/main armhf python3-all armhf 3.8.2-3 [1056 B]
Get:579 http://172.17.0.1/private bullseye-staging/main armhf python3.8-dev armhf 3.8.3-1 [519 kB]
Get:580 http://172.17.0.1/private bullseye-staging/main armhf python3-dev armhf 3.8.2-3 [1164 B]
Get:581 http://172.17.0.1/private bullseye-staging/main armhf python3-all-dev armhf 3.8.2-3 [1064 B]
Get:582 http://172.17.0.1/private bullseye-staging/main armhf python3-tz all 2019.3-2 [27.3 kB]
Get:583 http://172.17.0.1/private bullseye-staging/main armhf python3-babel all 2.8.0+dfsg.1-3 [99.8 kB]
Get:584 http://172.17.0.1/private bullseye-staging/main armhf python3-certifi all 2020.4.5.1-1 [151 kB]
Get:585 http://172.17.0.1/private bullseye-staging/main armhf python3-chardet all 3.0.4-7 [81.1 kB]
Get:586 http://172.17.0.1/private bullseye-staging/main armhf python3-roman all 2.0.0-4 [8972 B]
Get:587 http://172.17.0.1/private bullseye-staging/main armhf python3-docutils all 0.16+dfsg-2 [383 kB]
Get:588 http://172.17.0.1/private bullseye-staging/main armhf python3-imagesize all 1.2.0-2 [5824 B]
Get:589 http://172.17.0.1/private bullseye-staging/main armhf python3-markupsafe armhf 1.1.1-1 [15.0 kB]
Get:590 http://172.17.0.1/private bullseye-staging/main armhf python3-jinja2 all 2.10.1-2 [107 kB]
Get:591 http://172.17.0.1/private bullseye-staging/main armhf python3-pyparsing all 2.4.7-1 [109 kB]
Get:592 http://172.17.0.1/private bullseye-staging/main armhf python3-packaging all 20.3-1.2 [29.9 kB]
Get:593 http://172.17.0.1/private bullseye-staging/main armhf python3-pygments all 2.3.1+dfsg-3 [596 kB]
Get:594 http://172.17.0.1/private bullseye-staging/main armhf python3-urllib3 all 1.25.9-1 [105 kB]
Get:595 http://172.17.0.1/private bullseye-staging/main armhf python3-requests all 2.23.0+dfsg-2 [71.4 kB]
Get:596 http://172.17.0.1/private bullseye-staging/main armhf sphinx-common all 2.4.3-2 [550 kB]
Get:597 http://172.17.0.1/private bullseye-staging/main armhf python3-sphinx all 2.4.3-2 [502 kB]
Get:598 http://172.17.0.1/private bullseye-staging/main armhf voro++-dev armhf 0.4.6+dfsg1-3 [126 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Selecting previously unselected package libbsd0:armhf.
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Unpacking libbsd0:armhf (0.10.0-1) ...
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Unpacking libtinfo5:armhf (6.2-1) ...
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Unpacking libatomic1:armhf (10.1.0-1+rpi1) over (10-20200418-1+rpi1) ...
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Unpacking libubsan1:armhf (10.1.0-1+rpi1) over (10-20200418-1+rpi1) ...
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Unpacking libgomp1:armhf (10.1.0-1+rpi1) over (10-20200418-1+rpi1) ...
Preparing to unpack .../6-gcc-10-base_10.1.0-1+rpi1_armhf.deb ...
Unpacking gcc-10-base:armhf (10.1.0-1+rpi1) over (10-20200418-1+rpi1) ...
Setting up gcc-10-base:armhf (10.1.0-1+rpi1) ...
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Preparing to unpack .../libgcc-s1_10.1.0-1+rpi1_armhf.deb ...
Unpacking libgcc-s1:armhf (10.1.0-1+rpi1) over (10-20200418-1+rpi1) ...
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Setting up libgstreamer-plugins-base1.0-0:armhf (1.16.2-4) ...
Setting up python3 (3.8.2-3) ...
Setting up libnss3:armhf (2:3.49.1-1) ...
Setting up libxcb-shm0:armhf (1.14-2) ...
Setting up libxcb-icccm4:armhf (0.4.1-1.1) ...
Setting up libkim-api2:armhf (2.1.3-5) ...
Setting up libxcb-util0:armhf (0.3.8-3+b2) ...
Setting up libepsilon1:armhf (0.9.2+dfsg-4) ...
Setting up python3-markupsafe (1.1.1-1) ...
Setting up libkim-api-dev (2.1.3-5) ...
Setting up libdapserver7v5:armhf (3.20.5-1) ...
Setting up libqt5network5:armhf (5.12.5+dfsg-10+rpi1) ...
Setting up python3-tz (2019.3-2) ...
Setting up libxcb-xkb1:armhf (1.14-2) ...
Setting up libxcb-image0:armhf (0.4.0-1+b2) ...
Setting up liburiparser-dev (0.9.3-2) ...
Setting up libnuma-dev:armhf (2.0.12-1) ...
Setting up libnl-route-3-200:armhf (3.4.0-1) ...
Setting up libxcb-present0:armhf (1.14-2) ...
Setting up libqt5sql5:armhf (5.12.5+dfsg-10+rpi1) ...
Setting up python3-six (1.14.0-3) ...
Setting up libthai0:armhf (0.1.28-3) ...
Setting up ca-certificates (20190110) ...
Updating certificates in /etc/ssl/certs...
128 added, 0 removed; done.
Setting up qtbase5-dev-tools (5.12.5+dfsg-10+rpi1) ...
Setting up libvorbisfile3:armhf (1.3.6-2) ...
Setting up libxdmcp-dev:armhf (1:1.1.2-3) ...
Setting up python3-roman (2.0.0-4) ...
Setting up libqt5xml5:armhf (5.12.5+dfsg-10+rpi1) ...
Setting up python3-jinja2 (2.10.1-2) ...
Setting up libxml2-dev:armhf (2.9.10+dfsg-5) ...
Setting up libwebp-dev:armhf (0.6.1-2) ...
Setting up libxcb-xinerama0:armhf (1.14-2) ...
Setting up libunbound8:armhf (1.10.0-1) ...
Setting up libqhullcpp7deb1:armhf (2019.1-5) ...
Setting up python3-pyparsing (2.4.7-1) ...
Setting up libfreetype6:armhf (2.10.1-2) ...
Setting up python3-certifi (2020.4.5.1-1) ...
Setting up libtiff-dev:armhf (4.1.0+git191117-2) ...
Setting up libopenjp2-7-dev (2.3.1-1) ...
Setting up libxcb-sync1:armhf (1.14-2) ...
Setting up libqt5qml5:armhf (5.12.5-5) ...
Setting up libkmlregionator1:armhf (1.3.0-8) ...
Setting up x11proto-core-dev (2020.1-1) ...
Setting up libpython3.8:armhf (3.8.3-1) ...
Setting up libgeos-dev (3.8.1-1) ...
Setting up python3-incremental (16.10.1-3.2) ...
Setting up shared-mime-info (1.15-1) ...
Setting up bsdmainutils (11.1.2) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up libxkbcommon-x11-0:armhf (0.10.0-1) ...
Setting up qtattributionsscanner-qt5 (5.12.5-2) ...
Setting up libevent-dev (2.1.11-stable-1) ...
Setting up liblapack-dev:armhf (3.9.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode
Setting up libeigen3-dev (3.3.7-2) ...
Setting up libgssapi-krb5-2:armhf (1.17-7+rpi1) ...
Setting up python3-idna (2.9-1) ...
Setting up cython3 (0.29.14-1) ...
Setting up libcroco3:armhf (0.6.13-1) ...
Setting up python3-pyqrcode (1.2.1-4) ...
Setting up libodbc1:armhf (2.3.6-0.1+b1) ...
Setting up libqt5webchannel5:armhf (5.12.5-2) ...
Setting up ucf (3.0038+nmu1) ...
Setting up libqhull-dev:armhf (2019.1-5) ...
Setting up ocl-icd-opencl-dev:armhf (2.2.12-4) ...
Setting up autoconf (2.69-11.1) ...
Setting up python3-urllib3 (1.25.9-1) ...
Setting up libxcb-dri2-0:armhf (1.14-2) ...
Setting up dh-strip-nondeterminism (1.8.0-1) ...
Setting up x11proto-xext-dev (2020.1-1) ...
Setting up libdrm2:armhf (2.4.101-2+rpi1) ...
Setting up libhdf5-103-1:armhf (1.10.6+repack-2) ...
Setting up dwz (0.13-5) ...
Setting up libnl-3-dev:armhf (3.4.0-1) ...
Setting up libva-drm2:armhf (2.7.1-1) ...
Setting up groff-base (1.22.4-5) ...
Setting up libxcb-randr0:armhf (1.14-2) ...
Setting up xml-core (0.18+nmu1) ...
Setting up tcl (8.6.9+1) ...
Setting up procps (2:3.3.16-4) ...
update-alternatives: using /usr/bin/w.procps to provide /usr/bin/w (w) in auto mode
Setting up libxslt1.1:armhf (1.1.34-4) ...
Setting up libhdf5-cpp-103-1:armhf (1.10.6+repack-2) ...
Setting up python3-pyasn1 (0.4.2-4) ...
Setting up python3-wsaccel (0.6.2-2+rvt) ...
Setting up python3-snappy (0.5.3-1.1+b1) ...
Setting up libcurl4:armhf (7.68.0-1) ...
Setting up libx11-6:armhf (2:1.6.9-2) ...
Setting up libharfbuzz0b:armhf (2.6.4-1+rpi1) ...
Setting up python3-constantly (15.1.0-2) ...
Setting up libarmadillo9 (1:9.800.4+dfsg-1) ...
Setting up libjs-jquery (3.5.1+dfsg-3) ...
Setting up python3-ubjson (0.14.0-2+b2) ...
Setting up libepsilon-dev:armhf (0.9.2+dfsg-4) ...
Setting up libsuperlu-dev:armhf (5.2.1+dfsg1-4) ...
Setting up python3-trie (0.2+ds-2) ...
Setting up x11proto-scrnsaver-dev (2020.1-1) ...
Setting up python3-lib2to3 (3.8.2-2) ...
Setting up libwacom2:armhf (1.3-2) ...
Setting up libsm6:armhf (2:1.2.3-1) ...
Setting up libfftw3-dev:armhf (3.3.8-2) ...
Setting up libopenmpt0:armhf (0.4.11-1) ...
Setting up libavahi-client3:armhf (0.8-1) ...
Setting up python3-u-msgpack (2.3.0-2) ...
Setting up libllvm9:armhf (1:9.0.1-12+rpi1) ...
Setting up python3-cffi-backend (1.14.0-2) ...
Setting up python3-imagesize (1.2.0-2) ...
Setting up libdrm-amdgpu1:armhf (2.4.101-2+rpi1) ...
Setting up libhdf5-hl-100:armhf (1.10.6+repack-2) ...
Setting up python3-pkg-resources (46.1.3-1) ...
Setting up python3-cbor (1.0.0-1.1+b1) ...
Setting up libssh-gcrypt-4:armhf (0.9.4-1) ...
Setting up automake (1:1.16.2-1) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up python3-distutils (3.8.2-2) ...
Setting up dh-python (4.20200315) ...
Setting up libllvm8:armhf (1:8.0.1-9+rpi1) ...
Setting up libkml-dev:armhf (1.3.0-8) ...
Setting up libxcb-dri3-0:armhf (1.14-2) ...
Setting up python3-attr (19.3.0-4) ...
Setting up libibverbs1:armhf (29.0-1) ...
Setting up libgnutls-dane0:armhf (3.6.13-2) ...
Setting up libdrm-nouveau2:armhf (2.4.101-2+rpi1) ...
Setting up libarpack2-dev:armhf (3.7.0-3) ...
Setting up gettext (0.19.8.1-10) ...
Setting up libxdamage1:armhf (1:1.1.5-2) ...
Setting up libxcb1-dev:armhf (1.14-2) ...
Setting up libqt5sql5-sqlite:armhf (5.12.5+dfsg-10+rpi1) ...
Setting up libxrender1:armhf (1:0.9.10-1) ...
Setting up gfortran-9 (9.3.0-11+rpi1) ...
Setting up libgbm1:armhf (19.3.3-1) ...
Setting up ibverbs-providers:armhf (29.0-1) ...
Setting up python3-babel (2.8.0+dfsg.1-3) ...
update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode
Setting up python3-lz4 (3.0.2+dfsg-1) ...
Setting up python3-zope.interface (4.7.1-2) ...
Setting up libsm-dev:armhf (2:1.2.3-1) ...
Setting up libdrm-radeon1:armhf (2.4.101-2+rpi1) ...
Setting up fontconfig-config (2.13.1-4.2) ...
Setting up openssh-client (1:8.2p1-4) ...
Setting up python3-alabaster (0.7.8-1.1) ...
Setting up python3-automat (0.8.0-2) ...
Setting up libgl1-mesa-dri:armhf (19.3.3-1) ...
Setting up libclang1-8 (1:8.0.1-9+rpi1) ...
Setting up python3-twisted-bin:armhf (18.9.0-11) ...
Setting up libpq5:armhf (12.3-1) ...
Setting up libx11-dev:armhf (2:1.6.9-2) ...
Setting up libxext6:armhf (2:1.3.3-1+b2) ...
Setting up python3-all (3.8.2-3) ...
Setting up libpq-dev (12.3-1) ...
Setting up libcurl3-gnutls:armhf (7.68.0-1) ...
Setting up python3-hamcrest (1.9.0-3) ...
Setting up libcurl4-gnutls-dev:armhf (7.68.0-1) ...
Setting up man-db (2.9.1-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up gfortran (4:9.2.1-3.1+rpi1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up libxxf86vm1:armhf (1:1.1.4-1+b2) ...
Setting up libinput-bin (1.15.5-1) ...
Setting up libfreetype-dev:armhf (2.10.1-2) ...
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up libxnvctrl0:armhf (440.82-1) ...
Setting up libnl-route-3-dev:armhf (3.4.0-1) ...
Setting up libltdl-dev:armhf (2.4.6-14) ...
Setting up python3-pygments (2.3.1+dfsg-3) ...
Setting up libegl-mesa0:armhf (19.3.3-1) ...
Setting up libhdf5-hl-cpp-100:armhf (1.10.6+repack-2) ...
Setting up libcfitsio8:armhf (3.470-4) ...
Setting up python3-packaging (20.3-1.2) ...
Setting up python3-chardet (3.0.4-7) ...
Setting up libpython3.8-dev:armhf (3.8.3-1) ...
Setting up libxfixes3:armhf (1:5.0.3-2) ...
Setting up python3-pyasn1-modules (0.2.1-1) ...
Setting up python3-cryptography (2.8-4) ...
Setting up libgdk-pixbuf2.0-0:armhf (2.40.0+dfsg-4) ...
Setting up python3-requests (2.23.0+dfsg-2) ...
Setting up python3-hyperlink (19.0.0-2) ...
Setting up python3-service-identity (18.1.0-6) ...
Setting up libhdf5-fortran-102:armhf (1.10.6+repack-2) ...
Setting up libxt6:armhf (1:1.1.5-1+b3) ...
Setting up libjs-sphinxdoc (2.4.3-2) ...
Setting up tcl-dev:armhf (8.6.9+1) ...
Setting up python3.8-dev (3.8.3-1) ...
Setting up libxext-dev:armhf (2:1.3.3-1+b2) ...
Setting up libcups2:armhf (2.3.3-1) ...
Setting up libvdpau1:armhf (1.4-1) ...
Setting up libnetcdf18:armhf (1:4.7.4-1) ...
Setting up libdapclient6v5:armhf (3.20.5-1) ...
Setting up libegl1:armhf (1.3.1-1) ...
Setting up cmake (3.16.3-3+rpi1) ...
Setting up libhdf5-hl-fortran-100:armhf (1.10.6+repack-2) ...
Setting up libhwloc-dev:armhf (2.2.0+dfsg-3) ...
Setting up libxss1:armhf (1:1.2.3-1) ...
Setting up libfontconfig1:armhf (2.13.1-4.2) ...
Setting up libbluray2:armhf (1:1.2.0-1) ...
Setting up libva-x11-2:armhf (2.7.1-1) ...
Setting up libproj19:armhf (7.0.1-1) ...
Setting up libxrender-dev:armhf (1:0.9.10-1) ...
Setting up libdap-dev:armhf (3.20.5-1) ...
Setting up python3-nacl (1.3.0-5) ...
Setting up libspatialite7:armhf (4.3.0a-6+b3) ...
Setting up libgnutls28-dev:armhf (3.6.13-2) ...
Setting up libinput10:armhf (1.15.5-1) ...
Setting up librdmacm1:armhf (29.0-1) ...
Setting up fontconfig (2.13.1-4.2) ...
Regenerating fonts cache... done.
Setting up libxft2:armhf (2.3.2-2) ...
Setting up libglx-mesa0:armhf (19.3.3-1) ...
Setting up libcfitsio-dev:armhf (3.470-4) ...
Setting up libpython3-dev:armhf (3.8.2-3) ...
Setting up libxerces-c3.2:armhf (3.2.3+debian-1) ...
Setting up libglx0:armhf (1.3.1-1) ...
Setting up python3-openssl (19.1.0-2) ...
Setting up qdoc-qt5 (5.12.5-2) ...
Setting up po-debconf (1.0.21) ...
Setting up libtk8.6:armhf (8.6.10-1) ...
Setting up libpango-1.0-0:armhf (1.44.7-4) ...
Setting up libqt5gui5:armhf (5.12.5+dfsg-10+rpi1) ...
Setting up libpoppler82:armhf (0.71.0-6) ...
Setting up libqt5widgets5:armhf (5.12.5+dfsg-10+rpi1) ...
Setting up libibverbs-dev:armhf (29.0-1) ...
Setting up libxss-dev:armhf (1:1.2.3-1) ...
Setting up libhwloc-plugins:armhf (2.2.0+dfsg-3) ...
Setting up libqt5help5:armhf (5.12.5-2) ...
Setting up libcairo2:armhf (1.16.0-4) ...
Setting up libnetcdf-c++4 (4.2-11+b2) ...
Setting up libavutil56:armhf (7:4.2.2-1+b1) ...
Setting up libgeotiff5:armhf (1.6.0-1) ...
Setting up libfreetype6-dev:armhf (2.10.1-2) ...
Setting up libqt5printsupport5:armhf (5.12.5+dfsg-10+rpi1) ...
Setting up libgl1:armhf (1.3.1-1) ...
Setting up libxt-dev:armhf (1:1.1.5-1+b3) ...
Setting up libxerces-c-dev:armhf (3.2.3+debian-1) ...
Setting up libpython3-all-dev:armhf (3.8.2-3) ...
Setting up python3-twisted (18.9.0-11) ...
Setting up sphinx-common (2.4.3-2) ...
Setting up python3-dev (3.8.2-3) ...
Setting up libhdf5-dev (1.10.6+repack-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5-serial.pc to provide /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5.pc (hdf5.pc) in auto mode
Setting up libproj-dev:armhf (7.0.1-1) ...
Setting up libnetcdf-dev (1:4.7.4-1) ...
Setting up libspatialite-dev:armhf (4.3.0a-6+b3) ...
Setting up libmariadb-dev (1:10.3.22-1) ...
Setting up libglew2.1:armhf (2.1.0-4) ...
Setting up libqt5opengl5:armhf (5.12.5+dfsg-10+rpi1) ...
Setting up libtheora0:armhf (1.1.1+dfsg.1-15) ...
Setting up libglx-dev:armhf (1.3.1-1) ...
Setting up python3-txaio (20.4.1-2) ...
Setting up python3-autobahn (17.10.1+dfsg1-6+rvt) ...
Setting up libswscale5:armhf (7:4.2.2-1+b1) ...
Setting up libglu1-mesa:armhf (9.0.1-1) ...
Setting up libpangoft2-1.0-0:armhf (1.44.7-4) ...
Setting up libqt5quick5:armhf (5.12.5-5) ...
Setting up libgl-dev:armhf (1.3.1-1) ...
Setting up libpangocairo-1.0-0:armhf (1.44.7-4) ...
Setting up libpoppler-dev:armhf (0.71.0-6) ...
Setting up python3-all-dev (3.8.2-3) ...
Setting up libavutil-dev:armhf (7:4.2.2-1+b1) ...
Setting up libqt5quickshapes5:armhf (5.12.5-5) ...
Setting up tk8.6 (8.6.10-1) ...
Setting up libmariadb-dev-compat:armhf (1:10.3.22-1) ...
Setting up libqt5x11extras5:armhf (5.12.5-1) ...
Setting up libqt5quicktest5:armhf (5.12.5-5) ...
Setting up libqt5designer5:armhf (5.12.5-2) ...
Setting up libegl-dev:armhf (1.3.1-1) ...
Setting up libpmix2:armhf (3.1.5-1) ...
Setting up libgeotiff-dev:armhf (1.6.0-1) ...
Setting up libfontconfig-dev:armhf (2.13.1-4.2) ...
Setting up qtdeclarative5-dev-tools (5.12.5-5) ...
Setting up libopenmpi3:armhf (4.0.3-6+rpi1) ...
Setting up libpoppler-private-dev:armhf (0.71.0-6) ...
Setting up qhelpgenerator-qt5 (5.12.5-2) ...
Setting up libqt5webkit5:armhf (5.212.0~alpha4-1+rpi1) ...
Setting up libnetcdf-cxx-legacy-dev (4.2-11+b2) ...
Setting up libqt5designercomponents5:armhf (5.12.5-2) ...
Setting up libswresample3:armhf (7:4.2.2-1+b1) ...
Setting up libgl2ps1.4 (1.4.2+dfsg1-1) ...
Setting up qt5-qmltooling-plugins:armhf (5.12.5-5) ...
Setting up libqt5quickwidgets5:armhf (5.12.5-5) ...
Setting up librsvg2-2:armhf (2.48.3-1) ...
Setting up libarmadillo-dev (1:9.800.4+dfsg-1) ...
Setting up libtheora-dev:armhf (1.1.1+dfsg.1-15) ...
Setting up libswscale-dev:armhf (7:4.2.2-1+b1) ...
Setting up libhdf4-alt-dev (4.2.15-1) ...
Setting up libglu1-mesa-dev:armhf (9.0.1-1) ...
Setting up qt5-assistant (5.12.5-2) ...
Setting up qttools5-dev-tools (5.12.5-2) ...
Setting up libavcodec58:armhf (7:4.2.2-1+b1) ...
Setting up libqt5quickparticles5:armhf (5.12.5-5) ...
Setting up libgles-dev:armhf (1.3.1-1) ...
Setting up tk (8.6.9+1) ...
Setting up openmpi-bin (4.0.3-6+rpi1) ...
update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode
update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode
Setting up libhdf5-openmpi-103-1:armhf (1.10.6+repack-2) ...
Setting up libxft-dev:armhf (2.3.2-2) ...
Setting up libchromaprint1:armhf (1.5.0-1) ...
Setting up default-libmysqlclient-dev:armhf (1.0.5+b5) ...
Setting up libfontconfig1-dev:armhf (2.13.1-4.2) ...
Setting up libswresample-dev:armhf (7:4.2.2-1+b1) ...
Setting up libavformat58:armhf (7:4.2.2-1+b1) ...
Setting up libavcodec-dev:armhf (7:4.2.2-1+b1) ...
Setting up mpi-default-bin (1.13) ...
Setting up libglvnd-dev:armhf (1.3.1-1) ...
Setting up libavformat-dev:armhf (7:4.2.2-1+b1) ...
Setting up python3-mpi4py (3.0.3-4) ...
Setting up libgl2ps-dev (1.4.2+dfsg1-1) ...
Setting up libglew-dev:armhf (2.1.0-4) ...
Setting up libhdf5-openmpi-fortran-102:armhf (1.10.6+repack-2) ...
Setting up tk8.6-dev:armhf (8.6.10-1) ...
Setting up qtbase5-dev:armhf (5.12.5+dfsg-10+rpi1) ...
Setting up qtdeclarative5-dev:armhf (5.12.5-5) ...
Setting up libhdf5-openmpi-hl-100:armhf (1.10.6+repack-2) ...
Setting up libgl1-mesa-dev:armhf (19.3.3-1) ...
Setting up libopenmpi-dev:armhf (4.0.3-6+rpi1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/openmpi/include to provide /usr/include/arm-linux-gnueabihf/mpi (mpi-arm-linux-gnueabihf) in auto mode
Setting up libhdf5-openmpi-cpp-103-1:armhf (1.10.6+repack-2) ...
Setting up libhdf5-openmpi-hl-cpp-100:armhf (1.10.6+repack-2) ...
Setting up libhdf5-openmpi-hl-fortran-100:armhf (1.10.6+repack-2) ...
Setting up libqt5opengl5-dev:armhf (5.12.5+dfsg-10+rpi1) ...
Setting up libqt5webkit5-dev:armhf (5.212.0~alpha4-1+rpi1) ...
Setting up tk-dev:armhf (8.6.9+1) ...
Setting up qttools5-dev:armhf (5.12.5-2) ...
Setting up mpi-default-dev (1.13) ...
Setting up libhdf5-openmpi-dev (1.10.6+repack-2) ...
update-alternatives: using /usr/bin/h5pcc.openmpi to provide /usr/bin/h5pcc (h5pcc) in auto mode
update-alternatives: using /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5-openmpi.pc to provide /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5.pc (hdf5.pc) in auto mode
update-alternatives: updating alternative /usr/bin/mpicc.openmpi because link group mpi has changed slave links
update-alternatives: using /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5-mpi.pc to provide /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5.pc (hdf5.pc) in auto mode
Setting up qttools5-private-dev:armhf (5.12.5-2) ...
Setting up libhdf5-mpi-dev (1.10.6+repack-2) ...
Setting up odbcinst (2.3.6-0.1+b1) ...
Setting up dh-autoreconf (19) ...
Setting up odbcinst1debian2:armhf (2.3.6-0.1+b1) ...
Setting up unixodbc-dev:armhf (2.3.6-0.1+b1) ...
Setting up libgdal26 (3.0.4+dfsg-1+b3) ...
Setting up debhelper (13) ...
Setting up libvtk7.1p (7.1.1+dfsg2-4) ...
Setting up libvtk7.1p-qt (7.1.1+dfsg2-4) ...
Setting up libvtk7-jni (7.1.1+dfsg2-4) ...
Setting up libgdal-dev (3.0.4+dfsg-1+b3) ...
Setting up tcl-vtk7 (7.1.1+dfsg2-4) ...
Setting up libvtk7-java (7.1.1+dfsg2-4) ...
Setting up vtk7 (7.1.1+dfsg2-4) ...
Setting up python3-vtk7 (7.1.1+dfsg2-4) ...
Setting up libvtk7-dev (7.1.1+dfsg2-4) ...
Setting up libvtk7-qt-dev (7.1.1+dfsg2-4) ...
Processing triggers for libc-bin (2.30-7+rpi1) ...
Processing triggers for sgml-base (1.30) ...
Setting up docutils-common (0.16+dfsg-2) ...
Processing triggers for sgml-base (1.30) ...
Setting up python3-docutils (0.16+dfsg-2) ...
update-alternatives: using /usr/share/docutils/scripts/python3/rst-buildhtml to provide /usr/bin/rst-buildhtml (rst-buildhtml) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2html to provide /usr/bin/rst2html (rst2html) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2html4 to provide /usr/bin/rst2html4 (rst2html4) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2html5 to provide /usr/bin/rst2html5 (rst2html5) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2latex to provide /usr/bin/rst2latex (rst2latex) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2man to provide /usr/bin/rst2man (rst2man) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt to provide /usr/bin/rst2odt (rst2odt) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt_prepstyles to provide /usr/bin/rst2odt_prepstyles (rst2odt_prepstyles) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2pseudoxml to provide /usr/bin/rst2pseudoxml (rst2pseudoxml) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2s5 to provide /usr/bin/rst2s5 (rst2s5) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2xetex to provide /usr/bin/rst2xetex (rst2xetex) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2xml to provide /usr/bin/rst2xml (rst2xml) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rstpep2html to provide /usr/bin/rstpep2html (rstpep2html) in auto mode
Setting up python3-sphinx (2.4.3-2) ...
update-alternatives: using /usr/share/sphinx/scripts/python3/sphinx-apidoc to provide /usr/bin/sphinx-apidoc (sphinx-apidoc) in auto mode
update-alternatives: using /usr/share/sphinx/scripts/python3/sphinx-autogen to provide /usr/bin/sphinx-autogen (sphinx-autogen) in auto mode
update-alternatives: using /usr/share/sphinx/scripts/python3/sphinx-build to provide /usr/bin/sphinx-build (sphinx-build) in auto mode
update-alternatives: using /usr/share/sphinx/scripts/python3/sphinx-quickstart to provide /usr/bin/sphinx-quickstart (sphinx-quickstart) in auto mode
Setting up sbuild-build-depends-lammps-dummy (0.invalid.0) ...
Processing triggers for ca-certificates (20190110) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.15.0-76-generic armhf (armv8l)
Toolchain package versions: binutils_2.34-5+rpi1 dpkg-dev_1.19.7 g++-9_9.3.0-11+rpi1 gcc-9_9.3.0-11+rpi1 libc6-dev_2.30-7+rpi1 libstdc++-9-dev_9.3.0-11+rpi1 libstdc++6_10.1.0-1+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2
Package versions: adduser_3.118 apt_2.1.0 autoconf_2.69-11.1 automake_1:1.16.2-1 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11+rpi1 base-passwd_3.5.47 bash_5.0-6 binutils_2.34-5+rpi1 binutils-arm-linux-gnueabihf_2.34-5+rpi1 binutils-common_2.34-5+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.35.1-2 build-essential_12.8 bzip2_1.0.8-2 ca-certificates_20190110 cmake_3.16.3-3+rpi1 cmake-data_3.16.3-3+rpi1 coreutils_8.30-3 cpp_4:9.2.1-3.1+rpi1 cpp-9_9.3.0-11+rpi1 cython3_0.29.14-1 dash_0.5.10.2-7 debconf_1.5.74 debhelper_13 debianutils_4.9.1 default-libmysqlclient-dev_1.0.5+b5 dh-autoreconf_19 dh-python_4.20200315 dh-strip-nondeterminism_1.8.0-1 diffutils_1:3.7-3 dirmngr_2.2.20-1 docutils-common_0.16+dfsg-2 dpkg_1.19.7 dpkg-dev_1.19.7 dwz_0.13-5 e2fsprogs_1.45.6-1 fakeroot_1.24-1 fdisk_2.35.1-2 file_1:5.38-5 findutils_4.7.0-1 fontconfig_2.13.1-4.2 fontconfig-config_2.13.1-4.2 fonts-dejavu-core_2.37-1 g++_4:9.2.1-3.1+rpi1 g++-9_9.3.0-11+rpi1 gcc_4:9.2.1-3.1+rpi1 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libpcrecpp0v5_2:8.39-12 libperl5.30_5.30.0-10 libpipeline1_1.5.2-2 libpixman-1-0_0.36.0-1 libpmix2_3.1.5-1 libpng-dev_1.6.37-2 libpng16-16_1.6.37-2 libpoppler-dev_0.71.0-6 libpoppler-private-dev_0.71.0-6 libpoppler82_0.71.0-6 libpopt0_1.16-14 libpq-dev_12.3-1 libpq5_12.3-1 libprocps8_2:3.3.16-4 libproj-dev_7.0.1-1 libproj19_7.0.1-1 libpsl5_0.21.0-1 libpthread-stubs0-dev_0.4-1 libpython3-all-dev_3.8.2-3 libpython3-dev_3.8.2-3 libpython3-stdlib_3.8.2-3 libpython3.8_3.8.3-1 libpython3.8-dev_3.8.3-1 libpython3.8-minimal_3.8.3-1 libpython3.8-stdlib_3.8.3-1 libqhull-dev_2019.1-5 libqhull-r7deb1_2019.1-5 libqhull7deb1_2019.1-5 libqhullcpp7deb1_2019.1-5 libqt5concurrent5_5.12.5+dfsg-10+rpi1 libqt5core5a_5.12.5+dfsg-10+rpi1 libqt5dbus5_5.12.5+dfsg-10+rpi1 libqt5designer5_5.12.5-2 libqt5designercomponents5_5.12.5-2 libqt5gui5_5.12.5+dfsg-10+rpi1 libqt5help5_5.12.5-2 libqt5network5_5.12.5+dfsg-10+rpi1 libqt5opengl5_5.12.5+dfsg-10+rpi1 libqt5opengl5-dev_5.12.5+dfsg-10+rpi1 libqt5positioning5_5.12.5+dfsg-5 libqt5printsupport5_5.12.5+dfsg-10+rpi1 libqt5qml5_5.12.5-5 libqt5quick5_5.12.5-5 libqt5quickparticles5_5.12.5-5 libqt5quickshapes5_5.12.5-5 libqt5quicktest5_5.12.5-5 libqt5quickwidgets5_5.12.5-5 libqt5sensors5_5.12.5-2 libqt5sql5_5.12.5+dfsg-10+rpi1 libqt5sql5-sqlite_5.12.5+dfsg-10+rpi1 libqt5test5_5.12.5+dfsg-10+rpi1 libqt5webchannel5_5.12.5-2 libqt5webkit5_5.212.0~alpha4-1+rpi1 libqt5webkit5-dev_5.212.0~alpha4-1+rpi1 libqt5widgets5_5.12.5+dfsg-10+rpi1 libqt5x11extras5_5.12.5-1 libqt5xml5_5.12.5+dfsg-10+rpi1 librdmacm1_29.0-1 libreadline7_7.0-5 libreadline8_8.0-4 librhash0_1.3.9-1 librsvg2-2_2.48.3-1 librtmp1_2.4+20151223.gitfa8646d.1-2+b1 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.4.3-1+rpi1 libselinux1_3.0-1+b1 libsemanage-common_3.0-1 libsemanage1_3.0-1+b1 libsensors-config_1:3.6.0-2 libsensors5_1:3.6.0-2 libsepol1_3.0-1 libshine3_3.1.1-2+b1 libsigsegv2_2.12-2 libsm-dev_2:1.2.3-1 libsm6_2:1.2.3-1 libsmartcols1_2.35.1-2 libsnappy1v5_1.1.8-1 libsodium23_1.0.18-1 libsoxr0_0.1.3-4+rpi1 libspatialite-dev_4.3.0a-6+b3 libspatialite7_4.3.0a-6+b3 libspeex1_1.2~rc1.2-1.1 libsqlite3-0_3.31.1-5 libsqlite3-dev_3.31.1-5 libss2_1.45.6-1 libssh-gcrypt-4_0.9.4-1 libssh2-1_1.8.0-2.1 libssl1.1_1.1.1g-1 libstdc++-9-dev_9.3.0-11+rpi1 libstdc++6_10.1.0-1+rpi1 libsub-override-perl_0.09-2 libsuperlu-dev_5.2.1+dfsg1-4 libsuperlu5_5.2.1+dfsg1-4 libswresample-dev_7:4.2.2-1+b1 libswresample3_7:4.2.2-1+b1 libswscale-dev_7:4.2.2-1+b1 libswscale5_7:4.2.2-1+b1 libsymspg-dev_1.15.1-1 libsymspg1_1.15.1-1 libsystemd0_245.5-1+rpi1 libsz2_1.0.4-1 libtasn1-6_4.16.0-2 libtasn1-6-dev_4.16.0-2 libtcl8.6_8.6.10+dfsg-1 libthai-data_0.1.28-3 libthai0_0.1.28-3 libtheora-dev_1.1.1+dfsg.1-15 libtheora0_1.1.1+dfsg.1-15 libtiff-dev_4.1.0+git191117-2 libtiff5_4.1.0+git191117-2 libtiffxx5_4.1.0+git191117-2 libtinfo5_6.2-1 libtinfo6_6.2-1 libtk8.6_8.6.10-1 libtool_2.4.6-14 libtwolame0_0.4.0-2 libubsan1_10.1.0-1+rpi1 libuchardet0_0.0.6-3 libudev1_245.5-1+rpi1 libunbound8_1.10.0-1 libunistring2_0.9.10-2 liburiparser-dev_0.9.3-2 liburiparser1_0.9.3-2 libuuid1_2.35.1-5 libuv1_1.35.0-2 libva-drm2_2.7.1-1 libva-x11-2_2.7.1-1 libva2_2.7.1-1 libvdpau1_1.4-1 libvorbis0a_1.3.6-2 libvorbisenc2_1.3.6-2 libvorbisfile3_1.3.6-2 libvoro++1_0.4.6+dfsg1-3 libvpx6_1.8.2-1 libvtk7-dev_7.1.1+dfsg2-4 libvtk7-java_7.1.1+dfsg2-4 libvtk7-jni_7.1.1+dfsg2-4 libvtk7-qt-dev_7.1.1+dfsg2-4 libvtk7.1p_7.1.1+dfsg2-4 libvtk7.1p-qt_7.1.1+dfsg2-4 libvulkan-dev_1.2.135.0-3 libvulkan1_1.2.135.0-3 libwacom-common_1.3-2 libwacom2_1.3-2 libwavpack1_5.3.0-1 libwayland-client0_1.18.0-1 libwayland-server0_1.18.0-1 libwebp-dev_0.6.1-2 libwebp6_0.6.1-2 libwebpdemux2_0.6.1-2 libwebpmux3_0.6.1-2 libwoff1_1.0.2-1 libx11-6_2:1.6.9-2 libx11-data_2:1.6.9-2 libx11-dev_2:1.6.9-2 libx11-xcb1_2:1.6.9-2 libx264-155_2:0.155.2917+git0a84d98-2+rpi1 libx265-179_3.2.1-1 libxau-dev_1:1.0.8-1+b2 libxau6_1:1.0.8-1+b2 libxcb-dri2-0_1.14-2 libxcb-dri3-0_1.14-2 libxcb-glx0_1.14-2 libxcb-icccm4_0.4.1-1.1 libxcb-image0_0.4.0-1+b2 libxcb-keysyms1_0.4.0-1+b2 libxcb-present0_1.14-2 libxcb-randr0_1.14-2 libxcb-render-util0_0.3.9-1+b1 libxcb-render0_1.14-2 libxcb-shape0_1.14-2 libxcb-shm0_1.14-2 libxcb-sync1_1.14-2 libxcb-util0_0.3.8-3+b2 libxcb-xfixes0_1.14-2 libxcb-xinerama0_1.14-2 libxcb-xinput0_1.14-2 libxcb-xkb1_1.14-2 libxcb1_1.14-2 libxcb1-dev_1.14-2 libxdamage1_1:1.1.5-2 libxdmcp-dev_1:1.1.2-3 libxdmcp6_1:1.1.2-3 libxerces-c-dev_3.2.3+debian-1 libxerces-c3.2_3.2.3+debian-1 libxext-dev_2:1.3.3-1+b2 libxext6_2:1.3.3-1+b2 libxfixes3_1:5.0.3-2 libxft-dev_2.3.2-2 libxft2_2.3.2-2 libxkbcommon-x11-0_0.10.0-1 libxkbcommon0_0.10.0-1 libxml2_2.9.10+dfsg-5 libxml2-dev_2.9.10+dfsg-5 libxnvctrl0_440.82-1 libxrender-dev_1:0.9.10-1 libxrender1_1:0.9.10-1 libxshmfence1_1.3-1 libxslt1.1_1.1.34-4 libxss-dev_1:1.2.3-1 libxss1_1:1.2.3-1 libxt-dev_1:1.1.5-1+b3 libxt6_1:1.1.5-1+b3 libxvidcore4_2:1.3.7-1 libxxf86vm1_1:1.1.4-1+b2 libz3-4_4.8.7-4 libzstd-dev_1.4.4+dfsg-3+rpi1 libzstd1_1.4.4+dfsg-3+rpi1 libzvbi-common_0.2.35-18 libzvbi0_0.2.35-18 linux-libc-dev_5.2.17-1+rpi1+b2 login_1:4.8.1-1 logsave_1.45.6-1 lsb-base_11.1.0+rpi1 m4_1.4.18-4 make_4.2.1-2 man-db_2.9.1-1 mariadb-common_1:10.3.22-1 mawk_1.3.4.20200120-2 mime-support_3.64 mount_2.35.1-2 mpi-default-bin_1.13 mpi-default-dev_1.13 mysql-common_5.8+1.0.5 ncurses-base_6.2-1 ncurses-bin_6.2-1 netbase_6.1 nettle-dev_3.5.1+really3.5.1-2 node-jquery_3.5.1+dfsg-3 ocl-icd-libopencl1_2.2.12-4 ocl-icd-opencl-dev_2.2.12-4 odbcinst_2.3.6-0.1+b1 odbcinst1debian2_2.3.6-0.1+b1 opencl-c-headers_3.0~2020.05.12-g5cc337c-1 opencl-clhpp-headers_2.2.0~~2.0.11+git9-g0192662-1 openmpi-bin_4.0.3-6+rpi1 openmpi-common_4.0.3-6+rpi1 openssh-client_1:8.2p1-4 openssl_1.1.1g-1 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.30.0-10 perl-base_5.30.0-10 perl-modules-5.30_5.30.0-10 pinentry-curses_1.1.0-4 pkg-config_0.29.2-1 po-debconf_1.0.21 procps_2:3.3.16-4 proj-data_7.0.1-1 python-babel-localedata_2.8.0+dfsg.1-3 python3_3.8.2-3 python3-alabaster_0.7.8-1.1 python3-all_3.8.2-3 python3-all-dev_3.8.2-3 python3-attr_19.3.0-4 python3-autobahn_17.10.1+dfsg1-6+rvt python3-automat_0.8.0-2 python3-babel_2.8.0+dfsg.1-3 python3-cbor_1.0.0-1.1+b1 python3-certifi_2020.4.5.1-1 python3-cffi-backend_1.14.0-2 python3-chardet_3.0.4-7 python3-constantly_15.1.0-2 python3-cryptography_2.8-4 python3-dev_3.8.2-3 python3-distutils_3.8.2-2 python3-docutils_0.16+dfsg-2 python3-hamcrest_1.9.0-3 python3-hyperlink_19.0.0-2 python3-idna_2.9-1 python3-imagesize_1.2.0-2 python3-incremental_16.10.1-3.2 python3-jinja2_2.10.1-2 python3-lib2to3_3.8.2-2 python3-lz4_3.0.2+dfsg-1 python3-markupsafe_1.1.1-1 python3-minimal_3.8.2-3 python3-mpi4py_3.0.3-4 python3-nacl_1.3.0-5 python3-openssl_19.1.0-2 python3-packaging_20.3-1.2 python3-pkg-resources_46.1.3-1 python3-pyasn1_0.4.2-4 python3-pyasn1-modules_0.2.1-1 python3-pygments_2.3.1+dfsg-3 python3-pyparsing_2.4.7-1 python3-pyqrcode_1.2.1-4 python3-requests_2.23.0+dfsg-2 python3-roman_2.0.0-4 python3-service-identity_18.1.0-6 python3-six_1.14.0-3 python3-snappy_0.5.3-1.1+b1 python3-sphinx_2.4.3-2 python3-trie_0.2+ds-2 python3-twisted_18.9.0-11 python3-twisted-bin_18.9.0-11 python3-txaio_20.4.1-2 python3-tz_2019.3-2 python3-u-msgpack_2.3.0-2 python3-ubjson_0.14.0-2+b2 python3-urllib3_1.25.9-1 python3-vtk7_7.1.1+dfsg2-4 python3-wsaccel_0.6.2-2+rvt python3-zope.interface_4.7.1-2 python3.8_3.8.3-1 python3.8-dev_3.8.3-1 python3.8-minimal_3.8.3-1 qdoc-qt5_5.12.5-2 qhelpgenerator-qt5_5.12.5-2 qt5-assistant_5.12.5-2 qt5-qmake_5.12.5+dfsg-10+rpi1 qt5-qmake-bin_5.12.5+dfsg-10+rpi1 qt5-qmltooling-plugins_5.12.5-5 qtattributionsscanner-qt5_5.12.5-2 qtbase5-dev_5.12.5+dfsg-10+rpi1 qtbase5-dev-tools_5.12.5+dfsg-10+rpi1 qtchooser_66-2 qtdeclarative5-dev_5.12.5-5 qtdeclarative5-dev-tools_5.12.5-5 qttools5-dev_5.12.5-2 qttools5-dev-tools_5.12.5-2 qttools5-private-dev_5.12.5-2 raspbian-archive-keyring_20120528.2 readline-common_8.0-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-lammps-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sgml-base_1.30 shared-mime-info_1.15-1 sphinx-common_2.4.3-2 sysvinit-utils_2.96-3 tar_1.30+dfsg-7 tcl_8.6.9+1 tcl-dev_8.6.9+1 tcl-vtk7_7.1.1+dfsg2-4 tcl8.6_8.6.10+dfsg-1 tcl8.6-dev_8.6.10+dfsg-1 tk_8.6.9+1 tk-dev_8.6.9+1 tk8.6_8.6.10-1 tk8.6-dev_8.6.10-1 tzdata_2020a-1 ucf_3.0038+nmu1 unixodbc-dev_2.3.6-0.1+b1 util-linux_2.35.1-2 uuid-dev_2.35.1-5 voro++-dev_0.4.6+dfsg1-3 vtk7_7.1.1+dfsg2-4 x11-common_1:7.7+20 x11proto-core-dev_2020.1-1 x11proto-dev_2020.1-1 x11proto-scrnsaver-dev_2020.1-1 x11proto-xext-dev_2020.1-1 xkb-data_2.29-2 xml-core_0.18+nmu1 xorg-sgml-doctools_1:1.11-1 xtrans-dev_1.4.0-1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Sat May 16 19:00:49 2020 UTC
gpgv: using RSA key BBBD45EA818AB86FF67E7285D3E17383CFA7FF06
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./lammps_20200303+dfsg1-3.dsc
dpkg-source: info: extracting lammps in /<<BUILDDIR>>/lammps-20200303+dfsg1
dpkg-source: info: unpacking lammps_20200303+dfsg1.orig.tar.xz
dpkg-source: info: unpacking lammps_20200303+dfsg1-3.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying 10_enable_spglib.patch
dpkg-source: info: applying 20_set_potentials_path.patch
dpkg-source: info: applying build_docs.patch
dpkg-source: info: applying python_lib_soname.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-1054a33b-fe2a-4533-8772-16ece5dcd7dd
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package lammps
dpkg-buildpackage: info: source version 20200303+dfsg1-3
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean --with python3 --sourcedirectory=cmake --builddirectory=/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<BUILDDIR>>/lammps-20200303+dfsg1'
dh_auto_clean
rm -rf /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build
make[1]: Leaving directory '/<<BUILDDIR>>/lammps-20200303+dfsg1'
dh_autoreconf_clean -O--sourcedirectory=cmake -O--builddirectory=/<<BUILDDIR>>/lammps-20200303\+dfsg1/debian/build
dh_clean -O--sourcedirectory=cmake -O--builddirectory=/<<BUILDDIR>>/lammps-20200303\+dfsg1/debian/build
debian/rules build-arch
dh build-arch --with python3 --sourcedirectory=cmake --builddirectory=/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build
dh_update_autotools_config -a -O--sourcedirectory=cmake -O--builddirectory=/<<BUILDDIR>>/lammps-20200303\+dfsg1/debian/build
dh_autoreconf -a -O--sourcedirectory=cmake -O--builddirectory=/<<BUILDDIR>>/lammps-20200303\+dfsg1/debian/build
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<BUILDDIR>>/lammps-20200303+dfsg1'
dh_auto_configure -- \
-DBUILD_LIB=ON -DBUILD_SHARED_LIBS=ON \
-DCMAKE_SKIP_INSTALL_RPATH=TRUE \
-DPKG_ASPHERE=ON \
-DPKG_BODY=ON \
-DPKG_CLASS2=ON \
-DPKG_COLLOID=ON \
-DPKG_COMPRESS=ON \
-DPKG_CORESHELL=ON \
-DPKG_DIPOLE=ON \
-DPKG_GPU=ON \
-DPKG_GRANULAR=ON \
-DPKG_KIM=ON \
-DPKG_KSPACE=ON \
-DPKG_MANYBODY=ON \
-DPKG_MC=ON \
-DPKG_MISC=ON \
-DPKG_MOLECULE=ON \
-DPKG_MPIIO=ON \
-DPKG_OPT=ON \
-DPKG_PERI=ON \
-DPKG_POEMS=ON \
-DPKG_PYTHON=ON \
-DPKG_QEQ=ON \
-DPKG_REPLICA=ON \
-DPKG_RIGID=ON \
-DPKG_SHOCK=ON \
-DPKG_SNAP=ON \
-DPKG_SRD=ON \
-DPKG_USER-ATC=ON \
-DPKG_USER-AWPMD=ON \
-DPKG_USER-BOCS=ON \
-DPKG_USER-CGDNA=ON \
-DPKG_USER-CGSDK=ON \
-DPKG_USER-DIFFRACTION=ON \
-DPKG_USER-DPD=ON \
-DPKG_USER-DRUDE=ON \
-DPKG_USER-EFF=ON \
-DPKG_USER-FEP=ON \
-DPKG_USER-H5MD=ON \
-DPKG_USER-LB=ON \
-DPKG_USER-MANIFOLD=ON \
-DPKG_USER-MEAMC=ON \
-DPKG_USER-MESO=ON \
-DPKG_USER-MGPT=ON \
-DPKG_USER-MISC=ON \
-DPKG_USER-MOFFF=ON \
-DPKG_USER-MOLFILE=ON \
-DPKG_USER-NETCDF=ON \
-DPKG_USER-OMP=ON \
-DPKG_USER-PHONON=ON \
-DPKG_USER-QTB=ON \
-DPKG_USER-REAXC=OFF \
-DPKG_USER-SMD=ON \
-DPKG_USER-SMTBQ=ON \
-DPKG_USER-SPH=ON \
-DPKG_USER-TALLY=ON \
-DPKG_USER-UEF=ON \
-DPKG_USER-VTK=ON \
-DPKG_VORONOI=ON
cd debian/build && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_AUTOGEN_VERBOSE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf -DBUILD_LIB=ON -DBUILD_SHARED_LIBS=ON -DCMAKE_SKIP_INSTALL_RPATH=TRUE -DPKG_ASPHERE=ON -DPKG_BODY=ON -DPKG_CLASS2=ON -DPKG_COLLOID=ON -DPKG_COMPRESS=ON -DPKG_CORESHELL=ON -DPKG_DIPOLE=ON -DPKG_GPU=ON -DPKG_GRANULAR=ON -DPKG_KIM=ON -DPKG_KSPACE=ON -DPKG_MANYBODY=ON -DPKG_MC=ON -DPKG_MISC=ON -DPKG_MOLECULE=ON -DPKG_MPIIO=ON -DPKG_OPT=ON -DPKG_PERI=ON -DPKG_POEMS=ON -DPKG_PYTHON=ON -DPKG_QEQ=ON -DPKG_REPLICA=ON -DPKG_RIGID=ON -DPKG_SHOCK=ON -DPKG_SNAP=ON -DPKG_SRD=ON -DPKG_USER-ATC=ON -DPKG_USER-AWPMD=ON -DPKG_USER-BOCS=ON -DPKG_USER-CGDNA=ON -DPKG_USER-CGSDK=ON -DPKG_USER-DIFFRACTION=ON -DPKG_USER-DPD=ON -DPKG_USER-DRUDE=ON -DPKG_USER-EFF=ON -DPKG_USER-FEP=ON -DPKG_USER-H5MD=ON -DPKG_USER-LB=ON -DPKG_USER-MANIFOLD=ON -DPKG_USER-MEAMC=ON -DPKG_USER-MESO=ON -DPKG_USER-MGPT=ON -DPKG_USER-MISC=ON -DPKG_USER-MOFFF=ON -DPKG_USER-MOLFILE=ON -DPKG_USER-NETCDF=ON -DPKG_USER-OMP=ON -DPKG_USER-PHONON=ON -DPKG_USER-QTB=ON -DPKG_USER-REAXC=OFF -DPKG_USER-SMD=ON -DPKG_USER-SMTBQ=ON -DPKG_USER-SPH=ON -DPKG_USER-TALLY=ON -DPKG_USER-UEF=ON -DPKG_USER-VTK=ON -DPKG_VORONOI=ON ../../cmake
-- The CXX compiler identification is GNU 9.3.0
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Could NOT find Git (missing: GIT_EXECUTABLE)
-- Running check for auto-generated files from make-based build system
-- Found MPI_CXX: /usr/lib/arm-linux-gnueabihf/openmpi/lib/libmpi_cxx.so (found version "3.1")
-- Found MPI: TRUE (found version "3.1")
-- The C compiler identification is GNU 9.3.0
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Looking for sgemm_
-- Looking for sgemm_ - not found
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE
-- Looking for sgemm_
-- Looking for sgemm_ - found
-- Found BLAS: /usr/lib/arm-linux-gnueabihf/libblas.so
-- Looking for cheev_
-- Looking for cheev_ - not found
-- Looking for cheev_
-- Looking for cheev_ - found
-- A library with LAPACK API found.
-- Found JPEG: /usr/lib/arm-linux-gnueabihf/libjpeg.so (found version "62")
-- Found PNG: /usr/lib/arm-linux-gnueabihf/libpng.so (found version "1.6.37")
-- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.2.11")
-- Found GZIP: /bin/gzip
-- Could NOT find FFMPEG (missing: FFMPEG_EXECUTABLE)
-- Found PkgConfig: /usr/bin/pkg-config (found version "0.29.2")
-- Checking for module 'fftw3'
-- Found fftw3, version 3.3.8
-- Found FFTW3: /usr/lib/arm-linux-gnueabihf/libfftw3.so
-- Found PythonLibs: /usr/lib/arm-linux-gnueabihf/libpython3.8.so (found version "3.8.3")
-- Found VORO: /usr/lib/arm-linux-gnueabihf/libvoro++.so
-- Found NetCDF: /usr/lib/arm-linux-gnueabihf/libnetcdf.so
-- Trying to find PNetCDF using LD_LIBRARY_PATH (we're desperate)...
-- Could NOT find PNetCDF (missing: PNETCDF_LIBRARIES PNETCDF_INCLUDES)
-- The imported target "vtkParseOGLExt" references the file
"/usr/bin/vtkParseOGLExt-7.1"
but this file does not exist. Possible reasons include:
* The file was deleted, renamed, or moved to another location.
* An install or uninstall procedure did not complete successfully.
* The installation package was faulty and contained
"/usr/lib/cmake/vtk-7.1/VTKTargets.cmake"
but not all the files it references.
-- The imported target "vtkRenderingPythonTkWidgets" references the file
"/usr/lib/arm-linux-gnueabihf/libvtkRenderingPythonTkWidgets.so"
but this file does not exist. Possible reasons include:
* The file was deleted, renamed, or moved to another location.
* An install or uninstall procedure did not complete successfully.
* The installation package was faulty and contained
"/usr/lib/cmake/vtk-7.1/VTKTargets.cmake"
but not all the files it references.
-- The imported target "vtk" references the file
"/usr/bin/vtk"
but this file does not exist. Possible reasons include:
* The file was deleted, renamed, or moved to another location.
* An install or uninstall procedure did not complete successfully.
* The installation package was faulty and contained
"/usr/lib/cmake/vtk-7.1/VTKTargets.cmake"
but not all the files it references.
-- The imported target "pvtk" references the file
"/usr/bin/pvtk"
but this file does not exist. Possible reasons include:
* The file was deleted, renamed, or moved to another location.
* An install or uninstall procedure did not complete successfully.
* The installation package was faulty and contained
"/usr/lib/cmake/vtk-7.1/VTKTargets.cmake"
but not all the files it references.
-- Found CURL: /usr/lib/arm-linux-gnueabihf/libcurl.so (found version "7.68.0")
-- Checking for module 'libkim-api>=2.0'
-- Found libkim-api, version 2.1.3-git
-- Found KIM-API: kim-api (found suitable version "2.1.3", minimum required is "2.1")
-- Looking for C++ include cmath
-- Looking for C++ include cmath - found
-- HDF5: Using hdf5 compiler wrapper to determine C configuration
-- Found HDF5: /usr/lib/arm-linux-gnueabihf/hdf5/serial/libhdf5.so;/usr/lib/arm-linux-gnueabihf/libpthread.so;/usr/lib/arm-linux-gnueabihf/libsz.so;/usr/lib/arm-linux-gnueabihf/libz.so;/usr/lib/arm-linux-gnueabihf/libdl.so;/usr/lib/arm-linux-gnueabihf/libm.so (found version "1.10.6")
-- Looking for CL_VERSION_2_2
-- Looking for CL_VERSION_2_2 - found
-- Found OpenCL: /usr/lib/arm-linux-gnueabihf/libOpenCL.so (found version "2.2")
Creating /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu/atom_cl.h...
Creating /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu/beck_cl.h...
Creating /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu/born_cl.h...
Creating /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu/born_coul_long_cl.h...
Creating /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu/born_coul_long_cs_cl.h...
Creating /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu/born_coul_wolf_cl.h...
Creating /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu/born_coul_wolf_cs_cl.h...
Creating /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu/buck_cl.h...
Creating /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu/buck_coul_cl.h...
Creating /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu/buck_coul_long_cl.h...
Creating /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu/charmm_long_cl.h...
Creating /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu/colloid_cl.h...
Creating /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu/coul_cl.h...
Creating /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu/coul_debye_cl.h...
Creating /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu/coul_dsf_cl.h...
Creating /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu/coul_long_cl.h...
Creating /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu/coul_long_cs_cl.h...
Creating /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu/device_cl.h...
Creating /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu/dipole_lj_cl.h...
Creating /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu/dipole_lj_sf_cl.h...
Creating /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu/dipole_long_lj_cl.h...
Creating /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu/dpd_cl.h...
Creating /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu/eam_cl.h...
Creating /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu/ellipsoid_nbor_cl.h...
Creating /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu/gauss_cl.h...
Creating /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu/lj_cl.h...
Creating /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu/lj96_cl.h...
Creating /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu/lj_class2_long_cl.h...
Creating /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu/lj_coul_cl.h...
Creating /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu/lj_coul_debye_cl.h...
Creating /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu/lj_coul_long_cl.h...
Creating /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu/lj_coul_msm_cl.h...
Creating /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu/lj_cubic_cl.h...
Creating /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu/lj_dsf_cl.h...
Creating /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu/lj_expand_cl.h...
Creating /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu/lj_expand_coul_long_cl.h...
Creating /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu/lj_gromacs_cl.h...
Creating /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu/lj_sdk_cl.h...
Creating /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu/lj_sdk_long_cl.h...
Creating /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu/lj_tip4p_long_cl.h...
Creating /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu/mie_cl.h...
Creating /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu/morse_cl.h...
Creating /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu/neighbor_cpu_cl.h...
Creating /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu/neighbor_gpu_cl.h...
Creating /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu/pppm_cl.h...
Creating /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu/soft_cl.h...
Creating /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu/sw_cl.h...
Creating /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu/table_cl.h...
Creating /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu/ufm_cl.h...
Creating /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu/vashishta_cl.h...
Creating /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu/yukawa_cl.h...
Creating /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu/yukawa_colloid_cl.h...
Creating /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu/zbl_cl.h...
Creating /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu/gayberne_cl.h...
Creating /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu/gayberne_lj_cl.h...
Creating /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu/re_squared_cl.h...
Creating /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu/re_squared_lj_cl.h...
Creating /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu/tersoff_cl.h...
Creating /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu/tersoff_zbl_cl.h...
Creating /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu/tersoff_mod_cl.h...
-- Generating style_angle.h...
-- Generating style_atom.h...
-- Generating style_body.h...
-- Generating style_bond.h...
-- Generating style_command.h...
-- Generating style_compute.h...
-- Generating style_dihedral.h...
-- Generating style_dump.h...
-- Generating style_fix.h...
-- Generating style_improper.h...
-- Generating style_integrate.h...
-- Generating style_kspace.h...
-- Generating style_minimize.h...
-- Generating style_nbin.h...
-- Generating style_npair.h...
-- Generating style_nstencil.h...
-- Generating style_ntopo.h...
-- Generating style_pair.h...
-- Generating style_reader.h...
-- Generating style_region.h...
-- Generating packages_angle.h...
-- Generating packages_atom.h...
-- Generating packages_body.h...
-- Generating packages_bond.h...
-- Generating packages_command.h...
-- Generating packages_compute.h...
-- Generating packages_dihedral.h...
-- Generating packages_dump.h...
-- Generating packages_fix.h...
-- Generating packages_improper.h...
-- Generating packages_integrate.h...
-- Generating packages_kspace.h...
-- Generating packages_minimize.h...
-- Generating packages_nbin.h...
-- Generating packages_npair.h...
-- Generating packages_nstencil.h...
-- Generating packages_ntopo.h...
-- Generating packages_pair.h...
-- Generating packages_reader.h...
-- Generating packages_region.h...
-- Generating lmpinstalledpkgs.h...
-- Found PythonInterp: /usr/bin/python3.8 (found version "3.8.3")
-- Building package: ASPHERE
-- Building package: BODY
-- Building package: CLASS2
-- Building package: COLLOID
-- Building package: COMPRESS
-- Building package: CORESHELL
-- Building package: DIPOLE
-- Building package: GRANULAR
-- Building package: KSPACE
-- Building package: MANYBODY
-- Building package: MC
-- Building package: MISC
-- Building package: MOLECULE
-- Building package: PERI
-- Building package: POEMS
-- Building package: QEQ
-- Building package: REPLICA
-- Building package: RIGID
-- Building package: SHOCK
-- Building package: SNAP
-- Building package: SRD
-- Building package: KIM
-- Building package: PYTHON
-- Building package: MPIIO
-- Building package: VORONOI
-- Building package: USER-ATC
-- Building package: USER-AWPMD
-- Building package: USER-BOCS
-- Building package: USER-CGDNA
-- Building package: USER-MESO
-- Building package: USER-CGSDK
-- Building package: USER-DIFFRACTION
-- Building package: USER-DPD
-- Building package: USER-DRUDE
-- Building package: USER-EFF
-- Building package: USER-FEP
-- Building package: USER-H5MD
-- Building package: USER-LB
-- Building package: USER-MANIFOLD
-- Building package: USER-MEAMC
-- Building package: USER-MGPT
-- Building package: USER-MISC
-- Building package: USER-MOFFF
-- Building package: USER-MOLFILE
-- Building package: USER-NETCDF
-- Building package: USER-PHONON
-- Building package: USER-QTB
-- Building package: USER-SMD
-- Building package: USER-SMTBQ
-- Building package: USER-SPH
-- Building package: USER-TALLY
-- Building package: USER-UEF
-- Building package: USER-VTK
-- Building package: USER-OMP
-- Building package: OPT
-- Building package: GPU
-- The following tools and libraries have been found and configured:
* MPI
* LAPACK
* Threads
* BLAS
* JPEG
* PNG
* FFTW3
* PythonLibs
* VORO
* NetCDF
* Eigen3
* Qt5Core (required version >= 5.12.5)
* Qt5Gui (required version >= 5.12.5)
* Qt5Sql
* Qt5Widgets
* Qt5
* VTK
* CURL
* PkgConfig
* KIM-API (required version >= 2.1)
* ZLIB
* HDF5
* OpenCL
* PythonInterp
-- <<< Build configuration >>>
Build type None
Install path /usr
Compilers and Flags:
C++ Compiler /usr/bin/c++
Type GNU
Version 9.3.0
C++ Flags -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2
Defines LAMMPS_SMALLBIG;LAMMPS_MEMALIGN=64;LAMMPS_JPEG;LAMMPS_PNG;LAMMPS_GZIP;FFT_FFTW3;FFT_FFTW_THREADS;LMP_PYTHON;LMP_HAS_NETCDF;NC_64BIT_DATA=0x0020;vtkDomainsChemistry_AUTOINIT=1(vtkDomainsChemistryOpenGL2);vtkFiltersCore_AUTOINIT=1(vtkFiltersParallelDIY2);vtkFiltersFlowPaths_AUTOINIT=1(vtkFiltersParallelFlowPaths);vtkIOExodus_AUTOINIT=1(vtkIOParallelExodus);vtkIOGeometry_AUTOINIT=1(vtkIOMPIParallel);vtkIOImage_AUTOINIT=1(vtkIOMPIImage);vtkIOParallel_AUTOINIT=1(vtkIOMPIParallel);vtkIOSQL_AUTOINIT=2(vtkIOMySQL,vtkIOPostgreSQL);vtkRenderingContext2D_AUTOINIT=1(vtkRenderingContextOpenGL2);vtkRenderingCore_AUTOINIT=3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2);vtkRenderingFreeType_AUTOINIT=2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib);vtkRenderingLICOpenGL2_AUTOINIT=1(vtkRenderingParallelLIC);vtkRenderingOpenGL2_AUTOINIT=1(vtkRenderingGL2PSOpenGL2);vtkRenderingVolume_AUTOINIT=1(vtkRenderingVolumeOpenGL2);LAMMPS_VTK;LMP_KIM_CURL;LMP_MPIIO;LMP_USER_OMP
-- C compiler /usr/bin/cc
Type GNU
Version 9.3.0
C Flags -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2
-- Linker flags:
Executable -Wl,-z,relro
-- Shared library flags: -Wl,-z,relro
-- Link libraries: /usr/lib/arm-linux-gnueabihf/openmpi/lib/libmpi_cxx.so;/usr/lib/arm-linux-gnueabihf/openmpi/lib/libmpi.so;/usr/lib/arm-linux-gnueabihf/libjpeg.so;/usr/lib/arm-linux-gnueabihf/libpng.so;/usr/lib/arm-linux-gnueabihf/libz.so;/usr/lib/arm-linux-gnueabihf/libfftw3.so;/usr/lib/arm-linux-gnueabihf/libfftw3_omp.so;/usr/lib/arm-linux-gnueabihf/libpython3.8.so;/usr/lib/arm-linux-gnueabihf/libvoro++.so;molfile;/usr/lib/arm-linux-gnueabihf/libnetcdf.so;vtkChartsCore;vtkCommonColor;vtkCommonCore;vtksys;vtkCommonDataModel;vtkCommonMath;vtkCommonMisc;vtkCommonSystem;vtkCommonTransforms;vtkCommonExecutionModel;vtkFiltersGeneral;vtkCommonComputationalGeometry;vtkFiltersCore;vtkInfovisCore;vtkFiltersExtraction;vtkFiltersStatistics;vtkImagingFourier;vtkImagingCore;vtkalglib;vtkRenderingContext2D;vtkRenderingCore;vtkFiltersGeometry;vtkFiltersSources;vtkRenderingFreeType;/usr/lib/arm-linux-gnueabihf/libfreetype.so;vtkDICOMParser;vtkDomainsChemistry;vtkIOLegacy;vtkIOCore;vtkIOXMLParser;/usr/lib/arm-linux-gnueabihf/libexpat.so;vtkDomainsChemistryOpenGL2;vtkRenderingOpenGL2;vtkIOImage;vtkmetaio;/usr/lib/arm-linux-gnueabihf/libtiff.so;vtkFiltersAMR;vtkIOXML;vtkParallelCore;vtkFiltersFlowPaths;vtkFiltersGeneric;vtkFiltersHybrid;vtkImagingSources;vtkFiltersHyperTree;vtkFiltersImaging;vtkImagingGeneral;vtkFiltersModeling;vtkFiltersParallel;vtkFiltersParallelDIY2;vtkParallelMPI;vtkFiltersParallelFlowPaths;vtkFiltersParallelGeometry;vtkFiltersParallelImaging;vtkFiltersParallelMPI;vtkFiltersParallelStatistics;vtkFiltersPoints;vtkFiltersProgrammable;vtkFiltersPython;vtkWrappingPythonCore;vtkWrappingTools;vtkFiltersReebGraph;vtkFiltersSMP;vtkFiltersSelection;vtkFiltersTexture;vtkFiltersVerdict;verdict;vtkGUISupportQt;vtkInteractionStyle;vtkGUISupportQtSQL;vtkIOSQL;sqlite3;vtkGeovisCore;vtkInfovisLayout;vtkImagingHybrid;vtkInteractionWidgets;vtkImagingColor;vtkRenderingAnnotation;vtkRenderingVolume;vtkViewsCore;vtkproj4;vtkIOAMR;/usr/lib/arm-linux-gnueabihf/hdf5/openmpi/libhdf5.so;/usr/lib/arm-linux-gnueabihf/libsz.so;/usr/lib/arm-linux-gnueabihf/libdl.so;/usr/lib/arm-linux-gnueabihf/libm.so;/usr/lib/arm-linux-gnueabihf/hdf5/openmpi/libhdf5_hl.so;vtkIOEnSight;vtkIOExodus;vtkexoIIc;/usr/lib/arm-linux-gnueabihf/libnetcdf_c++.so;vtkIOExport;vtkRenderingGL2PSOpenGL2;/usr/lib/arm-linux-gnueabihf/libgl2ps.so;vtkIOFFMPEG;vtkIOMovie;/usr/lib/arm-linux-gnueabihf/libtheoraenc.so;/usr/lib/arm-linux-gnueabihf/libtheoradec.so;/usr/lib/arm-linux-gnueabihf/libogg.so;vtkIOGDAL;vtkIOGeoJSON;/usr/lib/arm-linux-gnueabihf/libjsoncpp.so;vtkIOGeometry;vtkIOImport;vtkIOInfovis;/usr/lib/arm-linux-gnueabihf/libxml2.so;vtkIOLSDyna;vtkIOMINC;vtkIOMPIImage;vtkIOMPIParallel;vtkIOParallel;vtkIONetCDF;vtkIOMySQL;vtkIOODBC;vtkIOPLY;vtkIOParallelExodus;vtkIOParallelLSDyna;vtkIOParallelNetCDF;vtkIOParallelXML;vtkIOPostgreSQL;vtkIOTecplotTable;vtkIOVPIC;VPIC;vtkIOVideo;vtkIOXdmf2;vtkxdmf2;vtkImagingMath;vtkImagingMorphological;vtkImagingStatistics;vtkImagingStencil;vtkInfovisBoostGraphAlgorithms;vtkInteractionImage;vtkLocalExample;vtkParallelMPI4Py;vtkPythonInterpreter;vtkRenderingContextOpenGL2;vtkRenderingExternal;vtkRenderingFreeTypeFontConfig;vtkRenderingImage;vtkRenderingLICOpenGL2;vtkRenderingLOD;vtkRenderingLabel;vtkRenderingMatplotlib;vtkRenderingParallel;vtkRenderingParallelLIC;vtkRenderingSceneGraph;vtkRenderingVolumeAMR;vtkRenderingVolumeOpenGL2;vtkTestingGenericBridge;vtkTestingIOSQL;vtkTestingRendering;vtkViewsContext2D;vtkViewsGeovis;vtkViewsInfovis;vtkWrappingJava;/usr/lib/arm-linux-gnueabihf/libcurl.so;-Wl,-rpath,/usr/lib/arm-linux-gnueabihf;-lkim-api;m;poems;atc;awpmd;h5md;gpu
-- Using MPI with headers in /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi;/usr/lib/arm-linux-gnueabihf/openmpi/include and /usr/lib/arm-linux-gnueabihf/openmpi/lib/libmpi_cxx.so;/usr/lib/arm-linux-gnueabihf/openmpi/lib/libmpi.so
-- GPU API: OPENCL
-- OpenCL parameter tuning: GENERIC
-- GPU precision: MIXED
-- Using FFTW3 as primary FFT library
-- Using double precision FFTs
-- Using threaded FFTs
-- Configuring done
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_AUTOGEN_VERBOSE
CMAKE_EXPORT_NO_PACKAGE_REGISTRY
-- Build files have been written to: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build
make[1]: Leaving directory '/<<BUILDDIR>>/lammps-20200303+dfsg1'
dh_auto_build -a -O--sourcedirectory=cmake -O--builddirectory=/<<BUILDDIR>>/lammps-20200303\+dfsg1/debian/build
cd debian/build && make -j4 "INSTALL=install --strip-program=true"
make[1]: Entering directory '/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build'
/usr/bin/cmake -S/<<BUILDDIR>>/lammps-20200303+dfsg1/cmake -B/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/CMakeFiles /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[2]: Entering directory '/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build'
make -f CMakeFiles/poems.dir/build.make CMakeFiles/poems.dir/depend
make -f CMakeFiles/atc.dir/build.make CMakeFiles/atc.dir/depend
make -f CMakeFiles/h5md.dir/build.make CMakeFiles/h5md.dir/depend
make -f CMakeFiles/awpmd.dir/build.make CMakeFiles/awpmd.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build'
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make[3]: Leaving directory '/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build'
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[ 1%] Building CXX object CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems/body23joint.cpp.o
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[ 1%] Building CXX object CMakeFiles/awpmd.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/systems/interact/TCP/wpmd.cpp.o
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[ 1%] Building CXX object CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems/colmatmap.cpp.o
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[ 1%] Building CXX object CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems/colmatrix.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems/colmatrix.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems/colmatrix.cpp
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Scanning dependencies of target atc
make[3]: Leaving directory '/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build'
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[ 1%] Building CXX object CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems/fastmatrixops.cpp.o
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[ 1%] Building CXX object CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems/fixedpoint.cpp.o
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[ 1%] Building CXX object CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems/freebodyjoint.cpp.o
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[ 1%] Building CXX object CMakeFiles/awpmd.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/systems/interact/TCP/wpmd_split.cpp.o
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[ 1%] Building CXX object CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems/inertialframe.cpp.o
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[ 2%] Building CXX object CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems/joint.cpp.o
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[ 2%] Building CXX object CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems/mat3x3.cpp.o
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[ 2%] Building CXX object CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems/mat4x4.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems/mat4x4.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems/mat4x4.cpp
[ 2%] Building CXX object CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems/mat6x6.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems/mat6x6.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems/mat6x6.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/systems/interact/TCP/wpmd.h:145,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/systems/interact/TCP/wpmd_split.h:65,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/systems/interact/TCP/wpmd_split.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Vector_Nt<double, 2>&}; _Tp = Vector_Nt<double, 2>; _Alloc = std::allocator<Vector_Nt<double, 2> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<Vector_Nt<double, 2> >::iterator' {aka '__gnu_cxx::__normal_iterator<Vector_Nt<double, 2>*, std::vector<Vector_Nt<double, 2> > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
[ 2%] Building CXX object CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems/matrix.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems/matrix.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems/matrix.cpp
[ 2%] Building CXX object CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems/matrixfun.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems/matrixfun.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems/matrixfun.cpp
[ 2%] Building CXX object CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems/mixedjoint.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems/mixedjoint.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems/mixedjoint.cpp
make -f CMakeFiles/gpu.dir/build.make CMakeFiles/gpu.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build'
cd /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/lammps-20200303+dfsg1/cmake /<<BUILDDIR>>/lammps-20200303+dfsg1/cmake /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/CMakeFiles/gpu.dir/DependInfo.cmake --color=
[ 2%] Building CXX object CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems/norm.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems/norm.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems/norm.cpp
[ 2%] Building CXX object CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems/onbody.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems/onbody.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems/onbody.cpp
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {WavePacket}; _Tp = WavePacket; _Alloc = std::allocator<WavePacket>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<WavePacket>::iterator' {aka '__gnu_cxx::__normal_iterator<WavePacket*, std::vector<WavePacket> >'} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In member function 'int AWPMD_split::add_split(Vector_3&, Vector_3&, double&, double&, Vector_2&, double, double, int)':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<WavePacket*, std::vector<WavePacket> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/systems/interact/TCP/wpmd.h:145,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/systems/interact/TCP/wpmd_split.h:65,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/systems/interact/TCP/wpmd_split.cpp:1:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Vector_Nt<double, 2>*, std::vector<Vector_Nt<double, 2> > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[ 2%] Building CXX object CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems/onfunctions.cpp.o
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[ 2%] Building CXX object CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems/onsolver.cpp.o
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[ 2%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_answer.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_answer.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_answer.cpp
[ 2%] Building CXX object CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems/particle.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems/particle.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems/particle.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TypeDefs.h:5,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_Method.h:5,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_Coupling.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_Coupling.cpp:2:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD<double>}; _Tp = ATC_matrix::TRI_COORD<double>; _Alloc = std::allocator<ATC_matrix::TRI_COORD<double> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > >::iterator' {aka '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ATC_matrix::TRI_COORD<double>}; _Tp = ATC_matrix::TRI_COORD<double>; _Alloc = std::allocator<ATC_matrix::TRI_COORD<double> >]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_Method.h:5,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_Coupling.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_Coupling.cpp:2:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1820 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_Method.h:5,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_Coupling.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_Coupling.cpp:2:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
[ 2%] Building CXX object CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems/poemsobject.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems/poemsobject.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems/poemsobject.cpp
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_Method.h:5,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_Coupling.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_Coupling.cpp:2:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 2%] Building CXX object CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems/poemstreenode.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems/poemstreenode.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems/poemstreenode.cpp
/usr/include/c++/9/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]':
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 2%] Building CXX object CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems/point.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems/point.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems/point.cpp
[ 3%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_atom.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_atom.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_atom.cpp
[ 4%] Building CXX object CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems/prismaticjoint.cpp.o
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[ 4%] Building CXX object CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems/revolutejoint.cpp.o
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[ 4%] Building CXX object CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems/rigidbody.cpp.o
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[ 4%] Building CXX object CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems/rowmatrix.cpp.o
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[ 4%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_base_atomic.cpp.o
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[ 4%] Building CXX object CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems/solver.cpp.o
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[ 4%] Building CXX object CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems/sphericaljoint.cpp.o
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[ 4%] Building CXX object CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems/system.cpp.o
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[ 4%] Building CXX object CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems/vect3.cpp.o
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[ 4%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_CouplingEnergy.cpp.o
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[ 4%] Building CXX object CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems/vect4.cpp.o
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[ 4%] Building CXX object CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems/vect6.cpp.o
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[ 4%] Building CXX object CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems/virtualcolmatrix.cpp.o
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[ 4%] Building CXX object CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems/virtualmatrix.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems/virtualmatrix.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems/virtualmatrix.cpp
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make[3]: Entering directory '/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build'
[ 4%] Building CXX object CMakeFiles/ocl_get_devices.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/geryon/ucl_get_devices.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DUCL_OPENCL -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -o CMakeFiles/ocl_get_devices.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/geryon/ucl_get_devices.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/geryon/ucl_get_devices.cpp
[ 4%] Building CXX object CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems/virtualrowmatrix.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems/virtualrowmatrix.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems/virtualrowmatrix.cpp
[ 4%] Building CXX object CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems/workspace.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems/workspace.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems/workspace.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/geryon/ocl_device.h:28,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/geryon/ucl_get_devices.cpp:25:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const ucl_opencl::OCLProperties&}; _Tp = ucl_opencl::OCLProperties; _Alloc = std::allocator<ucl_opencl::OCLProperties>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<ucl_opencl::OCLProperties>::iterator' {aka '__gnu_cxx::__normal_iterator<ucl_opencl::OCLProperties*, std::vector<ucl_opencl::OCLProperties> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
[ 4%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_base_dipole.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_base_dipole.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_base_dipole.cpp
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/geryon/ocl_device.h:28,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/geryon/ucl_get_devices.cpp:25:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void ucl_opencl::UCL_Device::add_properties(cl_device_id)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ucl_opencl::OCLProperties*, std::vector<ucl_opencl::OCLProperties> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[ 4%] Linking CXX executable ocl_get_devices
/usr/bin/cmake -E cmake_link_script CMakeFiles/ocl_get_devices.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/ocl_get_devices.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/geryon/ucl_get_devices.cpp.o -o ocl_get_devices -lOpenCL
make[3]: Leaving directory '/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build'
[ 4%] Built target ocl_get_devices
[ 4%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_base_dpd.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_base_dpd.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_base_dpd.cpp
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[ 5%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_base_ellipsoid.cpp.o
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[ 5%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_CouplingMass.cpp.o
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[ 5%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_base_three.cpp.o
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[ 5%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_beck.cpp.o
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[ 5%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_beck_ext.cpp.o
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[ 5%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_born.cpp.o
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[ 5%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_born_coul_long.cpp.o
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[ 5%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_born_coul_long_cs.cpp.o
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[ 5%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_CouplingMomentum.cpp.o
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[ 5%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_CouplingMomentumEnergy.cpp.o
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[ 5%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_born_coul_long_cs_ext.cpp.o
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[ 5%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_born_coul_long_ext.cpp.o
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[ 5%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_Method.cpp.o
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[ 5%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_born_coul_wolf.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_born_coul_wolf.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_born_coul_wolf.cpp
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_Method.h:5,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_Coupling.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_CouplingMomentum.h:7,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_CouplingMomentum.cpp:2:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1820 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_Method.h:5,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_Coupling.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_CouplingMomentum.h:7,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_CouplingMomentum.cpp:2:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_Method.h:5,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_Coupling.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_CouplingMomentum.h:7,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_CouplingMomentum.cpp:2:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]':
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 6%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_born_coul_wolf_cs.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_born_coul_wolf_cs.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_born_coul_wolf_cs.cpp
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_Method.h:5,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_Coupling.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_CouplingMomentumEnergy.h:5,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_CouplingMomentumEnergy.cpp:2:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1820 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_Method.h:5,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_Coupling.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_CouplingMomentumEnergy.h:5,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_CouplingMomentumEnergy.cpp:2:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_Method.h:5,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_Coupling.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_CouplingMomentumEnergy.h:5,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_CouplingMomentumEnergy.cpp:2:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]':
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 6%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_born_coul_wolf_cs_ext.cpp.o
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[ 6%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_born_coul_wolf_ext.cpp.o
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[ 6%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_born_ext.cpp.o
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[ 6%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_Transfer.cpp.o
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[ 6%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_buck.cpp.o
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[ 6%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TransferKernel.cpp.o
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[ 6%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_buck_coul.cpp.o
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[ 6%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_buck_coul_ext.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_buck_coul_ext.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_buck_coul_ext.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TypeDefs.h:5,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_Method.h:5,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_Method.cpp:2:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD<double>}; _Tp = ATC_matrix::TRI_COORD<double>; _Alloc = std::allocator<ATC_matrix::TRI_COORD<double> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > >::iterator' {aka '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ATC_matrix::TRI_COORD<double>}; _Tp = ATC_matrix::TRI_COORD<double>; _Alloc = std::allocator<ATC_matrix::TRI_COORD<double> >]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_Method.h:5,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_Method.cpp:2:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1820 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_Method.h:5,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_Method.cpp:2:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_Method.h:5,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_Method.cpp:2:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]':
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TypeDefs.h:5,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_Method.h:5,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_Transfer.h:6,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TransferKernel.h:6,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TransferKernel.cpp:2:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD<double>}; _Tp = ATC_matrix::TRI_COORD<double>; _Alloc = std::allocator<ATC_matrix::TRI_COORD<double> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > >::iterator' {aka '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void ATC_matrix::SparseMatrix<T>::add(ATC_matrix::INDEX, ATC_matrix::INDEX, T) [with T = double]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_Method.h:5,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_Transfer.h:6,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TransferKernel.h:6,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TransferKernel.cpp:2:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1820 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_Method.h:5,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_Transfer.h:6,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TransferKernel.h:6,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TransferKernel.cpp:2:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_Method.h:5,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_Transfer.h:6,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TransferKernel.h:6,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TransferKernel.cpp:2:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]':
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 6%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_buck_coul_long.cpp.o
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[ 6%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TransferPartitionOfUnity.cpp.o
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[ 6%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_buck_coul_long_ext.cpp.o
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[ 6%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_buck_ext.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_buck_ext.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_buck_ext.cpp
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_Method.h:5,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_Transfer.h:6,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_Transfer.cpp:2:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1820 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_Method.h:5,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_Transfer.h:6,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_Transfer.cpp:2:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_Method.h:5,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_Transfer.h:6,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_Transfer.cpp:2:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]':
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 6%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_charmm_long.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_charmm_long.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_charmm_long.cpp
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_Method.h:5,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_Transfer.h:6,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TransferPartitionOfUnity.h:5,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TransferPartitionOfUnity.cpp:2:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1820 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_Method.h:5,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_Transfer.h:6,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TransferPartitionOfUnity.h:5,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TransferPartitionOfUnity.cpp:2:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_Method.h:5,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_Transfer.h:6,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TransferPartitionOfUnity.h:5,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TransferPartitionOfUnity.cpp:2:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]':
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 6%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_charmm_long_ext.cpp.o
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[ 6%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_colloid.cpp.o
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[ 6%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_colloid_ext.cpp.o
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[ 6%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_coul.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_coul.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_coul.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TypeDefs.h:5,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_Method.h:5,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_Transfer.h:6,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_Transfer.cpp:2:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD<double>}; _Tp = ATC_matrix::TRI_COORD<double>; _Alloc = std::allocator<ATC_matrix::TRI_COORD<double> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > >::iterator' {aka '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void ATC_matrix::SparseMatrix<T>::set(ATC_matrix::INDEX, ATC_matrix::INDEX, T) [with T = double]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
[ 6%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/AtomToMoleculeTransfer.cpp.o
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[ 7%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_coul_debye.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_coul_debye.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_coul_debye.cpp
[ 7%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_coul_debye_ext.cpp.o
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[ 7%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/AtomicRegulator.cpp.o
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[ 7%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_coul_dsf.cpp.o
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[ 7%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/BodyForce.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/BodyForce.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/BodyForce.cpp
[ 7%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_coul_dsf_ext.cpp.o
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In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/LammpsInterface.h:25,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/PerAtomQuantity.h:7,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/PerAtomQuantityLibrary.h:6,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/TransferOperator.h:6,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/AtomToMoleculeTransfer.h:9,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/AtomToMoleculeTransfer.cpp:2:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1820 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/LammpsInterface.h:25,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/PerAtomQuantity.h:7,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/PerAtomQuantityLibrary.h:6,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/TransferOperator.h:6,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/AtomToMoleculeTransfer.h:9,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/AtomToMoleculeTransfer.cpp:2:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/LammpsInterface.h:25,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/PerAtomQuantity.h:7,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/PerAtomQuantityLibrary.h:6,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/TransferOperator.h:6,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/AtomToMoleculeTransfer.h:9,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/AtomToMoleculeTransfer.cpp:2:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]':
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 7%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_coul_ext.cpp.o
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[ 7%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/CBLattice.cpp.o
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[ 7%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/CauchyBorn.cpp.o
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[ 7%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_coul_long.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_coul_long.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_coul_long.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/CBLattice.h:5,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/CBLattice.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
[ 7%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_coul_long_cs.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_coul_long_cs.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_coul_long_cs.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TypeDefs.h:5,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/AtomicRegulator.h:6,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/AtomicRegulator.cpp:2:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD<double>}; _Tp = ATC_matrix::TRI_COORD<double>; _Alloc = std::allocator<ATC_matrix::TRI_COORD<double> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > >::iterator' {aka '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ATC_matrix::TRI_COORD<double>}; _Tp = ATC_matrix::TRI_COORD<double>; _Alloc = std::allocator<ATC_matrix::TRI_COORD<double> >]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/AtomicRegulator.h:6,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/AtomicRegulator.cpp:2:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1820 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/AtomicRegulator.h:6,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/AtomicRegulator.cpp:2:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/AtomicRegulator.h:6,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/AtomicRegulator.cpp:2:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]':
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 8%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/CbPotential.cpp.o
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[ 8%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ChargeRegulator.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ChargeRegulator.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ChargeRegulator.cpp
[ 8%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_coul_long_cs_ext.cpp.o
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[ 8%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_coul_long_ext.cpp.o
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[ 8%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ConcentrationRegulator.cpp.o
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[ 8%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_device.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_device.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_device.cpp
[ 8%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ElasticTimeIntegrator.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ElasticTimeIntegrator.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ElasticTimeIntegrator.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/geryon/ocl_device.h:28,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/geryon/ocl_timer.h:28,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_device.cpp:16:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const ucl_opencl::OCLProperties&}; _Tp = ucl_opencl::OCLProperties; _Alloc = std::allocator<ucl_opencl::OCLProperties>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<ucl_opencl::OCLProperties>::iterator' {aka '__gnu_cxx::__normal_iterator<ucl_opencl::OCLProperties*, std::vector<ucl_opencl::OCLProperties> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/geryon/ocl_device.h:28,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/geryon/ocl_timer.h:28,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_device.cpp:16:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void ucl_opencl::UCL_Device::add_properties(cl_device_id)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ucl_opencl::OCLProperties*, std::vector<ucl_opencl::OCLProperties> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/set:60,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TypeDefs.h:4,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/AtomicRegulator.h:6,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ChargeRegulator.h:4,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ChargeRegulator.cpp:1:
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const int&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, std::pair<ATC_matrix::DenseVector<double>, double> >; _KeyOfValue = std::_Select1st<std::pair<const int, std::pair<ATC_matrix::DenseVector<double>, double> > >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, std::pair<ATC_matrix::DenseVector<double>, double> > >]':
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, std::pair<ATC_matrix::DenseVector<double>, double> >, std::_Select1st<std::pair<const int, std::pair<ATC_matrix::DenseVector<double>, double> > >, std::less<int>, std::allocator<std::pair<const int, std::pair<ATC_matrix::DenseVector<double>, double> > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const int, std::pair<ATC_matrix::DenseVector<double>, double> > >'} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TypeDefs.h:6,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/AtomicRegulator.h:6,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ChargeRegulator.h:4,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ChargeRegulator.cpp:1:
/usr/include/c++/9/bits/stl_map.h: In member function 'virtual void ATC::ChargeRegulatorMethodEffectiveCharge::initialize()':
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, std::pair<ATC_matrix::DenseVector<double>, double> >, std::_Select1st<std::pair<const int, std::pair<ATC_matrix::DenseVector<double>, double> > >, std::less<int>, std::allocator<std::pair<const int, std::pair<ATC_matrix::DenseVector<double>, double> > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const int, std::pair<ATC_matrix::DenseVector<double>, double> > >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/AtomicRegulator.h:6,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ChargeRegulator.h:4,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ChargeRegulator.cpp:1:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1820 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/AtomicRegulator.h:6,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ChargeRegulator.h:4,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ChargeRegulator.cpp:1:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/AtomicRegulator.h:6,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ChargeRegulator.h:4,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ChargeRegulator.cpp:1:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]':
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 8%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ElectronChargeDensity.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ElectronChargeDensity.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ElectronChargeDensity.cpp
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Matrix.h:3,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/DenseMatrix.h:4,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixLibrary.h:4,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/TimeIntegrator.h:4,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ElasticTimeIntegrator.h:6,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ElasticTimeIntegrator.cpp:2:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1820 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Matrix.h:3,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/DenseMatrix.h:4,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixLibrary.h:4,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/TimeIntegrator.h:4,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ElasticTimeIntegrator.h:6,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ElasticTimeIntegrator.cpp:2:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Matrix.h:3,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/DenseMatrix.h:4,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixLibrary.h:4,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/TimeIntegrator.h:4,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ElasticTimeIntegrator.h:6,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ElasticTimeIntegrator.cpp:2:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 8%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_dipole_lj.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_dipole_lj.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_dipole_lj.cpp
/usr/include/c++/9/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]':
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 8%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ElectronDragPower.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ElectronDragPower.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ElectronDragPower.cpp
[ 8%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ElectronFlux.cpp.o
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[ 8%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_dipole_lj_ext.cpp.o
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[ 8%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_dipole_lj_sf.cpp.o
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[ 8%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_dipole_lj_sf_ext.cpp.o
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[ 8%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ElectronHeatCapacity.cpp.o
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[ 8%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_dipole_long_lj.cpp.o
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[ 8%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ElectronHeatFlux.cpp.o
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[ 9%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_dipole_long_lj_ext.cpp.o
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[ 9%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_dpd.cpp.o
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[ 9%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_dpd_ext.cpp.o
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[ 9%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ElectronPhononExchange.cpp.o
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[ 9%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ExtrinsicModel.cpp.o
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[ 9%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_eam.cpp.o
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[ 9%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_eam_alloy_ext.cpp.o
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[ 9%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_eam_ext.cpp.o
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[ 9%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ExtrinsicModelDriftDiffusion.cpp.o
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[ 9%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ExtrinsicModelElectrostatic.cpp.o
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[ 9%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_eam_fs_ext.cpp.o
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[ 9%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ExtrinsicModelTwoTemperature.cpp.o
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[ 9%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_gauss.cpp.o
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[ 9%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_gauss_ext.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_gauss_ext.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_gauss_ext.cpp
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ExtrinsicModel.h:8,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ExtrinsicModelTwoTemperature.h:6,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ExtrinsicModelDriftDiffusion.h:8,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ExtrinsicModelDriftDiffusion.cpp:2:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1820 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ExtrinsicModel.h:8,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ExtrinsicModelTwoTemperature.h:6,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ExtrinsicModelDriftDiffusion.h:8,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ExtrinsicModelDriftDiffusion.cpp:2:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ExtrinsicModel.h:8,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ExtrinsicModelTwoTemperature.h:6,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ExtrinsicModelDriftDiffusion.h:8,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ExtrinsicModelDriftDiffusion.cpp:2:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]':
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 9%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_gayberne.cpp.o
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In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ExtrinsicModelDriftDiffusion.h:6,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ExtrinsicModelDriftDiffusion.cpp:2:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD<double>}; _Tp = ATC_matrix::TRI_COORD<double>; _Alloc = std::allocator<ATC_matrix::TRI_COORD<double> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > >::iterator' {aka '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ATC_matrix::TRI_COORD<double>}; _Tp = ATC_matrix::TRI_COORD<double>; _Alloc = std::allocator<ATC_matrix::TRI_COORD<double> >]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:60,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ExtrinsicModel.h:5,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ExtrinsicModelElectrostatic.h:7,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ExtrinsicModelElectrostatic.cpp:2:
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const int&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, std::pair<ATC_matrix::DenseVector<double>, double> >; _KeyOfValue = std::_Select1st<std::pair<const int, std::pair<ATC_matrix::DenseVector<double>, double> > >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, std::pair<ATC_matrix::DenseVector<double>, double> > >]':
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, std::pair<ATC_matrix::DenseVector<double>, double> >, std::_Select1st<std::pair<const int, std::pair<ATC_matrix::DenseVector<double>, double> > >, std::less<int>, std::allocator<std::pair<const int, std::pair<ATC_matrix::DenseVector<double>, double> > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const int, std::pair<ATC_matrix::DenseVector<double>, double> > >'} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ExtrinsicModel.h:8,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ExtrinsicModelTwoTemperature.h:6,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ExtrinsicModelTwoTemperature.cpp:2:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1820 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ExtrinsicModel.h:8,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ExtrinsicModelTwoTemperature.h:6,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ExtrinsicModelTwoTemperature.cpp:2:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ExtrinsicModel.h:8,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ExtrinsicModelTwoTemperature.h:6,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ExtrinsicModelTwoTemperature.cpp:2:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]':
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ExtrinsicModel.h:5,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ExtrinsicModelElectrostatic.h:7,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ExtrinsicModelElectrostatic.cpp:2:
/usr/include/c++/9/bits/stl_map.h: In member function 'void ATC::ExtrinsicModelElectrostatic::add_charged_surface(const string&, double)':
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, std::pair<ATC_matrix::DenseVector<double>, double> >, std::_Select1st<std::pair<const int, std::pair<ATC_matrix::DenseVector<double>, double> > >, std::less<int>, std::allocator<std::pair<const int, std::pair<ATC_matrix::DenseVector<double>, double> > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const int, std::pair<ATC_matrix::DenseVector<double>, double> > >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ExtrinsicModel.h:8,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ExtrinsicModelElectrostatic.h:7,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ExtrinsicModelElectrostatic.cpp:2:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1820 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ExtrinsicModel.h:8,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ExtrinsicModelElectrostatic.h:7,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ExtrinsicModelElectrostatic.cpp:2:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ExtrinsicModel.h:8,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ExtrinsicModelElectrostatic.h:7,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ExtrinsicModelElectrostatic.cpp:2:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]':
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 9%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_gayberne_ext.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_gayberne_ext.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_gayberne_ext.cpp
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[ 10%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/FE_Engine.cpp.o
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[ 10%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_lj.cpp.o
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[ 10%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/FE_Interpolate.cpp.o
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[ 10%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_lj96.cpp.o
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[ 10%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_lj96_ext.cpp.o
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[ 10%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/FE_Mesh.cpp.o
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[ 11%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_lj_class2_long.cpp.o
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[ 11%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_lj_class2_long_ext.cpp.o
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[ 11%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_lj_coul.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_lj_coul.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_lj_coul.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/FE_Element.h:4,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/FE_Mesh.cpp:2:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
[ 11%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_lj_coul_debye.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_lj_coul_debye.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_lj_coul_debye.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/FE_Engine.h:4,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/FE_Engine.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD<double>}; _Tp = ATC_matrix::TRI_COORD<double>; _Alloc = std::allocator<ATC_matrix::TRI_COORD<double> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > >::iterator' {aka '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ATC_matrix::TRI_COORD<double>}; _Tp = ATC_matrix::TRI_COORD<double>; _Alloc = std::allocator<ATC_matrix::TRI_COORD<double> >]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/FE_Engine.h:9,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/FE_Engine.cpp:1:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1820 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/FE_Engine.h:9,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/FE_Engine.cpp:1:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
[ 11%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/FieldEulerIntegrator.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/FieldEulerIntegrator.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/FieldEulerIntegrator.cpp
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/FE_Engine.h:9,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/FE_Engine.cpp:1:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]':
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 11%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_lj_coul_debye_ext.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_lj_coul_debye_ext.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_lj_coul_debye_ext.cpp
[ 11%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_lj_coul_ext.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_lj_coul_ext.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_lj_coul_ext.cpp
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/FE_Element.h:4,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/FE_Mesh.cpp:2:
/usr/include/c++/9/bits/stl_vector.h: In member function 'virtual void ATC::FE_Rectangular3DMesh::partition_mesh()':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'virtual void ATC::FE_Uniform3DMesh::partition_mesh()':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[ 11%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_lj_coul_long.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_lj_coul_long.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_lj_coul_long.cpp
[ 11%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_lj_coul_long_ext.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_lj_coul_long_ext.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_lj_coul_long_ext.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:17,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array2D.h:9,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/FieldEulerIntegrator.h:5,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/FieldEulerIntegrator.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD<double>}; _Tp = ATC_matrix::TRI_COORD<double>; _Alloc = std::allocator<ATC_matrix::TRI_COORD<double> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > >::iterator' {aka '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void ATC_matrix::SparseMatrix<T>::set(ATC_matrix::INDEX, ATC_matrix::INDEX, T) [with T = double]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array2D.h:9,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/FieldEulerIntegrator.h:5,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/FieldEulerIntegrator.cpp:1:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1820 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array2D.h:9,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/FieldEulerIntegrator.h:5,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/FieldEulerIntegrator.cpp:1:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
[ 11%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_lj_coul_msm.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_lj_coul_msm.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_lj_coul_msm.cpp
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array2D.h:9,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/FieldEulerIntegrator.h:5,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/FieldEulerIntegrator.cpp:1:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]':
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 11%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/FieldManager.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/FieldManager.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/FieldManager.cpp
[ 11%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Function.cpp.o
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[ 11%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_lj_coul_msm_ext.cpp.o
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[ 11%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/FundamentalAtomicQuantity.cpp.o
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[ 11%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_lj_cubic.cpp.o
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[ 11%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_lj_cubic_ext.cpp.o
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[ 11%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_lj_dsf.cpp.o
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[ 11%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/GhostManager.cpp.o
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[ 11%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_lj_dsf_ext.cpp.o
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In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/FieldManager.h:6,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/FieldManager.cpp:1:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1820 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/FieldManager.h:6,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/FieldManager.cpp:1:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/FieldManager.h:6,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/FieldManager.cpp:1:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]':
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 11%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_lj_expand.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_lj_expand.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_lj_expand.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TypeDefs.h:5,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/FieldManager.h:6,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/FieldManager.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD<double>}; _Tp = ATC_matrix::TRI_COORD<double>; _Alloc = std::allocator<ATC_matrix::TRI_COORD<double> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > >::iterator' {aka '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > >::iterator' {aka '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >'} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ATC_matrix::TRI_COORD<double>}; _Tp = ATC_matrix::TRI_COORD<double>; _Alloc = std::allocator<ATC_matrix::TRI_COORD<double> >]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
[ 12%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_lj_expand_coul_long.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_lj_expand_coul_long.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_lj_expand_coul_long.cpp
[ 12%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_lj_expand_coul_long_ext.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_lj_expand_coul_long_ext.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_lj_expand_coul_long_ext.cpp
[ 12%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ImplicitSolveOperator.cpp.o
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[ 12%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_lj_expand_ext.cpp.o
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[ 12%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_lj_ext.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_lj_ext.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_lj_ext.cpp
[ 12%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_lj_gromacs.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_lj_gromacs.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_lj_gromacs.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:17,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Matrix.h:3,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/DenseMatrix.h:4,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixLibrary.h:4,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/GhostManager.h:5,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/GhostManager.cpp:2:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
[ 12%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/InterscaleOperators.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/InterscaleOperators.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/InterscaleOperators.cpp
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Matrix.h:3,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/DenseMatrix.h:4,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixLibrary.h:4,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/GhostManager.h:5,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/GhostManager.cpp:2:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(std::pair<int, double>, std::pair<int, double>)>]':
/usr/include/c++/9/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >' changed in GCC 7.1
78 | __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b,
| ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(std::pair<int, double>, std::pair<int, double>)>]':
/usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >' changed in GCC 7.1
1820 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(std::pair<int, double>, std::pair<int, double>)>]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >' changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Matrix.h:3,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/DenseMatrix.h:4,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixLibrary.h:4,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/GhostManager.h:5,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/GhostManager.cpp:2:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >; _Distance = int; _Tp = std::pair<int, double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(std::pair<int, double>, std::pair<int, double>)>]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Matrix.h:3,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/DenseMatrix.h:4,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixLibrary.h:4,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/GhostManager.h:5,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/GhostManager.cpp:2:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(std::pair<int, double>, std::pair<int, double>)>]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1920:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >' changed in GCC 7.1
1920 | std::__move_median_to_first(__first, __first + 1, __mid, __last - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1921 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1920:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In member function 'int ATC::GhostModifierDampedHarmonicLayers::find_layers()':
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 12%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_lj_gromacs_ext.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_lj_gromacs_ext.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_lj_gromacs_ext.cpp
[ 12%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_lj_sdk.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_lj_sdk.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_lj_sdk.cpp
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array2D.h:9,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ImplicitSolveOperator.h:5,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ImplicitSolveOperator.cpp:2:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1820 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array2D.h:9,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ImplicitSolveOperator.h:5,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ImplicitSolveOperator.cpp:2:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array2D.h:9,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ImplicitSolveOperator.h:5,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ImplicitSolveOperator.cpp:2:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]':
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 12%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/KD_Tree.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/KD_Tree.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/KD_Tree.cpp
[ 12%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_lj_sdk_ext.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_lj_sdk_ext.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_lj_sdk_ext.cpp
[ 12%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/KernelFunction.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/KernelFunction.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/KernelFunction.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:17,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array2D.h:9,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/KD_Tree.h:4,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/KD_Tree.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Node&}; _Tp = Node; _Alloc = std::allocator<Node>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<Node>::iterator' {aka '__gnu_cxx::__normal_iterator<Node*, std::vector<Node> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {Node}; _Tp = Node; _Alloc = std::allocator<Node>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<Node>::iterator' {aka '__gnu_cxx::__normal_iterator<Node*, std::vector<Node> >'} changed in GCC 7.1
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array2D.h:9,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/KD_Tree.h:4,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/KD_Tree.cpp:1:
/usr/include/c++/9/bits/stl_algo.h: In function '_RandomAccessIterator std::__find_if(_RandomAccessIterator, _RandomAccessIterator, _Predicate, std::random_access_iterator_tag) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Node*, std::vector<Node> >; _Predicate = __gnu_cxx::__ops::_Iter_equals_val<const Node>]':
/usr/include/c++/9/bits/stl_algo.h:112:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Node*, std::vector<Node> >' changed in GCC 7.1
112 | __find_if(_RandomAccessIterator __first, _RandomAccessIterator __last,
| ^~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:112:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Node*, std::vector<Node> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Node*, std::vector<Node> >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(Node, Node)>]':
/usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Node*, std::vector<Node> >' changed in GCC 7.1
1820 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Node*, std::vector<Node> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(Node, Node)>]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Node*, std::vector<Node> >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Node*, std::vector<Node> >' changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array2D.h:9,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/KD_Tree.h:4,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/KD_Tree.cpp:1:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Node*, std::vector<Node> >; _Distance = int; _Tp = Node; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(Node, Node)>]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Node*, std::vector<Node> >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array2D.h:9,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/KD_Tree.h:4,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/KD_Tree.cpp:1:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Node*, std::vector<Node> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(Node, Node)>]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Node*, std::vector<Node> >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Node*, std::vector<Node> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Node*, std::vector<Node> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Node*, std::vector<Node> >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In constructor 'KD_Tree::KD_Tree(std::vector<Node>*, std::vector<std::pair<int, std::vector<Node> > >*, int)':
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Node*, std::vector<Node> >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Node*, std::vector<Node> >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Node*, std::vector<Node> >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:161:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Node*, std::vector<Node> >' changed in GCC 7.1
161 | return __find_if(__first, __last, __pred,
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
162 | std::__iterator_category(__first));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:17,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array2D.h:9,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/KD_Tree.h:4,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/KD_Tree.cpp:1:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Node*, std::vector<Node> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array2D.h:9,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/KD_Tree.h:4,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/KD_Tree.cpp:1:
/usr/include/c++/9/bits/stl_algo.h:161:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Node*, std::vector<Node> >' changed in GCC 7.1
161 | return __find_if(__first, __last, __pred,
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
162 | std::__iterator_category(__first));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:17,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array2D.h:9,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/KD_Tree.h:4,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/KD_Tree.cpp:1:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Node*, std::vector<Node> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:17,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array2D.h:9,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/KD_Tree.h:4,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/KD_Tree.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In static member function 'static KD_Tree* KD_Tree::create_KD_tree(int, int, const DENS_MAT*, int, const ATC_matrix::Array2D<int>&)':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Node*, std::vector<Node> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:17,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array2D.h:9,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/KD_Tree.h:4,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/KD_Tree.cpp:1:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Node*, std::vector<Node> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[ 12%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_lj_sdk_long.cpp.o
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[ 12%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/KinetoThermostat.cpp.o
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[ 12%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_lj_sdk_long_ext.cpp.o
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[ 12%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_lj_tip4p_long.cpp.o
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[ 12%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_lj_tip4p_long_ext.cpp.o
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[ 12%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Kinetostat.cpp.o
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[ 12%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_mie.cpp.o
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[ 12%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_mie_ext.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_mie_ext.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_mie_ext.cpp
[ 12%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/LammpsInterface.cpp.o
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In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/AtomicRegulator.h:6,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/KinetoThermostat.h:4,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/KinetoThermostat.cpp:1:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1820 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/AtomicRegulator.h:6,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/KinetoThermostat.h:4,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/KinetoThermostat.cpp:1:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/AtomicRegulator.h:6,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/KinetoThermostat.h:4,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/KinetoThermostat.cpp:1:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]':
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 12%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_morse.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_morse.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_morse.cpp
[ 13%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/LinearSolver.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/LinearSolver.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/LinearSolver.cpp
[ 14%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_morse_ext.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_morse_ext.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_morse_ext.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TypeDefs.h:5,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/LammpsInterface.h:25,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/LammpsInterface.cpp:2:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD<double>}; _Tp = ATC_matrix::TRI_COORD<double>; _Alloc = std::allocator<ATC_matrix::TRI_COORD<double> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > >::iterator' {aka '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ATC_matrix::TRI_COORD<double>}; _Tp = ATC_matrix::TRI_COORD<double>; _Alloc = std::allocator<ATC_matrix::TRI_COORD<double> >]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/LammpsInterface.h:25,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/LammpsInterface.cpp:2:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1820 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/LammpsInterface.h:25,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/LammpsInterface.cpp:2:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/LammpsInterface.h:25,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/LammpsInterface.cpp:2:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]':
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 14%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_neighbor.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_neighbor.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_neighbor.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TypeDefs.h:5,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/LinearSolver.h:5,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/LinearSolver.cpp:2:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD<double>}; _Tp = ATC_matrix::TRI_COORD<double>; _Alloc = std::allocator<ATC_matrix::TRI_COORD<double> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > >::iterator' {aka '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ATC_matrix::TRI_COORD<double>}; _Tp = ATC_matrix::TRI_COORD<double>; _Alloc = std::allocator<ATC_matrix::TRI_COORD<double> >]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
[ 14%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MPI_Wrappers.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MPI_Wrappers.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MPI_Wrappers.cpp
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/LinearSolver.h:5,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/LinearSolver.cpp:2:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1820 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/LinearSolver.h:5,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/LinearSolver.cpp:2:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/LinearSolver.h:5,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/LinearSolver.cpp:2:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]':
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/AtomicRegulator.h:6,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Kinetostat.h:4,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Kinetostat.cpp:1:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1820 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/AtomicRegulator.h:6,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Kinetostat.h:4,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Kinetostat.cpp:1:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/AtomicRegulator.h:6,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Kinetostat.h:4,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Kinetostat.cpp:1:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]':
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 14%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Material.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Material.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Material.cpp
[ 14%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_neighbor_shared.cpp.o
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[ 14%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Matrix.cpp.o
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[ 14%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_pppm.cpp.o
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[ 14%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_pppm_ext.cpp.o
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[ 14%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_re_squared.cpp.o
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[ 14%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_re_squared_ext.cpp.o
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[ 14%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_soft.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_soft.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_soft.cpp
[ 14%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_soft_ext.cpp.o
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[ 14%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MeshReader.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MeshReader.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MeshReader.cpp
[ 14%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_sw.cpp.o
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[ 14%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_sw_ext.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_sw_ext.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_sw_ext.cpp
[ 14%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_table.cpp.o
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[ 14%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_table_ext.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_table_ext.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_table_ext.cpp
[ 14%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_tersoff.cpp.o
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[ 14%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MoleculeSet.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MoleculeSet.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MoleculeSet.cpp
[ 14%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/NonLinearSolver.cpp.o
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[ 14%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_tersoff_ext.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_tersoff_ext.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_tersoff_ext.cpp
[ 14%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/OutputManager.cpp.o
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In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TypeDefs.h:5,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/NonLinearSolver.h:5,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/NonLinearSolver.cpp:2:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD<double>}; _Tp = ATC_matrix::TRI_COORD<double>; _Alloc = std::allocator<ATC_matrix::TRI_COORD<double> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > >::iterator' {aka '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void ATC_matrix::SparseMatrix<T>::set(ATC_matrix::INDEX, ATC_matrix::INDEX, T) [with T = double]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/NonLinearSolver.h:5,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/NonLinearSolver.cpp:2:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1820 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/NonLinearSolver.h:5,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/NonLinearSolver.cpp:2:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/NonLinearSolver.h:5,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/NonLinearSolver.cpp:2:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]':
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 15%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_tersoff_mod.cpp.o
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[ 15%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/PaqAtcUtility.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/PaqAtcUtility.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/PaqAtcUtility.cpp
[ 15%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_tersoff_mod_ext.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_tersoff_mod_ext.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_tersoff_mod_ext.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TypeDefs.h:5,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/OutputManager.h:4,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/OutputManager.cpp:5:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
[ 15%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_tersoff_zbl.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_tersoff_zbl.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_tersoff_zbl.cpp
[ 15%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_tersoff_zbl_ext.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_tersoff_zbl_ext.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_tersoff_zbl_ext.cpp
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TypeDefs.h:5,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/OutputManager.h:4,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/OutputManager.cpp:5:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void ATC::OutputManager::write_data(double, ATC::OUTPUT_LIST*, const int*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[ 15%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_ufm.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_ufm.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_ufm.cpp
[ 15%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_ufm_ext.cpp.o
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[ 15%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ParDiagonalMatrix.cpp.o
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[ 15%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_vashishta.cpp.o
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[ 15%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_vashishta_ext.cpp.o
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[ 15%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_yukawa.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_yukawa.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_yukawa.cpp
[ 15%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ParSparseMatrix.cpp.o
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[ 15%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_yukawa_colloid.cpp.o
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[ 15%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_yukawa_colloid_ext.cpp.o
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[ 15%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_yukawa_ext.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_yukawa_ext.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_yukawa_ext.cpp
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Matrix.h:3,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/DenseMatrix.h:4,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixLibrary.h:4,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/SparseMatrix.h:4,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ParSparseMatrix.h:6,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ParSparseMatrix.cpp:1:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1820 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Matrix.h:3,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/DenseMatrix.h:4,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixLibrary.h:4,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/SparseMatrix.h:4,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ParSparseMatrix.h:6,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ParSparseMatrix.cpp:1:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Matrix.h:3,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/DenseMatrix.h:4,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixLibrary.h:4,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/SparseMatrix.h:4,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ParSparseMatrix.h:6,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ParSparseMatrix.cpp:1:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]':
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 15%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_zbl.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/gpu -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_zbl.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_zbl.cpp
[ 15%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/PerAtomQuantityLibrary.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/PerAtomQuantityLibrary.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/PerAtomQuantityLibrary.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:17,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Matrix.h:3,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/DenseMatrix.h:4,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixLibrary.h:4,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/SparseMatrix.h:4,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ParSparseMatrix.h:6,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ParSparseMatrix.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD<double>}; _Tp = ATC_matrix::TRI_COORD<double>; _Alloc = std::allocator<ATC_matrix::TRI_COORD<double> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > >::iterator' {aka '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void ATC_matrix::SparseMatrix<T>::set(ATC_matrix::INDEX, ATC_matrix::INDEX, T) [with T = double]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
[ 15%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/PerPairQuantity.cpp.o
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[ 15%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/gpu/lal_zbl_ext.cpp.o
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[ 15%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/PhysicsModel.cpp.o
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In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TypeDefs.h:5,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/LammpsInterface.h:25,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/PerPairQuantity.h:7,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/PerPairQuantity.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD<double>}; _Tp = ATC_matrix::TRI_COORD<double>; _Alloc = std::allocator<ATC_matrix::TRI_COORD<double> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > >::iterator' {aka '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ATC_matrix::TRI_COORD<double>}; _Tp = ATC_matrix::TRI_COORD<double>; _Alloc = std::allocator<ATC_matrix::TRI_COORD<double> >]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/LammpsInterface.h:25,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/PerPairQuantity.h:7,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/PerPairQuantity.cpp:1:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1820 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/LammpsInterface.h:25,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/PerPairQuantity.h:7,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/PerPairQuantity.cpp:1:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/LammpsInterface.h:25,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/PerPairQuantity.h:7,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/PerPairQuantity.cpp:1:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]':
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 16%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/PolynomialSolver.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/PolynomialSolver.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/PolynomialSolver.cpp
[ 16%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/PrescribedDataManager.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/PrescribedDataManager.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/PrescribedDataManager.cpp
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array2D.h:9,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/PoissonSolver.h:5,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/PoissonSolver.cpp:1:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1820 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array2D.h:9,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/PoissonSolver.h:5,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/PoissonSolver.cpp:1:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array2D.h:9,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/PoissonSolver.h:5,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/PoissonSolver.cpp:1:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]':
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:17,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array2D.h:9,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/PoissonSolver.h:5,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/PoissonSolver.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD<double>}; _Tp = ATC_matrix::TRI_COORD<double>; _Alloc = std::allocator<ATC_matrix::TRI_COORD<double> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > >::iterator' {aka '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void ATC_matrix::SparseMatrix<T>::set(ATC_matrix::INDEX, ATC_matrix::INDEX, T) [with T = double]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array2D.h:9,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/PhysicsModel.h:7,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/PhysicsModel.cpp:1:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1820 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array2D.h:9,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/PhysicsModel.h:7,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/PhysicsModel.cpp:1:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array2D.h:9,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/PhysicsModel.h:7,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/PhysicsModel.cpp:1:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]':
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/PhysicsModel.h:5,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/PhysicsModel.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD<double>}; _Tp = ATC_matrix::TRI_COORD<double>; _Alloc = std::allocator<ATC_matrix::TRI_COORD<double> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > >::iterator' {aka '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > >::iterator' {aka '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >'} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In member function 'void ATC_matrix::SparseMatrix<T>::set(ATC_matrix::INDEX, ATC_matrix::INDEX, T) [with T = double]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
[ 16%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Quadrature.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Quadrature.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Quadrature.cpp
[ 16%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/SchrodingerSolver.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/SchrodingerSolver.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/SchrodingerSolver.cpp
[ 16%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/SpeciesTimeIntegrator.cpp.o
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In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TypeDefs.h:5,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/LammpsInterface.h:25,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/PerAtomQuantity.h:7,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/PerAtomQuantityLibrary.h:6,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/PerAtomQuantityLibrary.cpp:2:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD<double>}; _Tp = ATC_matrix::TRI_COORD<double>; _Alloc = std::allocator<ATC_matrix::TRI_COORD<double> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > >::iterator' {aka '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ATC_matrix::TRI_COORD<double>}; _Tp = ATC_matrix::TRI_COORD<double>; _Alloc = std::allocator<ATC_matrix::TRI_COORD<double> >]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/LammpsInterface.h:25,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/PerAtomQuantity.h:7,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/PerAtomQuantityLibrary.h:6,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/PerAtomQuantityLibrary.cpp:2:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1820 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/LammpsInterface.h:25,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/PerAtomQuantity.h:7,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/PerAtomQuantityLibrary.h:6,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/PerAtomQuantityLibrary.cpp:2:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/LammpsInterface.h:25,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/PerAtomQuantity.h:7,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/PerAtomQuantityLibrary.h:6,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/PerAtomQuantityLibrary.cpp:2:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]':
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 16%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Stress.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Stress.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Stress.cpp
[ 16%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ThermalTimeIntegrator.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ThermalTimeIntegrator.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ThermalTimeIntegrator.cpp
[ 16%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Thermostat.cpp.o
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In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:17,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array2D.h:9,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/SchrodingerSolver.h:5,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/SchrodingerSolver.cpp:2:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD<double>}; _Tp = ATC_matrix::TRI_COORD<double>; _Alloc = std::allocator<ATC_matrix::TRI_COORD<double> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > >::iterator' {aka '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void ATC_matrix::SparseMatrix<T>::set(ATC_matrix::INDEX, ATC_matrix::INDEX, T) [with T = double]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array2D.h:9,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/SchrodingerSolver.h:5,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/SchrodingerSolver.cpp:2:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1820 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array2D.h:9,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/SchrodingerSolver.h:5,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/SchrodingerSolver.cpp:2:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array2D.h:9,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/SchrodingerSolver.h:5,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/SchrodingerSolver.cpp:2:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]':
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 16%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/TimeFilter.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/TimeFilter.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/TimeFilter.cpp
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Matrix.h:3,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/DenseMatrix.h:4,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixLibrary.h:4,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/TimeIntegrator.h:4,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ThermalTimeIntegrator.h:5,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ThermalTimeIntegrator.cpp:2:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1820 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Matrix.h:3,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/DenseMatrix.h:4,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixLibrary.h:4,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/TimeIntegrator.h:4,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ThermalTimeIntegrator.h:5,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ThermalTimeIntegrator.cpp:2:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Matrix.h:3,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/DenseMatrix.h:4,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixLibrary.h:4,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/TimeIntegrator.h:4,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ThermalTimeIntegrator.h:5,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ThermalTimeIntegrator.cpp:2:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]':
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 16%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/TimeIntegrator.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/TimeIntegrator.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/TimeIntegrator.cpp
[ 16%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/TransferLibrary.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/TransferLibrary.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/TransferLibrary.cpp
[ 16%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/TransferOperator.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/TransferOperator.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/TransferOperator.cpp
[ 16%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Vector.cpp.o
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In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/AtomicRegulator.h:6,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Thermostat.h:4,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Thermostat.cpp:1:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1820 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
[ 16%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ViscousStress.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ViscousStress.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ViscousStress.cpp
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/AtomicRegulator.h:6,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Thermostat.h:4,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Thermostat.cpp:1:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/AtomicRegulator.h:6,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Thermostat.h:4,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Thermostat.cpp:1:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]':
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 16%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/WeakEquationChargeDiffusion.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/WeakEquationChargeDiffusion.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/WeakEquationChargeDiffusion.cpp
[ 17%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/WeakEquationDiffusion.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/WeakEquationDiffusion.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/WeakEquationDiffusion.cpp
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/LammpsInterface.h:25,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/PerAtomQuantity.h:7,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/PerAtomQuantityLibrary.h:6,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/TransferOperator.h:6,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/TransferOperator.cpp:2:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1820 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/LammpsInterface.h:25,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/PerAtomQuantity.h:7,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/PerAtomQuantityLibrary.h:6,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/TransferOperator.h:6,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/TransferOperator.cpp:2:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/LammpsInterface.h:25,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/PerAtomQuantity.h:7,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/PerAtomQuantityLibrary.h:6,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/TransferOperator.h:6,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/TransferOperator.cpp:2:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]':
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 17%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/WeakEquationElectronContinuity.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/WeakEquationElectronContinuity.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/WeakEquationElectronContinuity.cpp
[ 17%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/WeakEquationElectronMomentum.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/WeakEquationElectronMomentum.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/WeakEquationElectronMomentum.cpp
[ 17%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/WeakEquationElectronTemperature.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/WeakEquationElectronTemperature.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/WeakEquationElectronTemperature.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/TransferLibrary.h:8,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/TransferLibrary.cpp:2:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD<double>}; _Tp = ATC_matrix::TRI_COORD<double>; _Alloc = std::allocator<ATC_matrix::TRI_COORD<double> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > >::iterator' {aka '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ATC_matrix::TRI_COORD<double>}; _Tp = ATC_matrix::TRI_COORD<double>; _Alloc = std::allocator<ATC_matrix::TRI_COORD<double> >]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/LammpsInterface.h:25,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/PerAtomQuantity.h:7,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/PerAtomQuantityLibrary.h:6,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/TransferOperator.h:6,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/TransferLibrary.h:11,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/TransferLibrary.cpp:2:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1820 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/LammpsInterface.h:25,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/PerAtomQuantity.h:7,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/PerAtomQuantityLibrary.h:6,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/TransferOperator.h:6,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/TransferLibrary.h:11,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/TransferLibrary.cpp:2:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/LammpsInterface.h:25,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/PerAtomQuantity.h:7,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/PerAtomQuantityLibrary.h:6,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/TransferOperator.h:6,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/TransferLibrary.h:11,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/TransferLibrary.cpp:2:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]':
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 17%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/WeakEquationMassDiffusion.cpp.o
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[ 17%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/WeakEquationMomentum.cpp.o
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[ 17%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/WeakEquationPhononTemperature.cpp.o
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[ 17%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc/WeakEquationPoisson.cpp.o
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[ 17%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/atom.cpp.o
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[ 17%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/atom_map.cpp.o
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[ 17%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/atom_vec.cpp.o
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[ 17%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/atom_vec_atomic.cpp.o
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[ 17%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/atom_vec_body.cpp.o
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[ 17%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/atom_vec_charge.cpp.o
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[ 17%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/atom_vec_ellipsoid.cpp.o
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[ 17%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/atom_vec_hybrid.cpp.o
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[ 18%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/atom_vec_line.cpp.o
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[ 18%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/atom_vec_sphere.cpp.o
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[ 18%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/atom_vec_tri.cpp.o
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[ 18%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/balance.cpp.o
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[ 18%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/body.cpp.o
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[ 18%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/bond.cpp.o
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[ 18%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/bond_deprecated.cpp.o
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[ 18%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/bond_hybrid.cpp.o
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[ 18%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/bond_zero.cpp.o
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[ 18%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/change_box.cpp.o
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[ 18%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/citeme.cpp.o
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[ 18%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/comm.cpp.o
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[ 18%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/comm_brick.cpp.o
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[ 18%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/comm_tiled.cpp.o
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[ 18%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/compute.cpp.o
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[ 19%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/compute_adf.cpp.o
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[ 19%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/compute_aggregate_atom.cpp.o
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[ 19%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/compute_angle.cpp.o
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[ 19%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/compute_angle_local.cpp.o
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[ 19%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/compute_angmom_chunk.cpp.o
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[ 19%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/compute_bond.cpp.o
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[ 19%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/compute_bond_local.cpp.o
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[ 19%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/compute_centro_atom.cpp.o
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[ 19%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/compute_centroid_stress_atom.cpp.o
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[ 19%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/compute_chunk_atom.cpp.o
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[ 19%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/compute_chunk_spread_atom.cpp.o
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[ 19%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/compute_cluster_atom.cpp.o
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[ 19%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/compute_cna_atom.cpp.o
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[ 19%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/compute_com.cpp.o
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[ 19%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/compute_com_chunk.cpp.o
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[ 20%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/compute_contact_atom.cpp.o
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[ 20%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/compute_coord_atom.cpp.o
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[ 20%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/compute_deprecated.cpp.o
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[ 20%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/compute_dihedral.cpp.o
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[ 20%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/compute_dihedral_local.cpp.o
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[ 20%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/compute_dipole_chunk.cpp.o
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[ 20%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/compute_displace_atom.cpp.o
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[ 20%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/compute_erotate_sphere.cpp.o
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[ 20%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/compute_erotate_sphere_atom.cpp.o
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[ 20%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/compute_fragment_atom.cpp.o
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[ 20%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/compute_global_atom.cpp.o
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[ 20%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/compute_group_group.cpp.o
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[ 20%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/compute_gyration.cpp.o
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[ 20%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/compute_gyration_chunk.cpp.o
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[ 20%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/compute_heat_flux.cpp.o
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[ 21%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/compute_hexorder_atom.cpp.o
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[ 21%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/compute_improper.cpp.o
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[ 21%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/compute_improper_local.cpp.o
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[ 21%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/compute_inertia_chunk.cpp.o
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[ 21%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/compute_ke.cpp.o
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[ 21%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/compute_ke_atom.cpp.o
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[ 21%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/compute_msd.cpp.o
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[ 21%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/compute_msd_chunk.cpp.o
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[ 21%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/compute_omega_chunk.cpp.o
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[ 21%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/compute_orientorder_atom.cpp.o
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[ 21%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/compute_pair.cpp.o
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[ 21%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/compute_pair_local.cpp.o
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[ 21%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/compute_pe.cpp.o
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[ 21%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/compute_pe_atom.cpp.o
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[ 22%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/compute_pressure.cpp.o
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[ 22%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/compute_property_atom.cpp.o
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[ 22%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/compute_property_chunk.cpp.o
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[ 22%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/compute_property_local.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Dlammps_EXPORTS -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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[ 22%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/compute_rdf.cpp.o
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[ 22%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/compute_reduce.cpp.o
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[ 22%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/compute_reduce_chunk.cpp.o
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[ 22%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/compute_reduce_region.cpp.o
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[ 22%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/compute_slice.cpp.o
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[ 22%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/compute_stress_atom.cpp.o
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[ 22%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/compute_temp.cpp.o
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[ 22%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/compute_temp_chunk.cpp.o
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[ 22%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/compute_temp_com.cpp.o
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[ 22%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/compute_temp_deform.cpp.o
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[ 22%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/compute_temp_partial.cpp.o
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[ 23%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/compute_temp_profile.cpp.o
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[ 23%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/compute_temp_ramp.cpp.o
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[ 23%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/compute_temp_region.cpp.o
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[ 23%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/compute_temp_sphere.cpp.o
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[ 23%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/compute_torque_chunk.cpp.o
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[ 23%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/compute_vacf.cpp.o
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[ 23%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/compute_vcm_chunk.cpp.o
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[ 23%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/create_atoms.cpp.o
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[ 23%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/create_bonds.cpp.o
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[ 23%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/create_box.cpp.o
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[ 23%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/delete_atoms.cpp.o
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[ 23%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/delete_bonds.cpp.o
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[ 23%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/deprecated.cpp.o
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[ 23%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/dihedral.cpp.o
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[ 23%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/dihedral_deprecated.cpp.o
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[ 24%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/dihedral_hybrid.cpp.o
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[ 24%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/dihedral_zero.cpp.o
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[ 24%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/displace_atoms.cpp.o
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[ 24%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/domain.cpp.o
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[ 24%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/dump.cpp.o
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[ 24%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/dump_atom.cpp.o
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[ 24%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/dump_cfg.cpp.o
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[ 24%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/dump_custom.cpp.o
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[ 24%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/dump_dcd.cpp.o
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[ 24%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/dump_deprecated.cpp.o
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[ 24%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/dump_image.cpp.o
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[ 24%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/dump_local.cpp.o
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[ 24%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/dump_movie.cpp.o
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/usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fPIC -o CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/dump_movie.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/src/dump_movie.cpp
[ 24%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/dump_xyz.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Dlammps_EXPORTS -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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[ 24%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/error.cpp.o
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[ 25%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/finish.cpp.o
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[ 25%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/fix.cpp.o
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[ 25%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/fix_adapt.cpp.o
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[ 25%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/fix_addforce.cpp.o
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[ 25%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/fix_ave_atom.cpp.o
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[ 25%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/fix_ave_chunk.cpp.o
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[ 25%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/fix_ave_correlate.cpp.o
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[ 25%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/fix_ave_histo.cpp.o
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[ 25%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/fix_ave_histo_weight.cpp.o
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[ 25%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/fix_ave_time.cpp.o
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[ 25%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/fix_aveforce.cpp.o
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[ 25%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/fix_balance.cpp.o
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[ 25%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/fix_box_relax.cpp.o
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[ 25%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/fix_controller.cpp.o
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[ 25%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/fix_deform.cpp.o
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[ 26%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/fix_deprecated.cpp.o
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[ 26%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/fix_drag.cpp.o
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[ 26%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/fix_dt_reset.cpp.o
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[ 26%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/fix_enforce2d.cpp.o
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[ 26%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/fix_external.cpp.o
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[ 26%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/fix_gravity.cpp.o
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[ 26%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/fix_group.cpp.o
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[ 26%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/fix_halt.cpp.o
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[ 26%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/fix_heat.cpp.o
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[ 26%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/fix_indent.cpp.o
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[ 26%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/fix_langevin.cpp.o
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[ 26%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/fix_lineforce.cpp.o
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[ 26%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/fix_minimize.cpp.o
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[ 26%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/fix_momentum.cpp.o
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[ 26%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/fix_move.cpp.o
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[ 27%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/fix_neigh_history.cpp.o
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[ 27%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/fix_nh.cpp.o
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[ 27%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/fix_nh_sphere.cpp.o
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[ 27%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/fix_nph.cpp.o
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[ 27%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/fix_nph_sphere.cpp.o
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[ 27%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/fix_npt.cpp.o
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[ 27%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/fix_npt_sphere.cpp.o
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[ 27%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/fix_nve.cpp.o
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[ 27%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/fix_nve_limit.cpp.o
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[ 27%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/fix_nve_noforce.cpp.o
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[ 27%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/fix_nve_sphere.cpp.o
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[ 27%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/fix_nvt.cpp.o
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[ 27%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/fix_nvt_sllod.cpp.o
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[ 27%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/fix_nvt_sphere.cpp.o
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[ 27%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/fix_planeforce.cpp.o
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[ 28%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/fix_press_berendsen.cpp.o
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[ 28%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/fix_print.cpp.o
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[ 28%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/fix_property_atom.cpp.o
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[ 28%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/fix_read_restart.cpp.o
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[ 28%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/fix_recenter.cpp.o
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[ 28%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/fix_respa.cpp.o
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[ 28%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/fix_restrain.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Dlammps_EXPORTS -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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[ 28%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/fix_setforce.cpp.o
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[ 28%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/fix_spring.cpp.o
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[ 28%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/fix_spring_chunk.cpp.o
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[ 28%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/fix_spring_rg.cpp.o
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[ 28%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/fix_spring_self.cpp.o
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[ 28%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/fix_store.cpp.o
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[ 28%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/fix_store_force.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Dlammps_EXPORTS -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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[ 28%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/fix_store_state.cpp.o
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[ 29%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/fix_temp_berendsen.cpp.o
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[ 29%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/fix_temp_csld.cpp.o
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[ 29%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/fix_temp_csvr.cpp.o
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[ 29%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/fix_temp_rescale.cpp.o
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[ 29%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/fix_tmd.cpp.o
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[ 29%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/fix_vector.cpp.o
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[ 29%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/fix_viscous.cpp.o
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[ 29%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/fix_wall.cpp.o
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[ 29%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/fix_wall_harmonic.cpp.o
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[ 29%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/fix_wall_lj1043.cpp.o
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[ 29%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/fix_wall_lj126.cpp.o
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[ 29%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/fix_wall_lj93.cpp.o
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[ 29%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/fix_wall_morse.cpp.o
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[ 29%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/fix_wall_reflect.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Dlammps_EXPORTS -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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[ 29%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/fix_wall_region.cpp.o
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[ 30%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/force.cpp.o
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[ 30%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/group.cpp.o
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[ 30%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/hashlittle.cpp.o
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/usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fPIC -o CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/hashlittle.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/src/hashlittle.cpp
[ 30%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/image.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Dlammps_EXPORTS -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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[ 30%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/imbalance.cpp.o
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[ 30%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/imbalance_group.cpp.o
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-I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/molfile -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/systems/interact -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/ivutils/include -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/h5md/include -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fPIC -o CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/imbalance_group.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/src/imbalance_group.cpp
[ 30%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/imbalance_neigh.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Dlammps_EXPORTS -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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[ 30%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/imbalance_store.cpp.o
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[ 30%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/imbalance_time.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Dlammps_EXPORTS -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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-I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/molfile -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/systems/interact -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/ivutils/include -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/h5md/include -isystem 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[ 30%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/imbalance_var.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Dlammps_EXPORTS -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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[ 30%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/improper.cpp.o
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[ 30%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/improper_deprecated.cpp.o
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[ 30%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/improper_hybrid.cpp.o
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[ 30%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/improper_zero.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Dlammps_EXPORTS -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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[ 31%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/info.cpp.o
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[ 31%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/input.cpp.o
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[ 31%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/integrate.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Dlammps_EXPORTS -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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[ 31%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/irregular.cpp.o
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-I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/molfile -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/systems/interact -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/ivutils/include -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/h5md/include -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fPIC -o CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/irregular.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/src/irregular.cpp
[ 31%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/kspace.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Dlammps_EXPORTS -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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-I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/molfile -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/systems/interact -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/ivutils/include -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/h5md/include -isystem 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[ 31%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/kspace_deprecated.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Dlammps_EXPORTS -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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[ 31%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/lammps.cpp.o
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[ 31%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/lattice.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Dlammps_EXPORTS -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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[ 31%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/library.cpp.o
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[ 31%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/lmppython.cpp.o
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[ 31%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/math_extra.cpp.o
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[ 31%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/math_special.cpp.o
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[ 31%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/memory.cpp.o
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[ 31%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/min.cpp.o
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[ 31%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/min_cg.cpp.o
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[ 32%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/min_fire.cpp.o
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[ 32%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/min_fire_old.cpp.o
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[ 32%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/min_hftn.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Dlammps_EXPORTS -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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[ 32%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/min_linesearch.cpp.o
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[ 32%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/min_quickmin.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Dlammps_EXPORTS -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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[ 32%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/min_sd.cpp.o
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[ 32%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/minimize.cpp.o
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[ 32%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/modify.cpp.o
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[ 32%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/molecule.cpp.o
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/usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fPIC -o CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/molecule.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/src/molecule.cpp
[ 32%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/nbin.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Dlammps_EXPORTS -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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[ 32%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/nbin_standard.cpp.o
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[ 32%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/neigh_list.cpp.o
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[ 32%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/neigh_request.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Dlammps_EXPORTS -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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[ 32%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/neighbor.cpp.o
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/usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fPIC -o CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/neighbor.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/src/neighbor.cpp
[ 32%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/npair.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Dlammps_EXPORTS -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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/usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fPIC -o CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/npair.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/src/npair.cpp
[ 33%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/npair_copy.cpp.o
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[ 33%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/npair_full_bin.cpp.o
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[ 33%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/npair_full_bin_atomonly.cpp.o
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[ 33%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/npair_full_bin_ghost.cpp.o
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[ 33%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/npair_full_multi.cpp.o
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[ 33%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/npair_full_nsq.cpp.o
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[ 33%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/npair_full_nsq_ghost.cpp.o
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[ 33%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/npair_half_bin_atomonly_newton.cpp.o
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[ 33%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/npair_half_bin_newtoff.cpp.o
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[ 33%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/npair_half_bin_newton.cpp.o
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[ 33%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/npair_half_multi_newtoff.cpp.o
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[ 33%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/npair_half_multi_newton_tri.cpp.o
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[ 34%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/npair_half_nsq_newtoff.cpp.o
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[ 34%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/npair_half_nsq_newtoff_ghost.cpp.o
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[ 34%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/npair_half_nsq_newton.cpp.o
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[ 34%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/npair_half_respa_bin_newtoff.cpp.o
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[ 34%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/npair_half_respa_bin_newton_tri.cpp.o
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[ 34%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/npair_half_respa_nsq_newton.cpp.o
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[ 34%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/npair_half_size_bin_newton_tri.cpp.o
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[ 34%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/npair_half_size_nsq_newtoff.cpp.o
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[ 34%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/npair_half_size_nsq_newton.cpp.o
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[ 34%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/npair_halffull_newtoff.cpp.o
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[ 34%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/npair_halffull_newton.cpp.o
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[ 35%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/npair_skip.cpp.o
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[ 35%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/npair_skip_respa.cpp.o
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[ 35%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/npair_skip_size.cpp.o
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[ 35%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/npair_skip_size_off2on.cpp.o
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[ 35%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/npair_skip_size_off2on_oneside.cpp.o
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[ 35%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/nstencil.cpp.o
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[ 35%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/nstencil_full_bin_2d.cpp.o
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[ 35%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/nstencil_full_bin_3d.cpp.o
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[ 35%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/nstencil_full_ghost_bin_2d.cpp.o
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[ 35%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/nstencil_full_ghost_bin_3d.cpp.o
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[ 35%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/nstencil_full_multi_2d.cpp.o
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[ 35%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/nstencil_full_multi_3d.cpp.o
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[ 35%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/nstencil_half_bin_2d_newtoff.cpp.o
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[ 35%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/nstencil_half_bin_2d_newton.cpp.o
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[ 36%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/nstencil_half_bin_3d_newtoff.cpp.o
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[ 36%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/nstencil_half_bin_3d_newton_tri.cpp.o
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[ 36%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/nstencil_half_multi_2d_newton_tri.cpp.o
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[ 36%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ntopo.cpp.o
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[ 36%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ntopo_angle_all.cpp.o
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[ 36%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ntopo_angle_partial.cpp.o
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[ 36%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ntopo_angle_template.cpp.o
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[ 37%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ntopo_bond_all.cpp.o
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[ 37%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ntopo_bond_partial.cpp.o
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[ 37%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ntopo_bond_template.cpp.o
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[ 37%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ntopo_dihedral_all.cpp.o
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[ 37%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ntopo_dihedral_partial.cpp.o
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[ 37%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ntopo_dihedral_template.cpp.o
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[ 37%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ntopo_improper_all.cpp.o
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[ 37%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ntopo_improper_partial.cpp.o
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[ 37%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ntopo_improper_template.cpp.o
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[ 37%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/output.cpp.o
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[ 37%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/pair.cpp.o
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[ 37%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/pair_beck.cpp.o
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[ 37%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/pair_born.cpp.o
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[ 37%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/pair_born_coul_dsf.cpp.o
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[ 37%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/pair_born_coul_wolf.cpp.o
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[ 38%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/pair_buck.cpp.o
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[ 38%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/pair_buck_coul_cut.cpp.o
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[ 38%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/pair_coul_cut.cpp.o
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[ 38%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/pair_coul_debye.cpp.o
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[ 38%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/pair_coul_dsf.cpp.o
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[ 38%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/pair_coul_streitz.cpp.o
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[ 38%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/pair_coul_wolf.cpp.o
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[ 38%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/pair_deprecated.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Dlammps_EXPORTS -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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[ 38%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/pair_dpd.cpp.o
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[ 38%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/pair_dpd_tstat.cpp.o
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[ 38%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/pair_gauss.cpp.o
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[ 38%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/pair_hybrid.cpp.o
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[ 38%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/pair_hybrid_overlay.cpp.o
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[ 38%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/pair_lj96_cut.cpp.o
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[ 38%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/pair_lj_cubic.cpp.o
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[ 39%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/pair_lj_cut.cpp.o
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[ 39%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/pair_lj_cut_coul_cut.cpp.o
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[ 39%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/pair_lj_cut_coul_debye.cpp.o
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[ 39%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/pair_lj_cut_coul_dsf.cpp.o
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[ 39%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/pair_lj_cut_coul_wolf.cpp.o
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[ 39%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/pair_lj_expand.cpp.o
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[ 39%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/pair_lj_gromacs.cpp.o
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[ 39%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/pair_lj_gromacs_coul_gromacs.cpp.o
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[ 39%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/pair_lj_smooth.cpp.o
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[ 39%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/pair_lj_smooth_linear.cpp.o
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[ 39%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/pair_mie_cut.cpp.o
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[ 39%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/pair_morse.cpp.o
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[ 39%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/pair_soft.cpp.o
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[ 39%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/pair_table.cpp.o
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[ 40%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/pair_ufm.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Dlammps_EXPORTS -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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-I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/molfile -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/systems/interact -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/ivutils/include -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/h5md/include -isystem 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[ 40%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/pair_yukawa.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Dlammps_EXPORTS -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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[ 40%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/pair_zbl.cpp.o
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[ 40%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/pair_zero.cpp.o
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[ 40%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/procmap.cpp.o
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[ 40%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/random_mars.cpp.o
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[ 40%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/random_park.cpp.o
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[ 40%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/rcb.cpp.o
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-I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF 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/usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fPIC -o CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/rcb.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/src/rcb.cpp
[ 40%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/read_data.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Dlammps_EXPORTS -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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[ 40%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/read_dump.cpp.o
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[ 40%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/read_restart.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Dlammps_EXPORTS -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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[ 40%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/reader.cpp.o
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[ 40%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/reader_native.cpp.o
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-DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE 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-I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/molfile -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/systems/interact -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/ivutils/include -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/h5md/include -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fPIC -o CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/reader_native.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/src/reader_native.cpp
[ 40%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/reader_xyz.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Dlammps_EXPORTS -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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[ 40%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/region.cpp.o
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[ 41%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/region_block.cpp.o
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[ 41%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/region_cone.cpp.o
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[ 41%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/region_cylinder.cpp.o
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[ 41%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/region_deprecated.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Dlammps_EXPORTS -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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[ 41%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/region_intersect.cpp.o
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-I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/molfile -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/systems/interact -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/ivutils/include -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/h5md/include -isystem 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[ 41%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/region_plane.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Dlammps_EXPORTS -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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[ 41%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/region_prism.cpp.o
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[ 41%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/region_sphere.cpp.o
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[ 41%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/region_union.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Dlammps_EXPORTS -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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[ 41%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/replicate.cpp.o
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/usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fPIC -o CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/replicate.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/src/replicate.cpp
[ 41%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/rerun.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Dlammps_EXPORTS -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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-I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/molfile -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/systems/interact -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/ivutils/include -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/h5md/include -isystem 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[ 41%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/reset_ids.cpp.o
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[ 41%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/respa.cpp.o
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/usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fPIC -o CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/respa.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/src/respa.cpp
[ 41%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/run.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Dlammps_EXPORTS -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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[ 41%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/set.cpp.o
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/usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fPIC -o CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/set.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/src/set.cpp
[ 42%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/special.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Dlammps_EXPORTS -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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/usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fPIC -o CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/special.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/src/special.cpp
[ 42%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/thermo.cpp.o
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[ 42%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/timer.cpp.o
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-I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF 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/usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fPIC -o CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/timer.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/src/timer.cpp
[ 42%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/universe.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Dlammps_EXPORTS -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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/usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fPIC -o CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/universe.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/src/universe.cpp
[ 42%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/update.cpp.o
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[ 42%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/utils.cpp.o
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[ 42%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/variable.cpp.o
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[ 42%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/velocity.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Dlammps_EXPORTS -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/molfile -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/systems/interact -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/ivutils/include -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/h5md/include -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fPIC -o CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/velocity.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/src/velocity.cpp
/<<BUILDDIR>>/lammps-20200303+dfsg1/src/variable.cpp: In member function 'int LAMMPS_NS::Variable::next(int, char**)':
/<<BUILDDIR>>/lammps-20200303+dfsg1/src/variable.cpp:686:13: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
686 | fscanf(fp,"%d",&nextindex);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 42%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/verlet.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Dlammps_EXPORTS -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD 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/usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fPIC -o CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/verlet.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/src/verlet.cpp
[ 42%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/write_coeff.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Dlammps_EXPORTS -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE 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-I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/molfile -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/systems/interact -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/ivutils/include -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/h5md/include -isystem 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[ 42%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/write_data.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Dlammps_EXPORTS -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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[ 42%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/write_dump.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Dlammps_EXPORTS -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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[ 42%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/write_restart.cpp.o
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[ 42%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE/compute_erotate_asphere.cpp.o
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[ 42%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE/compute_temp_asphere.cpp.o
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[ 43%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE/fix_nh_asphere.cpp.o
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[ 43%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE/fix_nph_asphere.cpp.o
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[ 43%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE/fix_npt_asphere.cpp.o
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[ 43%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE/fix_nve_asphere.cpp.o
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[ 43%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE/fix_nve_asphere_noforce.cpp.o
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[ 43%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE/fix_nve_line.cpp.o
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[ 43%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE/fix_nve_tri.cpp.o
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[ 43%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE/fix_nvt_asphere.cpp.o
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[ 43%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE/pair_gayberne.cpp.o
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[ 43%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE/pair_line_lj.cpp.o
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[ 43%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE/pair_resquared.cpp.o
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[ 43%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE/pair_tri_lj.cpp.o
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[ 43%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY/body_nparticle.cpp.o
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[ 43%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY/body_rounded_polygon.cpp.o
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[ 43%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY/body_rounded_polyhedron.cpp.o
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[ 44%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY/compute_body_local.cpp.o
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[ 44%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY/compute_temp_body.cpp.o
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[ 44%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY/fix_nh_body.cpp.o
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[ 44%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY/fix_nph_body.cpp.o
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[ 44%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY/fix_npt_body.cpp.o
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[ 44%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY/fix_nve_body.cpp.o
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[ 44%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY/fix_nvt_body.cpp.o
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[ 44%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY/fix_wall_body_polygon.cpp.o
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[ 44%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY/fix_wall_body_polyhedron.cpp.o
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[ 44%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY/pair_body_nparticle.cpp.o
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[ 44%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY/pair_body_rounded_polygon.cpp.o
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[ 44%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY/pair_body_rounded_polyhedron.cpp.o
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[ 44%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2/angle_class2.cpp.o
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[ 44%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2/bond_class2.cpp.o
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[ 44%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2/dihedral_class2.cpp.o
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[ 45%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2/pair_lj_class2_coul_long.cpp.o
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[ 45%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID/pair_brownian.cpp.o
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[ 45%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID/pair_brownian_poly.cpp.o
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[ 45%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID/pair_colloid.cpp.o
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[ 45%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID/pair_lubricate.cpp.o
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[ 45%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID/pair_lubricateU.cpp.o
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[ 45%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID/pair_lubricateU_poly.cpp.o
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[ 45%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID/pair_lubricate_poly.cpp.o
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[ 45%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID/pair_yukawa_colloid.cpp.o
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[ 45%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS/dump_atom_gz.cpp.o
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[ 45%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS/dump_cfg_gz.cpp.o
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[ 46%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS/dump_custom_gz.cpp.o
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[ 46%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS/dump_local_gz.cpp.o
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[ 46%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS/dump_xyz_gz.cpp.o
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[ 46%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL/compute_temp_cs.cpp.o
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[ 46%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL/pair_born_coul_dsf_cs.cpp.o
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[ 46%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL/pair_coul_long_cs.cpp.o
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[ 46%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL/pair_coul_wolf_cs.cpp.o
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[ 46%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL/pair_lj_cut_coul_long_cs.cpp.o
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[ 46%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE/atom_vec_dipole.cpp.o
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[ 46%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE/pair_lj_cut_dipole_long.cpp.o
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[ 46%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE/pair_lj_long_dipole_long.cpp.o
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[ 47%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR/fix_freeze.cpp.o
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[ 47%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR/fix_pour.cpp.o
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[ 47%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR/fix_wall_gran.cpp.o
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[ 47%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR/fix_wall_gran_region.cpp.o
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[ 47%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR/pair_gran_hertz_history.cpp.o
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[ 47%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR/pair_gran_hooke_history.cpp.o
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[ 47%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR/pair_granular.cpp.o
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[ 47%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE/ewald.cpp.o
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[ 47%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE/ewald_dipole.cpp.o
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[ 47%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE/ewald_dipole_spin.cpp.o
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[ 47%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE/ewald_disp.cpp.o
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[ 47%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE/fft3d.cpp.o
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[ 47%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE/fft3d_wrap.cpp.o
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[ 47%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE/fix_tune_kspace.cpp.o
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-I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/molfile -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/systems/interact -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/ivutils/include -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/h5md/include -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fPIC -o CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE/fix_tune_kspace.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE/fix_tune_kspace.cpp
[ 48%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE/gridcomm.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Dlammps_EXPORTS -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/molfile -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/systems/interact -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/ivutils/include -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/h5md/include -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fPIC -o CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE/gridcomm.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE/gridcomm.cpp
[ 48%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE/msm.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Dlammps_EXPORTS -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/molfile -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/systems/interact -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/ivutils/include -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/h5md/include -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fPIC -o CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE/msm.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE/msm.cpp
/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE/fix_tune_kspace.cpp: In member function 'virtual void LAMMPS_NS::FixTuneKspace::pre_exchange()':
/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE/fix_tune_kspace.cpp:155:35: warning: '/long' directive output may be truncated writing 5 bytes into a region of size between 1 and 64 [-Wformat-truncation=]
155 | snprintf(new_pair_style,64,"%s/long",base_pair_style);
| ^~~~~
In file included from /usr/include/stdio.h:867,
from /usr/include/c++/9/cstdio:42,
from /usr/include/c++/9/ext/string_conversions.h:43,
from /usr/include/c++/9/bits/basic_string.h:6493,
from /usr/include/c++/9/string:55,
from /usr/include/c++/9/stdexcept:39,
from /usr/include/c++/9/array:39,
from /usr/include/c++/9/tuple:39,
from /usr/include/c++/9/bits/stl_map.h:63,
from /usr/include/c++/9/map:61,
from /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx/mpicxx.h:42,
from /usr/lib/arm-linux-gnueabihf/openmpi/include/mpi.h:2868,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/src/pointers.h:25,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/src/fix.h:17,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE/fix_tune_kspace.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE/fix_tune_kspace.cpp:18:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 6 and 69 bytes into a destination of size 64
67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
68 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE/fix_tune_kspace.cpp:160:37: warning: '/msm' directive output may be truncated writing 4 bytes into a region of size between 1 and 64 [-Wformat-truncation=]
160 | snprintf(new_pair_style,64,"%s/msm",base_pair_style);
| ^~~~
In file included from /usr/include/stdio.h:867,
from /usr/include/c++/9/cstdio:42,
from /usr/include/c++/9/ext/string_conversions.h:43,
from /usr/include/c++/9/bits/basic_string.h:6493,
from /usr/include/c++/9/string:55,
from /usr/include/c++/9/stdexcept:39,
from /usr/include/c++/9/array:39,
from /usr/include/c++/9/tuple:39,
from /usr/include/c++/9/bits/stl_map.h:63,
from /usr/include/c++/9/map:61,
from /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx/mpicxx.h:42,
from /usr/lib/arm-linux-gnueabihf/openmpi/include/mpi.h:2868,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/src/pointers.h:25,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/src/fix.h:17,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE/fix_tune_kspace.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE/fix_tune_kspace.cpp:18:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 5 and 68 bytes into a destination of size 64
67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
68 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE/fix_tune_kspace.cpp:144:35: warning: '/msm' directive output may be truncated writing 4 bytes into a region of size between 1 and 64 [-Wformat-truncation=]
144 | snprintf(new_pair_style,64,"%s/msm",base_pair_style);
| ^~~~
In file included from /usr/include/stdio.h:867,
from /usr/include/c++/9/cstdio:42,
from /usr/include/c++/9/ext/string_conversions.h:43,
from /usr/include/c++/9/bits/basic_string.h:6493,
from /usr/include/c++/9/string:55,
from /usr/include/c++/9/stdexcept:39,
from /usr/include/c++/9/array:39,
from /usr/include/c++/9/tuple:39,
from /usr/include/c++/9/bits/stl_map.h:63,
from /usr/include/c++/9/map:61,
from /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx/mpicxx.h:42,
from /usr/lib/arm-linux-gnueabihf/openmpi/include/mpi.h:2868,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/src/pointers.h:25,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/src/fix.h:17,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE/fix_tune_kspace.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE/fix_tune_kspace.cpp:18:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 5 and 68 bytes into a destination of size 64
67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
68 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE/fix_tune_kspace.cpp:137:35: warning: '/long' directive output may be truncated writing 5 bytes into a region of size between 1 and 64 [-Wformat-truncation=]
137 | snprintf(new_pair_style,64,"%s/long",base_pair_style);
| ^~~~~
In file included from /usr/include/stdio.h:867,
from /usr/include/c++/9/cstdio:42,
from /usr/include/c++/9/ext/string_conversions.h:43,
from /usr/include/c++/9/bits/basic_string.h:6493,
from /usr/include/c++/9/string:55,
from /usr/include/c++/9/stdexcept:39,
from /usr/include/c++/9/array:39,
from /usr/include/c++/9/tuple:39,
from /usr/include/c++/9/bits/stl_map.h:63,
from /usr/include/c++/9/map:61,
from /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx/mpicxx.h:42,
from /usr/lib/arm-linux-gnueabihf/openmpi/include/mpi.h:2868,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/src/pointers.h:25,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/src/fix.h:17,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE/fix_tune_kspace.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE/fix_tune_kspace.cpp:18:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 6 and 69 bytes into a destination of size 64
67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
68 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE/fix_tune_kspace.cpp:130:35: warning: '/long' directive output may be truncated writing 5 bytes into a region of size between 1 and 64 [-Wformat-truncation=]
130 | snprintf(new_pair_style,64,"%s/long",base_pair_style);
| ^~~~~
In file included from /usr/include/stdio.h:867,
from /usr/include/c++/9/cstdio:42,
from /usr/include/c++/9/ext/string_conversions.h:43,
from /usr/include/c++/9/bits/basic_string.h:6493,
from /usr/include/c++/9/string:55,
from /usr/include/c++/9/stdexcept:39,
from /usr/include/c++/9/array:39,
from /usr/include/c++/9/tuple:39,
from /usr/include/c++/9/bits/stl_map.h:63,
from /usr/include/c++/9/map:61,
from /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx/mpicxx.h:42,
from /usr/lib/arm-linux-gnueabihf/openmpi/include/mpi.h:2868,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/src/pointers.h:25,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/src/fix.h:17,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE/fix_tune_kspace.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE/fix_tune_kspace.cpp:18:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 6 and 69 bytes into a destination of size 64
67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
68 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 48%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE/msm_cg.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Dlammps_EXPORTS -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/molfile -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/systems/interact -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/ivutils/include -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/h5md/include -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fPIC -o CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE/msm_cg.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE/msm_cg.cpp
[ 48%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE/pair_born_coul_long.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Dlammps_EXPORTS -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE 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[ 48%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE/pair_buck_coul_long.cpp.o
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[ 48%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE/pair_buck_coul_msm.cpp.o
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[ 48%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE/pair_buck_long_coul_long.cpp.o
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[ 48%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE/pair_coul_long.cpp.o
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[ 48%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE/pair_coul_msm.cpp.o
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[ 48%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE/pair_lj_charmm_coul_long.cpp.o
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[ 48%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE/pair_lj_charmm_coul_msm.cpp.o
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[ 48%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp.o
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[ 48%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp.o
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[ 49%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE/pair_lj_cut_coul_msm.cpp.o
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[ 49%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE/pair_lj_long_coul_long.cpp.o
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[ 49%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE/pair_lj_long_tip4p_long.cpp.o
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[ 49%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE/pair_tip4p_long.cpp.o
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[ 49%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE/pppm.cpp.o
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[ 49%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE/pppm_cg.cpp.o
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[ 49%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE/pppm_dipole.cpp.o
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[ 49%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE/pppm_dipole_spin.cpp.o
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[ 49%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE/pppm_disp.cpp.o
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[ 49%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE/pppm_disp_tip4p.cpp.o
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[ 49%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE/pppm_stagger.cpp.o
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[ 49%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE/pppm_tip4p.cpp.o
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[ 49%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE/remap.cpp.o
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[ 49%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE/remap_wrap.cpp.o
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[ 50%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY/fix_qeq_comb.cpp.o
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[ 50%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY/pair_adp.cpp.o
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[ 50%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY/pair_airebo_morse.cpp.o
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[ 50%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY/pair_atm.cpp.o
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[ 50%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY/pair_bop.cpp.o
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[ 50%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY/pair_comb.cpp.o
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[ 50%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY/pair_comb3.cpp.o
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[ 50%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY/pair_eam.cpp.o
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[ 50%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY/pair_eam_alloy.cpp.o
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[ 50%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY/pair_eam_cd.cpp.o
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[ 50%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY/pair_eam_fs.cpp.o
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[ 50%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY/pair_eim.cpp.o
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[ 50%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY/pair_gw.cpp.o
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[ 50%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY/pair_gw_zbl.cpp.o
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[ 51%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY/pair_lcbop.cpp.o
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[ 51%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY/pair_nb3b_harmonic.cpp.o
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[ 51%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY/pair_polymorphic.cpp.o
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[ 51%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY/pair_rebo.cpp.o
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[ 51%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY/pair_sw.cpp.o
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[ 51%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY/pair_tersoff.cpp.o
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[ 51%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY/pair_tersoff_mod.cpp.o
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[ 51%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY/pair_tersoff_mod_c.cpp.o
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[ 51%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY/pair_tersoff_zbl.cpp.o
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[ 51%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY/pair_vashishta.cpp.o
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[ 51%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY/pair_vashishta_table.cpp.o
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[ 51%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC/fix_atom_swap.cpp.o
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[ 51%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC/fix_bond_break.cpp.o
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[ 51%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC/fix_bond_create.cpp.o
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[ 51%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC/fix_bond_swap.cpp.o
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[ 52%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC/fix_gcmc.cpp.o
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[ 52%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC/fix_tfmc.cpp.o
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[ 52%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC/pair_dsmc.cpp.o
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[ 52%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC/compute_msd_nongauss.cpp.o
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[ 52%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC/compute_ti.cpp.o
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[ 52%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC/dump_xtc.cpp.o
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[ 52%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC/fix_deposit.cpp.o
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[ 52%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC/fix_efield.cpp.o
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[ 52%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC/fix_evaporate.cpp.o
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[ 52%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC/fix_gld.cpp.o
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[ 52%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC/fix_oneway.cpp.o
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[ 52%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC/fix_orient_bcc.cpp.o
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[ 52%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC/fix_orient_fcc.cpp.o
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[ 52%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC/fix_thermal_conductivity.cpp.o
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[ 52%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC/fix_ttm.cpp.o
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[ 53%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC/fix_viscosity.cpp.o
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[ 53%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC/pair_nm_cut.cpp.o
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[ 53%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp.o
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[ 53%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC/pair_nm_cut_coul_long.cpp.o
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[ 53%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC/xdr_compat.cpp.o
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[ 53%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE/angle_charmm.cpp.o
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[ 53%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE/angle_cosine.cpp.o
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[ 53%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE/angle_cosine_delta.cpp.o
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[ 53%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE/angle_cosine_periodic.cpp.o
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[ 53%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE/angle_cosine_squared.cpp.o
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[ 53%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE/angle_harmonic.cpp.o
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[ 53%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE/angle_table.cpp.o
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[ 53%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE/atom_vec_angle.cpp.o
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[ 53%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE/atom_vec_bond.cpp.o
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[ 53%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE/atom_vec_full.cpp.o
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[ 54%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE/atom_vec_molecular.cpp.o
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[ 54%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE/atom_vec_template.cpp.o
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[ 54%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE/bond_fene.cpp.o
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[ 54%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE/bond_fene_expand.cpp.o
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[ 54%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE/bond_gromos.cpp.o
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[ 54%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE/bond_harmonic.cpp.o
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[ 54%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE/bond_morse.cpp.o
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[ 54%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE/bond_nonlinear.cpp.o
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[ 54%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE/bond_quartic.cpp.o
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[ 54%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE/bond_table.cpp.o
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[ 54%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE/dihedral_charmm.cpp.o
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[ 54%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE/dihedral_charmmfsw.cpp.o
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[ 54%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE/dihedral_harmonic.cpp.o
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[ 54%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE/dihedral_helix.cpp.o
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[ 54%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE/dihedral_multi_harmonic.cpp.o
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[ 55%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE/dihedral_opls.cpp.o
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[ 55%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE/fix_cmap.cpp.o
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[ 55%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE/improper_cvff.cpp.o
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[ 55%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE/improper_harmonic.cpp.o
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[ 55%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE/improper_umbrella.cpp.o
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[ 55%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE/pair_hbond_dreiding_lj.cpp.o
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[ 55%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE/pair_hbond_dreiding_morse.cpp.o
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[ 55%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp.o
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[ 55%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE/pair_lj_charmm_coul_charmm_implicit.cpp.o
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[ 55%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp.o
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[ 55%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp.o
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[ 55%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE/pair_tip4p_cut.cpp.o
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[ 55%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI/atom_vec_peri.cpp.o
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[ 55%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI/compute_dilatation_atom.cpp.o
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[ 56%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI/compute_plasticity_atom.cpp.o
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[ 56%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI/fix_peri_neigh.cpp.o
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[ 56%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI/pair_peri_eps.cpp.o
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[ 56%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI/pair_peri_pmb.cpp.o
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[ 56%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI/pair_peri_ves.cpp.o
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[ 56%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS/fix_poems.cpp.o
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[ 56%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ/fix_qeq.cpp.o
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[ 56%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ/fix_qeq_fire.cpp.o
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[ 56%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ/fix_qeq_point.cpp.o
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[ 56%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ/fix_qeq_shielded.cpp.o
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[ 56%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ/fix_qeq_slater.cpp.o
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[ 56%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA/fix_event.cpp.o
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[ 57%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA/fix_event_hyper.cpp.o
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[ 57%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA/fix_event_prd.cpp.o
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[ 57%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA/fix_event_tad.cpp.o
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[ 57%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA/fix_hyper_global.cpp.o
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[ 57%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA/fix_hyper_local.cpp.o
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[ 57%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA/fix_neb.cpp.o
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[ 57%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA/hyper.cpp.o
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[ 57%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA/neb.cpp.o
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[ 57%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA/prd.cpp.o
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[ 57%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA/tad.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Dlammps_EXPORTS -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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[ 57%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA/temper.cpp.o
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[ 57%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA/verlet_split.cpp.o
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[ 57%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID/compute_erotate_rigid.cpp.o
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[ 58%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID/compute_ke_rigid.cpp.o
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[ 58%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID/compute_rigid_local.cpp.o
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[ 58%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID/fix_ehex.cpp.o
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[ 58%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID/fix_rattle.cpp.o
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[ 58%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID/fix_rigid.cpp.o
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[ 58%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID/fix_rigid_nh.cpp.o
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[ 58%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID/fix_rigid_nh_small.cpp.o
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[ 58%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID/fix_rigid_nph.cpp.o
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[ 58%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID/fix_rigid_nph_small.cpp.o
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[ 58%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID/fix_rigid_npt.cpp.o
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[ 58%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID/fix_rigid_npt_small.cpp.o
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[ 58%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID/fix_rigid_nve.cpp.o
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[ 58%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID/fix_rigid_nve_small.cpp.o
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[ 58%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID/fix_rigid_nvt.cpp.o
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[ 58%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID/fix_rigid_nvt_small.cpp.o
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[ 59%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID/fix_rigid_small.cpp.o
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[ 59%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID/fix_shake.cpp.o
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[ 59%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK/fix_append_atoms.cpp.o
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-I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/molfile -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/systems/interact -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/ivutils/include -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/h5md/include -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fPIC -o CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK/fix_append_atoms.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK/fix_append_atoms.cpp
[ 59%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK/fix_msst.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Dlammps_EXPORTS -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/molfile -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/systems/interact -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/ivutils/include -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/h5md/include -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fPIC -o CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK/fix_msst.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK/fix_msst.cpp
/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID/fix_rigid_small.cpp: In member function 'virtual void LAMMPS_NS::FixRigidSmall::write_restart_file(char*)':
/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID/fix_rigid_small.cpp:2580:60: warning: '%s' directive output may be truncated writing up to 127 bytes into a region of size 93 [-Wformat-truncation=]
2580 | snprintf(str,128,"Cannot open fix rigid restart file %s",outfile);
| ^~ ~~~~~~~
In file included from /usr/include/stdio.h:867,
from /usr/include/c++/9/cstdio:42,
from /usr/include/c++/9/ext/string_conversions.h:43,
from /usr/include/c++/9/bits/basic_string.h:6493,
from /usr/include/c++/9/string:55,
from /usr/include/c++/9/stdexcept:39,
from /usr/include/c++/9/array:39,
from /usr/include/c++/9/tuple:39,
from /usr/include/c++/9/bits/stl_map.h:63,
from /usr/include/c++/9/map:61,
from /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx/mpicxx.h:42,
from /usr/lib/arm-linux-gnueabihf/openmpi/include/mpi.h:2868,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/src/pointers.h:25,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/src/fix.h:17,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID/fix_rigid_small.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID/fix_rigid_small.cpp:14:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 36 and 163 bytes into a destination of size 128
67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
68 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 59%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK/fix_nphug.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Dlammps_EXPORTS -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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[ 59%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK/fix_wall_piston.cpp.o
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[ 59%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP/compute_sna_atom.cpp.o
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[ 59%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP/compute_snad_atom.cpp.o
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[ 59%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP/compute_snap.cpp.o
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[ 59%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP/compute_snav_atom.cpp.o
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[ 59%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP/pair_snap.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Dlammps_EXPORTS -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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[ 59%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP/sna.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Dlammps_EXPORTS -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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[ 59%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD/fix_srd.cpp.o
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[ 59%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD/fix_wall_srd.cpp.o
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[ 59%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM/fix_store_kim.cpp.o
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[ 60%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM/kim_init.cpp.o
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[ 60%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM/kim_interactions.cpp.o
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[ 60%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM/kim_param.cpp.o
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[ 60%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM/kim_query.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Dlammps_EXPORTS -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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[ 60%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM/kim_units.cpp.o
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[ 60%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM/pair_kim.cpp.o
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[ 60%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON/fix_python_invoke.cpp.o
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[ 60%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON/fix_python_move.cpp.o
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-DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD 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-I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/molfile -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/systems/interact -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/ivutils/include -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/h5md/include -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fPIC -o CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON/fix_python_move.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON/fix_python_move.cpp
In file included from /usr/include/c++/9/map:60,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM/kim_units.cpp:59:
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = {anonymous}::units; _Val = std::pair<const {anonymous}::units, double>; _KeyOfValue = std::_Select1st<std::pair<const {anonymous}::units, double> >; _Compare = std::less<{anonymous}::units>; _Alloc = std::allocator<std::pair<const {anonymous}::units, double> >]':
/usr/include/c++/9/bits/stl_tree.h:2187:5: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
2187 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const {anonymous}::units&>, std::tuple<>}; _Key = {anonymous}::units; _Val = std::pair<const {anonymous}::units, double>; _KeyOfValue = std::_Select1st<std::pair<const {anonymous}::units, double> >; _Compare = std::less<{anonymous}::units>; _Alloc = std::allocator<std::pair<const {anonymous}::units, double> >]':
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM/kim_units.cpp:59:
/usr/include/c++/9/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = {anonymous}::units; _Tp = double; _Compare = std::less<{anonymous}::units>; _Alloc = std::allocator<std::pair<const {anonymous}::units, double> >]':
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/c++/9/map:60,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM/kim_units.cpp:59:
/usr/include/c++/9/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<{anonymous}::units&&>, std::tuple<>}; _Key = {anonymous}::units; _Val = std::pair<const {anonymous}::units, double>; _KeyOfValue = std::_Select1st<std::pair<const {anonymous}::units, double> >; _Compare = std::less<{anonymous}::units>; _Alloc = std::allocator<std::pair<const {anonymous}::units, double> >]':
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM/kim_units.cpp:59:
/usr/include/c++/9/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = {anonymous}::units; _Tp = double; _Compare = std::less<{anonymous}::units>; _Alloc = std::allocator<std::pair<const {anonymous}::units, double> >]':
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
[ 60%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON/pair_python.cpp.o
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[ 60%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON/python_impl.cpp.o
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-I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/molfile -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/systems/interact -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/ivutils/include -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/h5md/include -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fPIC -o CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON/python_impl.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON/python_impl.cpp
[ 60%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO/dump_atom_mpiio.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Dlammps_EXPORTS -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE 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/usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fPIC -o CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO/dump_atom_mpiio.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO/dump_atom_mpiio.cpp
/usr/include/c++/9/bits/stl_map.h: In function 'double {anonymous}::get_pressure_conversion_factor({anonymous}::units, {anonymous}::units)':
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h: In function 'double {anonymous}::get_efield_conversion_factor({anonymous}::units, {anonymous}::units)':
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
[ 60%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO/dump_cfg_mpiio.cpp.o
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/usr/include/c++/9/bits/stl_map.h: In function 'double {anonymous}::get_distance_conversion_factor({anonymous}::units, {anonymous}::units)':
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h: In function 'double {anonymous}::get_dipole_conversion_factor({anonymous}::units, {anonymous}::units)':
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h: In function 'double {anonymous}::get_mass_conversion_factor({anonymous}::units, {anonymous}::units)':
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
[ 60%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO/dump_custom_mpiio.cpp.o
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/usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fPIC -o CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO/dump_custom_mpiio.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO/dump_custom_mpiio.cpp
/usr/include/c++/9/bits/stl_map.h: In function 'double {anonymous}::get_density_conversion_factor({anonymous}::units, {anonymous}::units)':
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h: In function 'double {anonymous}::get_time_conversion_factor({anonymous}::units, {anonymous}::units)':
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
[ 60%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO/dump_xyz_mpiio.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Dlammps_EXPORTS -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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[ 60%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO/restart_mpiio.cpp.o
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[ 61%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI/compute_voronoi_atom.cpp.o
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[ 61%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC/fix_atc.cpp.o
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[ 61%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD/atom_vec_wavepacket.cpp.o
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/usr/include/c++/9/bits/stl_map.h: In function 'double {anonymous}::get_viscosity_conversion_factor({anonymous}::units, {anonymous}::units)':
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h: In function 'int lammps_unit_conversion(const string&, const string&, const string&, double&)':
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<{anonymous}::units, std::pair<const {anonymous}::units, double>, std::_Select1st<std::pair<const {anonymous}::units, double> >, std::less<{anonymous}::units>, std::allocator<std::pair<const {anonymous}::units, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const {anonymous}::units, double> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
[ 61%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD/fix_nve_awpmd.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Dlammps_EXPORTS -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF 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/usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fPIC -o CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD/fix_nve_awpmd.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD/fix_nve_awpmd.cpp
[ 61%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD/pair_awpmd_cut.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Dlammps_EXPORTS -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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/usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fPIC -o CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD/pair_awpmd_cut.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD/pair_awpmd_cut.cpp
[ 61%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS/compute_pressure_bocs.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Dlammps_EXPORTS -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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[ 61%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS/fix_bocs.cpp.o
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-I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/molfile -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/systems/interact -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/ivutils/include -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/h5md/include -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fPIC -o CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS/fix_bocs.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS/fix_bocs.cpp
[ 61%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA/bond_oxdna2_fene.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Dlammps_EXPORTS -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/molfile -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/systems/interact -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/ivutils/include -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/h5md/include -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fPIC -o CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA/bond_oxdna2_fene.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA/bond_oxdna2_fene.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/systems/interact/TCP/wpmd.h:145,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD/pair_awpmd_cut.cpp:39:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Vector_Nt<double, 3>&}; _Tp = Vector_Nt<double, 3>; _Alloc = std::allocator<Vector_Nt<double, 3> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<Vector_Nt<double, 3> >::iterator' {aka '__gnu_cxx::__normal_iterator<Vector_Nt<double, 3>*, std::vector<Vector_Nt<double, 3> > >'} changed in GCC 7.1
[ 61%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA/bond_oxdna_fene.cpp.o
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-I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/molfile -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/systems/interact -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/ivutils/include -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/h5md/include -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fPIC -o CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA/bond_oxdna_fene.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA/bond_oxdna_fene.cpp
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/systems/interact/TCP/wpmd.h:145,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD/pair_awpmd_cut.cpp:39:
/usr/include/c++/9/bits/stl_vector.h: In member function 'virtual void LAMMPS_NS::PairAWPMDCut::compute(int, int)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Vector_Nt<double, 3>*, std::vector<Vector_Nt<double, 3> > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[ 61%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA/bond_oxrna2_fene.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Dlammps_EXPORTS -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/molfile -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/systems/interact -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/ivutils/include -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/h5md/include -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fPIC -o CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA/bond_oxrna2_fene.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA/bond_oxrna2_fene.cpp
[ 61%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA/fix_nve_dot.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Dlammps_EXPORTS -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/molfile -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/systems/interact -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/ivutils/include -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/h5md/include -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fPIC -o CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA/fix_nve_dot.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA/fix_nve_dot.cpp
[ 61%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA/fix_nve_dotc_langevin.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Dlammps_EXPORTS -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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[ 61%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp.o
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[ 61%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA/pair_oxdna2_dh.cpp.o
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[ 61%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA/pair_oxdna2_excv.cpp.o
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[ 62%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp.o
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[ 62%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp.o
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[ 62%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp.o
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[ 62%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp.o
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[ 62%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp.o
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[ 62%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA/pair_oxrna2_dh.cpp.o
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[ 62%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA/pair_oxrna2_excv.cpp.o
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[ 62%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA/pair_oxrna2_hbond.cpp.o
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[ 62%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA/pair_oxrna2_stk.cpp.o
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[ 62%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA/pair_oxrna2_xstk.cpp.o
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[ 62%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO/atom_vec_edpd.cpp.o
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[ 62%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO/atom_vec_mdpd.cpp.o
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[ 62%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO/atom_vec_tdpd.cpp.o
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[ 62%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO/compute_edpd_temp_atom.cpp.o
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[ 62%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO/compute_tdpd_cc_atom.cpp.o
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[ 63%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO/fix_edpd_source.cpp.o
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[ 63%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO/fix_mvv_dpd.cpp.o
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[ 63%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO/fix_mvv_edpd.cpp.o
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[ 63%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO/fix_mvv_tdpd.cpp.o
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[ 63%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO/fix_tdpd_source.cpp.o
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[ 63%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO/pair_edpd.cpp.o
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[ 63%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO/pair_mdpd.cpp.o
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[ 63%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO/pair_mdpd_rhosum.cpp.o
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[ 63%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO/pair_tdpd.cpp.o
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[ 63%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK/angle_sdk.cpp.o
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[ 63%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK/pair_lj_sdk.cpp.o
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[ 63%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp.o
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[ 63%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK/pair_lj_sdk_coul_msm.cpp.o
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[ 63%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION/compute_saed.cpp.o
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[ 63%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION/compute_xrd.cpp.o
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[ 64%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION/fix_saed_vtk.cpp.o
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[ 64%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD/atom_vec_dpd.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Dlammps_EXPORTS -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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[ 64%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD/compute_dpd.cpp.o
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[ 64%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD/compute_dpd_atom.cpp.o
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-I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/molfile -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/systems/interact -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/ivutils/include -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/h5md/include -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fPIC -o CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD/compute_dpd_atom.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD/compute_dpd_atom.cpp
/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION/fix_saed_vtk.cpp: In member function 'void LAMMPS_NS::FixSAEDVTK::invoke_vector(LAMMPS_NS::bigint)':
/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION/fix_saed_vtk.cpp:431:57: warning: '%s' directive output may be truncated writing up to 127 bytes into a region of size 98 [-Wformat-truncation=]
431 | snprintf(str,128,"Cannot open fix saed/vtk file %s",nName);
| ^~ ~~~~~
In file included from /usr/include/stdio.h:867,
from /usr/include/c++/9/cstdio:42,
from /usr/include/c++/9/ext/string_conversions.h:43,
from /usr/include/c++/9/bits/basic_string.h:6493,
from /usr/include/c++/9/string:55,
from /usr/include/c++/9/stdexcept:39,
from /usr/include/c++/9/array:39,
from /usr/include/c++/9/tuple:39,
from /usr/include/c++/9/bits/stl_map.h:63,
from /usr/include/c++/9/map:61,
from /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx/mpicxx.h:42,
from /usr/lib/arm-linux-gnueabihf/openmpi/include/mpi.h:2868,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/src/pointers.h:25,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/src/fix.h:17,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION/fix_saed_vtk.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION/fix_saed_vtk.cpp:19:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 31 and 158 bytes into a destination of size 128
67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
68 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION/fix_saed_vtk.cpp: In member function 'void LAMMPS_NS::FixSAEDVTK::options(int, char**)':
/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION/fix_saed_vtk.cpp:558:59: warning: '%s' directive output may be truncated writing up to 127 bytes into a region of size 98 [-Wformat-truncation=]
558 | snprintf(str,128,"Cannot open fix saed/vtk file %s",nName);
| ^~ ~~~~~
In file included from /usr/include/stdio.h:867,
from /usr/include/c++/9/cstdio:42,
from /usr/include/c++/9/ext/string_conversions.h:43,
from /usr/include/c++/9/bits/basic_string.h:6493,
from /usr/include/c++/9/string:55,
from /usr/include/c++/9/stdexcept:39,
from /usr/include/c++/9/array:39,
from /usr/include/c++/9/tuple:39,
from /usr/include/c++/9/bits/stl_map.h:63,
from /usr/include/c++/9/map:61,
from /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx/mpicxx.h:42,
from /usr/lib/arm-linux-gnueabihf/openmpi/include/mpi.h:2868,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/src/pointers.h:25,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/src/fix.h:17,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION/fix_saed_vtk.h:23,
from /<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION/fix_saed_vtk.cpp:19:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 31 and 158 bytes into a destination of size 128
67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
68 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 64%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD/fix_dpd_energy.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Dlammps_EXPORTS -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/molfile -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/systems/interact -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/ivutils/include -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/h5md/include -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fPIC -o CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD/fix_dpd_energy.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD/fix_dpd_energy.cpp
[ 64%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD/fix_eos_cv.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Dlammps_EXPORTS -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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[ 64%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD/fix_eos_table.cpp.o
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[ 64%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD/fix_eos_table_rx.cpp.o
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[ 64%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD/fix_rx.cpp.o
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[ 64%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD/fix_shardlow.cpp.o
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[ 64%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD/nbin_ssa.cpp.o
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[ 64%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD/npair_half_bin_newton_ssa.cpp.o
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[ 64%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD/nstencil_half_bin_2d_newton_ssa.cpp.o
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[ 64%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD/nstencil_half_bin_3d_newton_ssa.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Dlammps_EXPORTS -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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[ 64%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD/pair_dpd_fdt.cpp.o
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[ 65%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD/pair_dpd_fdt_energy.cpp.o
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[ 65%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD/pair_exp6_rx.cpp.o
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[ 65%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD/pair_multi_lucy.cpp.o
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-I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/molfile -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/systems/interact -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/ivutils/include -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/h5md/include -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fPIC -o CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD/pair_multi_lucy.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD/pair_multi_lucy.cpp
/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD/pair_multi_lucy.cpp: In member function 'void LAMMPS_NS::PairMultiLucy::read_table(LAMMPS_NS::PairMultiLucy::Table*, char*, char*)':
/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD/pair_multi_lucy.cpp:370:47: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
370 | for (int i = 0; i < tb->ninput; i++) fgets(line,MAXLINE,fp);
| ~~~~~^~~~~~~~~~~~~~~~~
[ 65%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD/pair_multi_lucy_rx.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Dlammps_EXPORTS -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE 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-I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/molfile -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/systems/interact -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/ivutils/include -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/h5md/include -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fPIC -o CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD/pair_multi_lucy_rx.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD/pair_multi_lucy_rx.cpp
[ 65%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD/pair_table_rx.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Dlammps_EXPORTS -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF 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[ 65%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE/compute_temp_drude.cpp.o
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-I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/molfile -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/systems/interact -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/ivutils/include -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/h5md/include -isystem 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[ 65%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE/fix_drude.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Dlammps_EXPORTS -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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[ 65%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE/fix_drude_transform.cpp.o
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[ 65%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE/fix_langevin_drude.cpp.o
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[ 65%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE/pair_lj_cut_thole_long.cpp.o
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[ 65%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE/pair_thole.cpp.o
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[ 65%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF/atom_vec_electron.cpp.o
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[ 65%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF/compute_ke_atom_eff.cpp.o
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[ 65%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF/compute_ke_eff.cpp.o
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[ 65%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF/compute_temp_deform_eff.cpp.o
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[ 66%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF/compute_temp_eff.cpp.o
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[ 66%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF/compute_temp_region_eff.cpp.o
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[ 66%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF/fix_langevin_eff.cpp.o
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[ 66%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF/fix_nh_eff.cpp.o
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[ 66%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF/fix_nph_eff.cpp.o
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[ 66%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF/fix_npt_eff.cpp.o
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[ 66%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF/fix_nve_eff.cpp.o
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[ 66%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF/fix_nvt_eff.cpp.o
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[ 66%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF/fix_nvt_sllod_eff.cpp.o
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[ 66%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF/fix_temp_rescale_eff.cpp.o
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[ 66%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF/pair_eff_cut.cpp.o
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[ 66%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP/compute_fep.cpp.o
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[ 66%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP/fix_adapt_fep.cpp.o
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[ 66%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP/pair_coul_cut_soft.cpp.o
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[ 67%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP/pair_coul_long_soft.cpp.o
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[ 67%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp.o
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[ 67%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP/pair_lj_class2_coul_cut_soft.cpp.o
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[ 67%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP/pair_lj_class2_coul_long_soft.cpp.o
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[ 67%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP/pair_lj_class2_soft.cpp.o
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[ 67%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp.o
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[ 67%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp.o
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[ 67%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp.o
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[ 67%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP/pair_morse_soft.cpp.o
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[ 67%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP/pair_tip4p_long_soft.cpp.o
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[ 67%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD/dump_h5md.cpp.o
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[ 67%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB/fix_lb_fluid.cpp.o
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[ 67%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB/fix_lb_momentum.cpp.o
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[ 67%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB/fix_lb_pc.cpp.o
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[ 68%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB/fix_lb_rigid_pc_sphere.cpp.o
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[ 68%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB/fix_lb_viscous.cpp.o
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[ 68%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD/fix_manifoldforce.cpp.o
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[ 68%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD/fix_nve_manifold_rattle.cpp.o
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[ 68%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD/fix_nvt_manifold_rattle.cpp.o
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[ 68%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD/manifold_cylinder.cpp.o
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[ 68%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD/manifold_cylinder_dent.cpp.o
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[ 68%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD/manifold_dumbbell.cpp.o
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[ 68%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD/manifold_ellipsoid.cpp.o
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[ 68%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD/manifold_factory.cpp.o
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[ 68%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD/manifold_gaussian_bump.cpp.o
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[ 68%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD/manifold_plane.cpp.o
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[ 68%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD/manifold_plane_wiggle.cpp.o
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[ 68%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD/manifold_spine.cpp.o
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[ 68%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD/manifold_thylakoid.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Dlammps_EXPORTS -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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/usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fPIC -o CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD/manifold_thylakoid.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD/manifold_thylakoid.cpp
[ 69%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD/manifold_thylakoid_shared.cpp.o
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[ 69%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD/manifold_torus.cpp.o
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[ 69%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC/meam_dens_final.cpp.o
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/usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fPIC -o CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC/meam_dens_final.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC/meam_dens_final.cpp
/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD/manifold_thylakoid.cpp: In member function 'virtual void LAMMPS_NS::user_manifold::manifold_thylakoid::checkup()':
/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD/manifold_thylakoid.cpp:62:30: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'std::vector<LAMMPS_NS::user_manifold::thyla_part*>::size_type' {aka 'unsigned int'} [-Wformat=]
62 | fprintf(screen,"I have %ld parts. They are:\n", parts.size());
| ~~^ ~~~~~~~~~~~~
| | |
| long int std::vector<LAMMPS_NS::user_manifold::thyla_part*>::size_type {aka unsigned int}
| %d
[ 69%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC/meam_dens_init.cpp.o
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-I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/molfile -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/systems/interact -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/ivutils/include -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/h5md/include -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fPIC -o CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC/meam_dens_init.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC/meam_dens_init.cpp
[ 69%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC/meam_force.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Dlammps_EXPORTS -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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[ 69%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC/meam_funcs.cpp.o
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[ 69%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC/meam_impl.cpp.o
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[ 69%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC/meam_setup_done.cpp.o
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[ 69%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC/meam_setup_global.cpp.o
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[ 69%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC/meam_setup_param.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Dlammps_EXPORTS -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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[ 69%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC/pair_meamc.cpp.o
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[ 69%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT/mgpt_linalg.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Dlammps_EXPORTS -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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/usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fPIC -o CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT/mgpt_linalg.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT/mgpt_linalg.cpp
[ 69%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT/mgpt_readpot.cpp.o
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/usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fPIC -o CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT/mgpt_readpot.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT/mgpt_readpot.cpp
/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT/mgpt_readpot.cpp: In member function 'void potdata::readpot(const char*, const char*, double)':
/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT/mgpt_readpot.cpp:187:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
187 | fgets(line,sizeof(line),in);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT/mgpt_readpot.cpp:203:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
203 | fgets(line,sizeof(line),in);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT/mgpt_readpot.cpp:246:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
246 | fgets(line,sizeof(line),in);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT/mgpt_readpot.cpp:306:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
306 | fgets(line,sizeof(line),in);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT/mgpt_readpot.cpp:329:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
329 | fgets(line,sizeof(line),in);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT/mgpt_readpot.cpp:331:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
331 | fgets(line,sizeof(line),in);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT/mgpt_readpot.cpp:334:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
334 | fgets(line,sizeof(line),in);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT/mgpt_readpot.cpp:343:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
343 | fgets(line,sizeof(line),in);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT/mgpt_readpot.cpp:345:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
345 | fgets(line,sizeof(line),in);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT/mgpt_readpot.cpp:358:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
358 | fgets(line,sizeof(line),in);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT/mgpt_readpot.cpp: In function 'void getparmindata(const char*, int*, double*, double*, double*)':
/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT/mgpt_readpot.cpp:109:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
109 | fgets(line,sizeof(line),in);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT/mgpt_readpot.cpp:119:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
119 | fgets(line,sizeof(line),in);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT/mgpt_readpot.cpp:123:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
123 | fgets(line,sizeof(line),in);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~
[ 69%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT/mgpt_splinetab.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Dlammps_EXPORTS -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/molfile -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/systems/interact -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/ivutils/include -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/h5md/include -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fPIC -o CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT/mgpt_splinetab.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT/mgpt_splinetab.cpp
[ 69%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT/pair_mgpt.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Dlammps_EXPORTS -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF 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/usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fPIC -o CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT/pair_mgpt.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT/pair_mgpt.cpp
[ 70%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC/angle_cosine_shift.cpp.o
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[ 70%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC/angle_cosine_shift_exp.cpp.o
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[ 70%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC/angle_dipole.cpp.o
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[ 70%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC/angle_fourier.cpp.o
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[ 70%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC/angle_fourier_simple.cpp.o
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[ 70%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC/angle_quartic.cpp.o
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[ 70%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC/bond_harmonic_shift.cpp.o
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[ 70%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC/bond_harmonic_shift_cut.cpp.o
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[ 70%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC/compute_ackland_atom.cpp.o
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[ 70%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC/compute_basal_atom.cpp.o
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[ 70%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC/compute_cnp_atom.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Dlammps_EXPORTS -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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-I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/molfile -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/systems/interact -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/ivutils/include -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/h5md/include -isystem 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[ 70%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC/compute_entropy_atom.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Dlammps_EXPORTS -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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[ 70%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC/compute_gyration_shape.cpp.o
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[ 70%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC/compute_gyration_shape_chunk.cpp.o
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[ 70%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC/compute_hma.cpp.o
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[ 71%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC/compute_momentum.cpp.o
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[ 71%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC/compute_pressure_cylinder.cpp.o
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[ 71%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC/compute_pressure_grem.cpp.o
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[ 71%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC/compute_stress_mop.cpp.o
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[ 71%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC/compute_stress_mop_profile.cpp.o
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[ 71%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC/compute_temp_rotate.cpp.o
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[ 71%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC/dihedral_cosine_shift_exp.cpp.o
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/usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fPIC -o CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC/dihedral_cosine_shift_exp.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC/dihedral_cosine_shift_exp.cpp
[ 71%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC/dihedral_fourier.cpp.o
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[ 71%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC/dihedral_nharmonic.cpp.o
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[ 71%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC/dihedral_quadratic.cpp.o
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[ 71%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC/dihedral_spherical.cpp.o
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[ 71%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC/dihedral_table.cpp.o
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[ 71%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC/dihedral_table_cut.cpp.o
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[ 71%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC/fix_addtorque.cpp.o
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[ 71%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC/fix_ave_correlate_long.cpp.o
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[ 72%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC/fix_bond_react.cpp.o
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[ 72%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC/fix_electron_stopping.cpp.o
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[ 72%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC/fix_ffl.cpp.o
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[ 72%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC/fix_filter_corotate.cpp.o
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[ 72%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC/fix_flow_gauss.cpp.o
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[ 72%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC/fix_gle.cpp.o
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[ 72%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC/fix_grem.cpp.o
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[ 72%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC/fix_imd.cpp.o
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[ 72%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC/fix_ipi.cpp.o
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[ 72%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC/fix_npt_cauchy.cpp.o
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[ 72%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC/fix_nvk.cpp.o
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[ 72%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC/fix_pimd.cpp.o
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[ 72%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC/fix_propel_self.cpp.o
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[ 72%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC/fix_rhok.cpp.o
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[ 72%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC/fix_smd.cpp.o
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[ 73%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC/fix_srp.cpp.o
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[ 73%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC/fix_ti_spring.cpp.o
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[ 73%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC/fix_ttm_mod.cpp.o
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[ 73%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC/fix_wall_ees.cpp.o
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[ 73%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC/fix_wall_reflect_stochastic.cpp.o
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[ 73%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC/fix_wall_region_ees.cpp.o
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[ 73%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC/improper_cossq.cpp.o
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[ 73%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC/improper_distance.cpp.o
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[ 73%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC/improper_fourier.cpp.o
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[ 73%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC/improper_ring.cpp.o
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[ 73%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC/pair_agni.cpp.o
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[ 73%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC/pair_buck_mdf.cpp.o
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[ 73%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC/pair_cosine_squared.cpp.o
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[ 73%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC/pair_coul_diel.cpp.o
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[ 73%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC/pair_coul_shield.cpp.o
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[ 74%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC/pair_drip.cpp.o
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[ 74%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC/pair_e3b.cpp.o
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[ 74%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC/pair_edip.cpp.o
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[ 74%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC/pair_edip_multi.cpp.o
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[ 74%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC/pair_extep.cpp.o
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[ 74%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC/pair_gauss_cut.cpp.o
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[ 74%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC/pair_ilp_graphene_hbn.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Dlammps_EXPORTS -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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[ 74%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC/pair_kolmogorov_crespi_full.cpp.o
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[ 74%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC/pair_kolmogorov_crespi_z.cpp.o
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[ 74%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC/pair_lebedeva_z.cpp.o
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[ 74%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC/pair_lennard_mdf.cpp.o
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[ 74%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC/pair_list.cpp.o
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[ 74%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC/pair_lj_expand_coul_long.cpp.o
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[ 74%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC/pair_lj_mdf.cpp.o
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[ 74%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC/pair_lj_sf_dipole_sf.cpp.o
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[ 75%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC/pair_local_density.cpp.o
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[ 75%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC/pair_meam_spline.cpp.o
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[ 75%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC/pair_meam_sw_spline.cpp.o
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-I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/molfile -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/systems/interact -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/ivutils/include -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/h5md/include -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fPIC -o CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC/pair_meam_sw_spline.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC/pair_meam_sw_spline.cpp
[ 75%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC/pair_mesocnt.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Dlammps_EXPORTS -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/molfile -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/systems/interact -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/ivutils/include -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/h5md/include -isystem 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[ 75%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC/pair_momb.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Dlammps_EXPORTS -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE 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-I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/molfile -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/systems/interact -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/ivutils/include -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/h5md/include -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fPIC -o CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC/pair_momb.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC/pair_momb.cpp
/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC/pair_mesocnt.cpp: In member function 'void LAMMPS_NS::PairMesoCNT::read_data(FILE*, double**, double&, double&, double&, double&, int)':
/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC/pair_mesocnt.cpp:902:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
902 | fgets(line,MAXLINE,fp);
| ~~~~~^~~~~~~~~~~~~~~~~
[ 75%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC/pair_morse_smooth_linear.cpp.o
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/usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fPIC -o CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC/pair_morse_smooth_linear.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC/pair_morse_smooth_linear.cpp
[ 75%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC/pair_srp.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Dlammps_EXPORTS -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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[ 75%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC/pair_tersoff_table.cpp.o
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[ 75%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC/temper_grem.cpp.o
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[ 75%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC/temper_npt.cpp.o
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[ 75%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF/angle_class2_p6.cpp.o
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[ 75%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF/angle_cosine_buck6d.cpp.o
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[ 75%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF/improper_inversion_harmonic.cpp.o
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[ 75%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp.o
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[ 76%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp.o
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[ 76%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE/dump_molfile.cpp.o
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[ 76%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE/molfile_interface.cpp.o
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[ 76%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE/reader_molfile.cpp.o
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[ 76%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF/dump_netcdf.cpp.o
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[ 76%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF/dump_netcdf_mpiio.cpp.o
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[ 76%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON/dynamical_matrix.cpp.o
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[ 76%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON/fix_phonon.cpp.o
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[ 76%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON/third_order.cpp.o
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[ 76%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB/fix_qbmsst.cpp.o
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[ 76%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB/fix_qtb.cpp.o
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[ 76%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD/atom_vec_smd.cpp.o
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-I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/molfile -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/systems/interact -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/ivutils/include -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/h5md/include -isystem 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[ 76%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD/compute_smd_contact_radius.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Dlammps_EXPORTS -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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/usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fPIC -o CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD/compute_smd_contact_radius.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD/compute_smd_contact_radius.cpp
[ 76%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD/compute_smd_damage.cpp.o
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[ 76%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD/compute_smd_hourglass_error.cpp.o
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[ 77%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD/compute_smd_internal_energy.cpp.o
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[ 77%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD/compute_smd_plastic_strain.cpp.o
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[ 77%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD/compute_smd_plastic_strain_rate.cpp.o
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[ 77%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD/compute_smd_rho.cpp.o
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[ 77%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD/compute_smd_tlsph_defgrad.cpp.o
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[ 77%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD/compute_smd_tlsph_dt.cpp.o
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[ 77%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD/compute_smd_tlsph_num_neighs.cpp.o
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[ 77%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD/compute_smd_tlsph_shape.cpp.o
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[ 77%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD/compute_smd_tlsph_strain.cpp.o
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[ 77%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD/compute_smd_tlsph_strain_rate.cpp.o
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[ 77%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD/compute_smd_tlsph_stress.cpp.o
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[ 77%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD/compute_smd_triangle_vertices.cpp.o
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[ 77%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD/compute_smd_ulsph_effm.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Dlammps_EXPORTS -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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/usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fPIC -o CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD/compute_smd_ulsph_effm.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD/compute_smd_ulsph_effm.cpp
[ 77%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD/compute_smd_ulsph_num_neighs.cpp.o
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[ 77%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD/compute_smd_ulsph_strain.cpp.o
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[ 78%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD/compute_smd_ulsph_strain_rate.cpp.o
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[ 78%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD/compute_smd_ulsph_stress.cpp.o
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[ 78%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD/compute_smd_vol.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Dlammps_EXPORTS -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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/usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fPIC -o CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD/compute_smd_vol.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD/compute_smd_vol.cpp
[ 78%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD/fix_smd_adjust_dt.cpp.o
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[ 78%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD/fix_smd_integrate_tlsph.cpp.o
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[ 78%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD/fix_smd_integrate_ulsph.cpp.o
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[ 78%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD/fix_smd_move_triangulated_surface.cpp.o
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[ 78%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD/fix_smd_setvel.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Dlammps_EXPORTS -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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[ 78%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD/fix_smd_tlsph_reference_configuration.cpp.o
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[ 78%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD/fix_smd_wall_surface.cpp.o
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[ 78%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD/pair_smd_hertz.cpp.o
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[ 78%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD/pair_smd_tlsph.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Dlammps_EXPORTS -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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-I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD 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-I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/molfile -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/systems/interact -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/ivutils/include -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/h5md/include -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fPIC -o CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD/pair_smd_tlsph.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD/pair_smd_tlsph.cpp
[ 78%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD/pair_smd_triangulated_surface.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Dlammps_EXPORTS -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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/usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fPIC -o CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD/pair_smd_triangulated_surface.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD/pair_smd_triangulated_surface.cpp
[ 78%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD/pair_smd_ulsph.cpp.o
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-I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/molfile -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/systems/interact -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/ivutils/include -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/h5md/include -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fPIC -o CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD/pair_smd_ulsph.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD/pair_smd_ulsph.cpp
[ 78%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD/smd_material_models.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Dlammps_EXPORTS -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/molfile -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/systems/interact -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/ivutils/include -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/h5md/include -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fPIC -o CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD/smd_material_models.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD/smd_material_models.cpp
[ 79%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Dlammps_EXPORTS -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE 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-I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/molfile -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/systems/interact -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/ivutils/include -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/h5md/include -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fPIC -o CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp
/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp: In member function 'virtual void LAMMPS_NS::PairSMTBQ::read_file(char*)':
/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:434:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
434 | fgets(ptr,MAXLINE,fp);
| ~~~~~^~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:437:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
437 | fgets(ptr,MAXLINE,fp);
| ~~~~~^~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:488:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
488 | fgets(ptr,MAXLINE,fp); if (verbose) printf ("%s",ptr);
| ~~~~~^~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:492:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
492 | fgets( ptr, MAXLINE, fp);
| ~~~~~^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:500:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
500 | fgets( ptr, MAXLINE, fp);
| ~~~~~^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:509:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
509 | fgets( ptr, MAXLINE, fp);
| ~~~~~^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:527:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
527 | fgets( ptr, MAXLINE, fp);
| ~~~~~^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:541:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
541 | fgets( ptr, MAXLINE, fp);
| ~~~~~^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:564:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
564 | fgets(ptr,MAXLINE,fp); if (verbose) printf ("%s",ptr);
| ~~~~~^~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:567:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
567 | fgets( ptr, MAXLINE, fp);
| ~~~~~^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:620:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
620 | fgets( ptr, MAXLINE, fp);
| ~~~~~^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:632:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
632 | fgets( ptr, MAXLINE, fp);
| ~~~~~^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:654:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
654 | fgets( ptr, MAXLINE, fp);
| ~~~~~^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:667:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
667 | fgets( ptr, MAXLINE, fp);
| ~~~~~^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:674:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
674 | fgets( ptr, MAXLINE, fp);
| ~~~~~^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:694:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
694 | fgets(ptr,MAXLINE,fp);
| ~~~~~^~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:697:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
697 | fgets( ptr, MAXLINE, fp);
| ~~~~~^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:707:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
707 | fgets( ptr, MAXLINE, fp);
| ~~~~~^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:718:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
718 | fgets( ptr, MAXLINE, fp);
| ~~~~~^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:721:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
721 | fgets( ptr, MAXLINE, fp);
| ~~~~~^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:726:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
726 | fgets( ptr, MAXLINE, fp);
| ~~~~~^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:734:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
734 | fgets( ptr, MAXLINE, fp);
| ~~~~~^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:737:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
737 | fgets( ptr, MAXLINE, fp);
| ~~~~~^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:744:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
744 | fgets( ptr, MAXLINE, fp);
| ~~~~~^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:747:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
747 | fgets( ptr, MAXLINE, fp);
| ~~~~~^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:757:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
757 | fgets( ptr, MAXLINE, fp);
| ~~~~~^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:760:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
760 | fgets( ptr, MAXLINE, fp);
| ~~~~~^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:765:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
765 | fgets( ptr, MAXLINE, fp);
| ~~~~~^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:791:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
791 | fgets( ptr, MAXLINE, fp);
| ~~~~~^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:794:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
794 | fgets( ptr, MAXLINE, fp);
| ~~~~~^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:802:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
802 | fgets( ptr, MAXLINE, fp);
| ~~~~~^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:812:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
812 | fgets( ptr, MAXLINE, fp);
| ~~~~~^~~~~~~~~~~~~~~~~~~
[ 79%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH/atom_vec_meso.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Dlammps_EXPORTS -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/molfile -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/systems/interact -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/ivutils/include -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/h5md/include -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fPIC -o CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH/atom_vec_meso.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH/atom_vec_meso.cpp
[ 79%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH/compute_meso_e_atom.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Dlammps_EXPORTS -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE 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[ 79%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH/compute_meso_rho_atom.cpp.o
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[ 79%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH/compute_meso_t_atom.cpp.o
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[ 79%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH/fix_meso.cpp.o
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[ 79%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH/fix_meso_stationary.cpp.o
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[ 79%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH/pair_sph_heatconduction.cpp.o
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[ 79%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH/pair_sph_idealgas.cpp.o
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[ 79%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH/pair_sph_lj.cpp.o
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[ 79%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH/pair_sph_rhosum.cpp.o
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[ 79%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH/pair_sph_taitwater.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Dlammps_EXPORTS -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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/usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fPIC -o CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH/pair_sph_taitwater.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH/pair_sph_taitwater.cpp
[ 79%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH/pair_sph_taitwater_morris.cpp.o
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[ 79%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY/compute_force_tally.cpp.o
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[ 79%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY/compute_heat_flux_tally.cpp.o
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[ 80%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY/compute_pe_mol_tally.cpp.o
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[ 80%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY/compute_pe_tally.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Dlammps_EXPORTS -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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[ 80%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY/compute_stress_tally.cpp.o
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[ 80%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF/compute_pressure_uef.cpp.o
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[ 80%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF/compute_temp_uef.cpp.o
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[ 80%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF/dump_cfg_uef.cpp.o
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-I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/molfile -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/systems/interact -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/ivutils/include -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/h5md/include -isystem 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[ 80%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF/fix_nh_uef.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Dlammps_EXPORTS -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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[ 80%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF/fix_npt_uef.cpp.o
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[ 80%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF/fix_nvt_uef.cpp.o
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[ 80%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF/uef_utils.cpp.o
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[ 80%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK/dump_vtk.cpp.o
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-I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/molfile -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/systems/interact -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/ivutils/include -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/h5md/include -isystem 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[ 80%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/thr_data.cpp.o
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[ 80%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/thr_omp.cpp.o
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[ 80%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/fix_omp.cpp.o
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[ 80%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/fix_nh_omp.cpp.o
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[ 81%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/fix_nh_sphere_omp.cpp.o
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[ 81%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/domain_omp.cpp.o
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[ 81%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/angle_class2_omp.cpp.o
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[ 81%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/angle_charmm_omp.cpp.o
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[ 81%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/angle_cosine_omp.cpp.o
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[ 81%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/angle_cosine_delta_omp.cpp.o
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[ 81%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/angle_cosine_periodic_omp.cpp.o
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[ 81%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/angle_cosine_squared_omp.cpp.o
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[ 81%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/angle_harmonic_omp.cpp.o
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[ 81%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/angle_table_omp.cpp.o
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[ 81%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/angle_sdk_omp.cpp.o
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[ 81%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/angle_cosine_shift_exp_omp.cpp.o
[ 81%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/angle_cosine_shift_omp.cpp.o
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[ 81%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/angle_dipole_omp.cpp.o
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[ 81%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/angle_fourier_omp.cpp.o
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[ 82%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/angle_fourier_simple_omp.cpp.o
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[ 82%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/angle_quartic_omp.cpp.o
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[ 82%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/bond_class2_omp.cpp.o
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[ 82%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/bond_fene_omp.cpp.o
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[ 82%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/bond_fene_expand_omp.cpp.o
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[ 82%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/bond_gromos_omp.cpp.o
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[ 82%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/bond_harmonic_omp.cpp.o
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[ 82%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/bond_morse_omp.cpp.o
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[ 82%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/bond_nonlinear_omp.cpp.o
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[ 82%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/bond_quartic_omp.cpp.o
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[ 82%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/bond_table_omp.cpp.o
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[ 82%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/bond_harmonic_shift_omp.cpp.o
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[ 82%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/bond_harmonic_shift_cut_omp.cpp.o
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[ 82%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/dihedral_class2_omp.cpp.o
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[ 82%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/dihedral_charmm_omp.cpp.o
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[ 83%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/dihedral_harmonic_omp.cpp.o
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[ 83%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/dihedral_helix_omp.cpp.o
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[ 83%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/dihedral_multi_harmonic_omp.cpp.o
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[ 83%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/dihedral_opls_omp.cpp.o
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[ 83%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/dihedral_cosine_shift_exp_omp.cpp.o
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[ 83%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/dihedral_fourier_omp.cpp.o
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[ 83%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/dihedral_nharmonic_omp.cpp.o
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[ 83%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/dihedral_quadratic_omp.cpp.o
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[ 83%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/dihedral_table_omp.cpp.o
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[ 83%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/fix_gravity_omp.cpp.o
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[ 83%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/fix_neigh_history_omp.cpp.o
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[ 83%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/fix_nph_omp.cpp.o
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[ 83%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/fix_nph_sphere_omp.cpp.o
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[ 83%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/fix_npt_omp.cpp.o
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[ 83%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/fix_npt_sphere_omp.cpp.o
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[ 84%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/fix_nve_omp.cpp.o
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[ 84%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/fix_nve_sphere_omp.cpp.o
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[ 84%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/fix_nvt_omp.cpp.o
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[ 84%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/fix_nvt_sllod_omp.cpp.o
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[ 84%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/fix_nvt_sphere_omp.cpp.o
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[ 84%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/fix_nph_asphere_omp.cpp.o
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[ 84%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/fix_npt_asphere_omp.cpp.o
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[ 84%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/fix_nvt_asphere_omp.cpp.o
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[ 84%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/fix_qeq_comb_omp.cpp.o
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[ 84%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/fix_peri_neigh_omp.cpp.o
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[ 84%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/fix_rigid_omp.cpp.o
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[ 84%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/fix_rigid_nph_omp.cpp.o
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[ 84%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/fix_rigid_npt_omp.cpp.o
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[ 84%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/fix_rigid_nve_omp.cpp.o
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[ 85%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/fix_rigid_nvt_omp.cpp.o
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[ 85%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/fix_rigid_small_omp.cpp.o
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[ 85%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/improper_class2_omp.cpp.o
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[ 85%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/improper_cvff_omp.cpp.o
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[ 85%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/improper_harmonic_omp.cpp.o
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[ 85%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/improper_umbrella_omp.cpp.o
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[ 85%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/improper_cossq_omp.cpp.o
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[ 85%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/improper_fourier_omp.cpp.o
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[ 85%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/improper_ring_omp.cpp.o
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[ 85%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/respa_omp.cpp.o
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[ 85%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/ewald_omp.cpp.o
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[ 85%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/msm_omp.cpp.o
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[ 85%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/msm_cg_omp.cpp.o
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[ 85%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pppm_omp.cpp.o
[ 85%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pppm_cg_omp.cpp.o
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[ 86%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pppm_disp_omp.cpp.o
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[ 86%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pppm_disp_tip4p_omp.cpp.o
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[ 86%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pppm_tip4p_omp.cpp.o
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[ 86%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/npair_full_bin_omp.cpp.o
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[ 86%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/npair_full_bin_atomonly_omp.cpp.o
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[ 86%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/npair_full_bin_ghost_omp.cpp.o
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[ 86%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/npair_full_multi_omp.cpp.o
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[ 86%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/npair_full_nsq_omp.cpp.o
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[ 86%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/npair_full_nsq_ghost_omp.cpp.o
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[ 86%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/npair_half_bin_atomonly_newton_omp.cpp.o
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[ 86%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/npair_half_bin_newtoff_omp.cpp.o
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[ 86%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/npair_half_bin_newtoff_ghost_omp.cpp.o
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[ 86%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/npair_half_bin_newton_omp.cpp.o
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[ 86%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/npair_half_bin_newton_tri_omp.cpp.o
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[ 86%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/npair_half_multi_newtoff_omp.cpp.o
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[ 87%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/npair_half_multi_newton_omp.cpp.o
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[ 87%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/npair_half_nsq_newton_omp.cpp.o
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[ 87%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/npair_half_respa_bin_newtoff_omp.cpp.o
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[ 87%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/npair_half_respa_bin_newton_omp.cpp.o
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[ 87%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/npair_half_respa_bin_newton_tri_omp.cpp.o
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[ 87%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/npair_half_respa_nsq_newtoff_omp.cpp.o
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[ 87%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/npair_half_respa_nsq_newton_omp.cpp.o
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[ 87%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/npair_half_size_bin_newtoff_omp.cpp.o
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[ 87%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/npair_half_size_bin_newton_omp.cpp.o
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[ 87%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/npair_half_size_nsq_newtoff_omp.cpp.o
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[ 87%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/npair_half_size_nsq_newton_omp.cpp.o
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[ 88%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/npair_halffull_newtoff_omp.cpp.o
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[ 88%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/npair_halffull_newton_omp.cpp.o
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[ 88%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_beck_omp.cpp.o
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[ 88%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_born_omp.cpp.o
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[ 88%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_born_coul_wolf_omp.cpp.o
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[ 88%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_buck_omp.cpp.o
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[ 88%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_buck_coul_cut_omp.cpp.o
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[ 88%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_coul_cut_omp.cpp.o
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[ 88%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_coul_debye_omp.cpp.o
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[ 88%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_coul_dsf_omp.cpp.o
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[ 88%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_coul_wolf_omp.cpp.o
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[ 88%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_dpd_omp.cpp.o
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[ 88%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_dpd_tstat_omp.cpp.o
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[ 88%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_gauss_omp.cpp.o
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[ 88%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_lj96_cut_omp.cpp.o
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[ 89%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_lj_cubic_omp.cpp.o
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[ 89%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_lj_cut_omp.cpp.o
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[ 89%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_lj_cut_coul_cut_omp.cpp.o
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[ 89%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_lj_cut_coul_debye_omp.cpp.o
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[ 89%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_lj_cut_coul_dsf_omp.cpp.o
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[ 89%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_lj_cut_coul_wolf_omp.cpp.o
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[ 89%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_lj_expand_omp.cpp.o
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[ 89%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_lj_gromacs_omp.cpp.o
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[ 89%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_lj_gromacs_coul_gromacs_omp.cpp.o
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[ 89%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_lj_smooth_omp.cpp.o
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[ 89%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_lj_smooth_linear_omp.cpp.o
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[ 89%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_morse_omp.cpp.o
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[ 89%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_soft_omp.cpp.o
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[ 89%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_table_omp.cpp.o
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[ 89%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_ufm_omp.cpp.o
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[ 90%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_yukawa_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Dlammps_EXPORTS -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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-I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/molfile -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/systems/interact -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/ivutils/include -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/h5md/include -isystem 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[ 90%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_zbl_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Dlammps_EXPORTS -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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[ 90%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_gayberne_omp.cpp.o
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[ 90%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_resquared_omp.cpp.o
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[ 90%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_lj_class2_omp.cpp.o
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[ 90%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_lj_class2_coul_cut_omp.cpp.o
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[ 90%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_lj_class2_coul_long_omp.cpp.o
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[ 90%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_brownian_omp.cpp.o
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[ 90%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_brownian_poly_omp.cpp.o
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[ 90%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_colloid_omp.cpp.o
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[ 90%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_lubricate_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Dlammps_EXPORTS -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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[ 90%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_lubricate_poly_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Dlammps_EXPORTS -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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[ 90%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_yukawa_colloid_omp.cpp.o
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[ 90%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_lj_cut_dipole_cut_omp.cpp.o
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[ 90%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_gran_hertz_history_omp.cpp.o
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[ 91%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_gran_hooke_omp.cpp.o
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[ 91%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_gran_hooke_history_omp.cpp.o
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[ 91%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_born_coul_long_omp.cpp.o
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[ 91%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_born_coul_msm_omp.cpp.o
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[ 91%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_buck_coul_long_omp.cpp.o
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[ 91%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_buck_coul_msm_omp.cpp.o
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[ 91%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_buck_long_coul_long_omp.cpp.o
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[ 91%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_coul_long_omp.cpp.o
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[ 91%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_coul_msm_omp.cpp.o
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[ 91%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_lj_charmm_coul_long_omp.cpp.o
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[ 91%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_lj_charmm_coul_msm_omp.cpp.o
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[ 91%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_lj_cut_coul_long_omp.cpp.o
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[ 91%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_lj_cut_coul_msm_omp.cpp.o
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[ 91%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp.o
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[ 91%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_lj_long_coul_long_omp.cpp.o
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[ 92%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp.o
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[ 92%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_tip4p_long_omp.cpp.o
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[ 92%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_adp_omp.cpp.o
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[ 92%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_airebo_omp.cpp.o
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[ 92%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_airebo_morse_omp.cpp.o
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[ 92%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_comb_omp.cpp.o
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[ 92%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_eam_omp.cpp.o
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[ 92%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_eam_alloy_omp.cpp.o
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[ 92%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_eam_cd_omp.cpp.o
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[ 92%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_eam_fs_omp.cpp.o
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[ 92%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_eim_omp.cpp.o
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[ 92%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_rebo_omp.cpp.o
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[ 92%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_sw_omp.cpp.o
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[ 92%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_tersoff_omp.cpp.o
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[ 92%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_tersoff_mod_omp.cpp.o
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[ 93%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_tersoff_mod_c_omp.cpp.o
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[ 93%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_tersoff_zbl_omp.cpp.o
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[ 93%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_vashishta_omp.cpp.o
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[ 93%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_vashishta_table_omp.cpp.o
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[ 93%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_nm_cut_omp.cpp.o
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[ 93%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_nm_cut_coul_cut_omp.cpp.o
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[ 93%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_nm_cut_coul_long_omp.cpp.o
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[ 93%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_hbond_dreiding_lj_omp.cpp.o
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[ 93%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_hbond_dreiding_morse_omp.cpp.o
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[ 93%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_lj_charmm_coul_charmm_omp.cpp.o
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[ 93%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_lj_charmm_coul_charmm_implicit_omp.cpp.o
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[ 93%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_lj_cut_tip4p_cut_omp.cpp.o
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[ 93%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_tip4p_cut_omp.cpp.o
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[ 94%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_peri_pmb_omp.cpp.o
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[ 94%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_lj_sdk_omp.cpp.o
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[ 94%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_lj_sdk_coul_long_omp.cpp.o
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[ 94%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_lj_sdk_coul_msm_omp.cpp.o
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[ 94%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp.o
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[ 94%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_coul_cut_soft_omp.cpp.o
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[ 94%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_coul_long_soft_omp.cpp.o
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[ 94%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_lj_charmm_coul_long_soft_omp.cpp.o
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[ 94%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_lj_cut_coul_cut_soft_omp.cpp.o
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[ 94%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_lj_cut_coul_long_soft_omp.cpp.o
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[ 94%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_lj_cut_soft_omp.cpp.o
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[ 94%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_tip4p_long_soft_omp.cpp.o
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[ 94%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_agni_omp.cpp.o
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[ 94%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_coul_diel_omp.cpp.o
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[ 95%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_edip_omp.cpp.o
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[ 95%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_gauss_cut_omp.cpp.o
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[ 95%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_lj_sf_dipole_sf_omp.cpp.o
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[ 95%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_meam_spline_omp.cpp.o
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[ 95%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_morse_smooth_linear_omp.cpp.o
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[ 95%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/pair_tersoff_table_omp.cpp.o
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[ 95%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/fix_nh_asphere_omp.cpp.o
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[ 95%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP/fix_rigid_nh_omp.cpp.o
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[ 95%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT/pair_lj_cut_opt.cpp.o
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[ 95%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT/pair_morse_opt.cpp.o
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[ 95%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT/pair_ufm_opt.cpp.o
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[ 96%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT/pair_eam_opt.cpp.o
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[ 96%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT/pair_eam_fs_opt.cpp.o
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[ 96%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU/fix_gpu.cpp.o
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[ 96%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU/pppm_gpu.cpp.o
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[ 96%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU/pair_beck_gpu.cpp.o
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[ 96%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU/pair_born_gpu.cpp.o
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[ 96%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU/pair_buck_gpu.cpp.o
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[ 96%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU/pair_buck_coul_cut_gpu.cpp.o
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[ 96%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU/pair_coul_cut_gpu.cpp.o
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[ 96%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU/pair_coul_debye_gpu.cpp.o
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[ 96%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU/pair_coul_dsf_gpu.cpp.o
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[ 96%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU/pair_dpd_gpu.cpp.o
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[ 96%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU/pair_dpd_tstat_gpu.cpp.o
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[ 97%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU/pair_gauss_gpu.cpp.o
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[ 97%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU/pair_lj96_cut_gpu.cpp.o
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[ 97%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU/pair_lj_cut_gpu.cpp.o
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[ 97%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU/pair_lj_cut_coul_debye_gpu.cpp.o
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[ 97%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU/pair_morse_gpu.cpp.o
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[ 97%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU/pair_table_gpu.cpp.o
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[ 97%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU/pair_ufm_gpu.cpp.o
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[ 97%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU/pair_yukawa_gpu.cpp.o
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[ 98%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU/pair_zbl_gpu.cpp.o
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[ 98%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU/pair_gayberne_gpu.cpp.o
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[ 98%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU/pair_resquared_gpu.cpp.o
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[ 98%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU/pair_lj_class2_gpu.cpp.o
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[ 98%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU/pair_lj_class2_coul_long_gpu.cpp.o
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[ 98%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU/pair_colloid_gpu.cpp.o
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[ 98%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU/pair_yukawa_colloid_gpu.cpp.o
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[ 98%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU/pair_born_coul_wolf_cs_gpu.cpp.o
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[ 98%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU/pair_coul_long_cs_gpu.cpp.o
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[ 98%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU/pair_lj_cut_dipole_cut_gpu.cpp.o
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[ 98%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU/pair_lj_cut_dipole_long_gpu.cpp.o
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[ 98%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU/pair_buck_coul_long_gpu.cpp.o
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[ 98%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU/pair_coul_long_gpu.cpp.o
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[ 99%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU/pair_lj_charmm_coul_long_gpu.cpp.o
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[ 99%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU/pair_lj_cut_coul_long_gpu.cpp.o
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[ 99%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU/pair_lj_cut_coul_msm_gpu.cpp.o
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[ 99%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU/pair_lj_cut_tip4p_long_gpu.cpp.o
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[ 99%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU/pair_eam_gpu.cpp.o
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[ 99%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU/pair_eam_alloy_gpu.cpp.o
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[ 99%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU/pair_eam_fs_gpu.cpp.o
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-I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/molfile -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/systems/interact -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/ivutils/include -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/h5md/include -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fPIC -o CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU/pair_eam_fs_gpu.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU/pair_eam_fs_gpu.cpp
[ 99%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU/pair_sw_gpu.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Dlammps_EXPORTS -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-BOCS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGDNA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MESO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-CGSDK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DIFFRACTION -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DPD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-DRUDE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-EFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-FEP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-H5MD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-LB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MANIFOLD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MEAMC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MGPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOFFF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-MOLFILE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-NETCDF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-PHONON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-QTB -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SMTBQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-SPH -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-TALLY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-UEF -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-VTK -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-OMP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/OPT -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU -I/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/molfile -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/poems -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/atc -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/systems/interact -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/awpmd/ivutils/include -I/<<BUILDDIR>>/lammps-20200303+dfsg1/lib/h5md/include -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fPIC -o CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU/pair_sw_gpu.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU/pair_sw_gpu.cpp
/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU/pair_eam_fs_gpu.cpp: In member function 'virtual void LAMMPS_NS::PairEAMFSGPU::read_file(char*)':
/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU/pair_eam_fs_gpu.cpp:380:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
380 | fgets(line,MAXLINE,fptr);
| ~~~~~^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU/pair_eam_fs_gpu.cpp:381:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
381 | fgets(line,MAXLINE,fptr);
| ~~~~~^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU/pair_eam_fs_gpu.cpp:382:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
382 | fgets(line,MAXLINE,fptr);
| ~~~~~^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU/pair_eam_fs_gpu.cpp:383:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
383 | fgets(line,MAXLINE,fptr);
| ~~~~~^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU/pair_eam_fs_gpu.cpp:408:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
408 | fgets(line,MAXLINE,fptr);
| ~~~~~^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU/pair_eam_fs_gpu.cpp:430:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
430 | fgets(line,MAXLINE,fptr);
| ~~~~~^~~~~~~~~~~~~~~~~~~
[ 99%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU/pair_tersoff_gpu.cpp.o
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-DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE 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[ 99%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU/pair_tersoff_mod_gpu.cpp.o
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[ 99%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU/pair_tersoff_zbl_gpu.cpp.o
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[ 99%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU/pair_vashishta_gpu.cpp.o
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[ 99%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU/pair_lj_sdk_gpu.cpp.o
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[ 99%] Building CXX object CMakeFiles/lammps.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GPU/pair_lj_sdk_coul_long_gpu.cpp.o
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[100%] Linking CXX shared library liblammps.so
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/usr/lib/arm-linux-gnueabihf/libvtkInteractionWidgets-7.1.so.7.1p.1 /usr/lib/arm-linux-gnueabihf/libvtkFiltersHybrid-7.1.so.7.1p.1 /usr/lib/arm-linux-gnueabihf/libvtkImagingGeneral-7.1.so.7.1p.1 /usr/lib/arm-linux-gnueabihf/libvtkImagingSources-7.1.so.7.1p.1 /usr/lib/arm-linux-gnueabihf/libvtkFiltersModeling-7.1.so.7.1p.1 /usr/lib/arm-linux-gnueabihf/libvtkInteractionStyle-7.1.so.7.1p.1 /usr/lib/arm-linux-gnueabihf/libvtkFiltersExtraction-7.1.so.7.1p.1 /usr/lib/arm-linux-gnueabihf/libvtkFiltersStatistics-7.1.so.7.1p.1 /usr/lib/arm-linux-gnueabihf/libvtkImagingFourier-7.1.so.7.1p.1 /usr/lib/arm-linux-gnueabihf/libvtkalglib-7.1.so.7.1p.1 /usr/lib/arm-linux-gnueabihf/libvtkImagingHybrid-7.1.so.7.1p.1 /usr/lib/arm-linux-gnueabihf/libvtkIOImage-7.1.so.7.1p.1 /usr/lib/arm-linux-gnueabihf/libvtkDICOMParser-7.1.so.7.1p.1 /usr/lib/arm-linux-gnueabihf/libvtkmetaio-7.1.so.7.1p.1 /usr/lib/arm-linux-gnueabihf/libvtkRenderingAnnotation-7.1.so.7.1p.1 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/usr/lib/arm-linux-gnueabihf/libvtkCommonExecutionModel-7.1.so.7.1p.1 /usr/lib/arm-linux-gnueabihf/libvtkCommonDataModel-7.1.so.7.1p.1 /usr/lib/arm-linux-gnueabihf/libvtkCommonTransforms-7.1.so.7.1p.1 /usr/lib/arm-linux-gnueabihf/libvtkCommonMisc-7.1.so.7.1p.1 /usr/lib/arm-linux-gnueabihf/libvtkCommonMath-7.1.so.7.1p.1 /usr/lib/arm-linux-gnueabihf/libvtkCommonSystem-7.1.so.7.1p.1 -lfreetype /usr/lib/arm-linux-gnueabihf/libvtkCommonCore-7.1.so.7.1p.1 /usr/lib/arm-linux-gnueabihf/libvtksys-7.1.so.7.1p.1 -ldl -llapack -lblas /usr/lib/arm-linux-gnueabihf/hdf5/serial/libhdf5.so -lpthread -lz -lsz -ldl -lm -lOpenCL
/usr/bin/cmake -E cmake_symlink_library liblammps.so.0 liblammps.so.0 liblammps.so
make[3]: Leaving directory '/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build'
[100%] Built target lammps
make -f CMakeFiles/lmp.dir/build.make CMakeFiles/lmp.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build'
cd /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/lammps-20200303+dfsg1/cmake /<<BUILDDIR>>/lammps-20200303+dfsg1/cmake /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/CMakeFiles/lmp.dir/DependInfo.cmake --color=
Scanning dependencies of target lmp
make[3]: Leaving directory '/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build'
make -f CMakeFiles/lmp.dir/build.make CMakeFiles/lmp.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build'
[100%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/main.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DvtkDomainsChemistry_AUTOINIT="1(vtkDomainsChemistryOpenGL2)" -DvtkFiltersCore_AUTOINIT="1(vtkFiltersParallelDIY2)" -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL2)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLICOpenGL2_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL2)" -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python3.8 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/usr/include/kim-api -I/usr/lib/arm-linux-gnueabihf/kim-api/mod -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/ASPHERE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/BODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CLASS2 -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COLLOID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/COMPRESS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/CORESHELL -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/DIPOLE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/GRANULAR -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KSPACE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MANYBODY -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MISC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MOLECULE -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PERI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/POEMS -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/QEQ -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/REPLICA -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/RIGID -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SHOCK -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SNAP -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/SRD -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/KIM -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/PYTHON -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/MPIIO -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/VORONOI -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-ATC -I/<<BUILDDIR>>/lammps-20200303+dfsg1/src/USER-AWPMD 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/usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-20200303+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -fPIC -o CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-20200303+dfsg1/src/main.cpp.o -c /<<BUILDDIR>>/lammps-20200303+dfsg1/src/main.cpp
[100%] Linking CXX executable lmp
/usr/bin/cmake -E cmake_link_script CMakeFiles/lmp.dir/link.txt --verbose=1
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/usr/lib/arm-linux-gnueabihf/libvtkCommonColor-7.1.so.7.1p.1 /usr/lib/arm-linux-gnueabihf/libvtkFiltersGeometry-7.1.so.7.1p.1 /usr/lib/arm-linux-gnueabihf/libvtkFiltersSources-7.1.so.7.1p.1 /usr/lib/arm-linux-gnueabihf/libvtkFiltersGeneral-7.1.so.7.1p.1 /usr/lib/arm-linux-gnueabihf/libvtkCommonComputationalGeometry-7.1.so.7.1p.1 /usr/lib/arm-linux-gnueabihf/libvtkFiltersCore-7.1.so.7.1p.1 /usr/lib/arm-linux-gnueabihf/libvtkCommonExecutionModel-7.1.so.7.1p.1 /usr/lib/arm-linux-gnueabihf/libvtkCommonDataModel-7.1.so.7.1p.1 /usr/lib/arm-linux-gnueabihf/libvtkCommonTransforms-7.1.so.7.1p.1 /usr/lib/arm-linux-gnueabihf/libvtkCommonMisc-7.1.so.7.1p.1 /usr/lib/arm-linux-gnueabihf/libvtkCommonMath-7.1.so.7.1p.1 /usr/lib/arm-linux-gnueabihf/libvtkCommonSystem-7.1.so.7.1p.1 -lfreetype /usr/lib/arm-linux-gnueabihf/libvtkWrappingJava-7.1.so.7.1p.1 /usr/lib/arm-linux-gnueabihf/libvtkCommonCore-7.1.so.7.1p.1 /usr/lib/arm-linux-gnueabihf/libvtksys-7.1.so.7.1p.1 -ldl -lcurl -Wl,-rpath,/usr/lib/arm-linux-gnueabihf -lkim-api -lm libpoems.a libatc.a libawpmd.a -llapack -lblas libh5md.a /usr/lib/arm-linux-gnueabihf/hdf5/serial/libhdf5.so -lpthread -lz -lsz -ldl -lm libgpu.a -lOpenCL
make[3]: Leaving directory '/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build'
[100%] Built target lmp
make[2]: Leaving directory '/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build'
/usr/bin/cmake -E cmake_progress_start /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/CMakeFiles 0
make[1]: Leaving directory '/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build'
debian/rules override_dh_auto_test-arch
make[1]: Entering directory '/<<BUILDDIR>>/lammps-20200303+dfsg1'
mkdir test; cp examples/crack/* test/
cd test; /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/lmp < in.crack
LAMMPS (3 Mar 2020)
Lattice spacing in x,y,z = 1.11428 1.92998 1.11428
Created orthogonal box = (0 0 -0.278569) to (111.428 77.1994 0.278569)
1 by 1 by 1 MPI processor grid
Created 8141 atoms
create_atoms CPU = 0.00561708 secs
302 atoms in group lower
302 atoms in group upper
604 atoms in group boundary
7537 atoms in group mobile
841 atoms in group leftupper
841 atoms in group leftlower
Setting atom values ...
841 settings made for type
Setting atom values ...
841 settings made for type
Setting atom values ...
302 settings made for type
Setting atom values ...
302 settings made for type
WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:485)
Neighbor list info ...
update every 1 steps, delay 5 steps, check yes
max neighbors/atom: 2000, page size: 100000
master list distance cutoff = 2.8
ghost atom cutoff = 2.8
binsize = 1.4, bins = 80 56 1
1 neighbor lists, perpetual/occasional/extra = 1 0 0
(1) pair lj/cut, perpetual
attributes: half, newton on
pair build: half/bin/atomonly/newton
stencil: half/bin/2d/newton
bin: standard
Setting up Verlet run ...
Unit style : lj
Current step : 0
Time step : 0.003
Per MPI rank memory allocation (min/avg/max) = 2.8 | 2.8 | 2.8 Mbytes
Step Temp E_pair E_mol TotEng Press Volume
0 0.065651733 -3.2595015 0 -3.1987287 -0.036239172 8605.5917
200 0.060086376 -3.2531936 0 -3.1975725 -0.23125026 8638.8101
400 0.060533553 -3.2509973 0 -3.1949623 -0.4305406 8679.2464
600 0.06082965 -3.2466949 0 -3.1903858 -0.6028531 8716.7569
800 0.061677224 -3.2413215 0 -3.1842278 -0.7482749 8756.226
1000 0.062383731 -3.2349273 0 -3.1771796 -0.87425132 8793.1116
1200 0.063709246 -3.2276094 0 -3.1686347 -0.98020161 8828.8863
1400 0.065404552 -3.2196608 0 -3.1591168 -1.0695384 8866.4893
1600 0.067579602 -3.2110378 0 -3.1484804 -1.1456387 8900.6772
1800 0.069324241 -3.2018536 0 -3.1376812 -1.2020999 8933.017
2000 0.071014927 -3.1921108 0 -3.1263733 -1.2430105 8963.9853
2200 0.072992881 -3.1818701 0 -3.1143017 -1.2701297 9004.4136
2400 0.075000723 -3.1712313 0 -3.1018043 -1.2830866 9034.9991
2600 0.076843477 -3.1601004 0 -3.0889675 -1.27924 9072.1325
2800 0.078671706 -3.1487747 0 -3.0759495 -1.2659604 9103.9526
3000 0.080713586 -3.1373277 0 -3.0626123 -1.2440673 9134.552
3200 0.08309469 -3.1260242 0 -3.0491047 -1.214547 9169.0003
3400 0.085424766 -3.1146623 0 -3.0355859 -1.1839326 9206.909
3600 0.087396485 -3.1029493 0 -3.0220477 -1.143412 9233.783
3800 0.089007987 -3.090822 0 -3.0084286 -1.1000791 9259.0348
4000 0.089813071 -3.0794078 0 -2.9962692 -1.062847 9281.82
4200 0.08584753 -3.0668559 0 -2.9873882 -1.037972 9308.8113
4400 0.086197517 -3.0559678 0 -2.9761761 -1.028843 9328.9666
4600 0.086766447 -3.0437627 0 -2.9634443 -1.0208785 9361.9925
4800 0.088195149 -3.0328502 0 -2.9512093 -1.0272063 9395.6122
5000 0.089415266 -3.0228825 0 -2.9401122 -1.0215336 9436.1637
Loop time of 21.2008 on 1 procs for 5000 steps with 8141 atoms
Performance: 61129.843 tau/day, 235.840 timesteps/s
99.8% CPU use with 1 MPI tasks x no OpenMP threads
MPI task timing breakdown:
Section | min time | avg time | max time |%varavg| %total
---------------------------------------------------------------
Pair | 17.22 | 17.22 | 17.22 | 0.0 | 81.22
Neigh | 0.93573 | 0.93573 | 0.93573 | 0.0 | 4.41
Comm | 0.045268 | 0.045268 | 0.045268 | 0.0 | 0.21
Output | 0.0050197 | 0.0050197 | 0.0050197 | 0.0 | 0.02
Modify | 2.3561 | 2.3561 | 2.3561 | 0.0 | 11.11
Other | | 0.6386 | | | 3.01
Nlocal: 8141 ave 8141 max 8141 min
Histogram: 1 0 0 0 0 0 0 0 0 0
Nghost: 0 ave 0 max 0 min
Histogram: 1 0 0 0 0 0 0 0 0 0
Neighs: 71389 ave 71389 max 71389 min
Histogram: 1 0 0 0 0 0 0 0 0 0
Total # of neighbors = 71389
Ave neighs/atom = 8.76907
Neighbor list builds = 100
Dangerous builds = 0
Total wall time: 0:00:21
rm -rf test
make[1]: Leaving directory '/<<BUILDDIR>>/lammps-20200303+dfsg1'
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch --with python3 --sourcedirectory=cmake --builddirectory=/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build
dh_testroot -a -O--sourcedirectory=cmake -O--builddirectory=/<<BUILDDIR>>/lammps-20200303\+dfsg1/debian/build
dh_prep -a -O--sourcedirectory=cmake -O--builddirectory=/<<BUILDDIR>>/lammps-20200303\+dfsg1/debian/build
dh_auto_install -a -O--sourcedirectory=cmake -O--builddirectory=/<<BUILDDIR>>/lammps-20200303\+dfsg1/debian/build
cd debian/build && make -j4 install DESTDIR=/<<BUILDDIR>>/lammps-20200303\+dfsg1/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true"
make[1]: Entering directory '/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build'
/usr/bin/cmake -S/<<BUILDDIR>>/lammps-20200303+dfsg1/cmake -B/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/CMakeFiles /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[2]: Entering directory '/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build'
make -f CMakeFiles/poems.dir/build.make CMakeFiles/poems.dir/depend
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make[3]: Entering directory '/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build'
cd /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/lammps-20200303+dfsg1/cmake /<<BUILDDIR>>/lammps-20200303+dfsg1/cmake /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/CMakeFiles/h5md.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build'
cd /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/lammps-20200303+dfsg1/cmake /<<BUILDDIR>>/lammps-20200303+dfsg1/cmake /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/CMakeFiles/awpmd.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build'
cd /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/lammps-20200303+dfsg1/cmake /<<BUILDDIR>>/lammps-20200303+dfsg1/cmake /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/CMakeFiles/poems.dir/DependInfo.cmake --color=
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make -f CMakeFiles/awpmd.dir/build.make CMakeFiles/awpmd.dir/build
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make[3]: Leaving directory '/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build'
[ 1%] Built target awpmd
[ 1%] Built target h5md
make -f CMakeFiles/gpu.dir/build.make CMakeFiles/gpu.dir/depend
make -f CMakeFiles/gitversion.dir/build.make CMakeFiles/gitversion.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build'
cd /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/lammps-20200303+dfsg1/cmake /<<BUILDDIR>>/lammps-20200303+dfsg1/cmake /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/CMakeFiles/gitversion.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build'
cd /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/lammps-20200303+dfsg1/cmake /<<BUILDDIR>>/lammps-20200303+dfsg1/cmake /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/CMakeFiles/atc.dir/DependInfo.cmake --color=
[ 4%] Built target poems
make -f CMakeFiles/ocl_get_devices.dir/build.make CMakeFiles/ocl_get_devices.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build'
cd /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/lammps-20200303+dfsg1/cmake /<<BUILDDIR>>/lammps-20200303+dfsg1/cmake /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/CMakeFiles/ocl_get_devices.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build'
make -f CMakeFiles/gitversion.dir/build.make CMakeFiles/gitversion.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build'
/usr/bin/cmake -DCMAKE_CURRENT_SOURCE_DIR="/<<BUILDDIR>>/lammps-20200303+dfsg1/cmake" -DGIT_EXECUTABLE="GIT_EXECUTABLE-NOTFOUND" -DGIT_FOUND="FALSE" -DLAMMPS_STYLE_HEADERS_DIR="/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/styles" -P /<<BUILDDIR>>/lammps-20200303+dfsg1/cmake/Modules/generate_lmpgitversion.cmake
make[3]: Leaving directory '/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build'
make -f CMakeFiles/ocl_get_devices.dir/build.make CMakeFiles/ocl_get_devices.dir/build
-- Generating lmpgitversion.h...
make[3]: Leaving directory '/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build'
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[ 4%] Built target ocl_get_devices
make[3]: Entering directory '/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build'
cd /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/lammps-20200303+dfsg1/cmake /<<BUILDDIR>>/lammps-20200303+dfsg1/cmake /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/CMakeFiles/gpu.dir/DependInfo.cmake --color=
[ 4%] Built target gitversion
make[3]: Leaving directory '/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build'
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[ 9%] Built target atc
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[ 17%] Built target gpu
make -f CMakeFiles/lammps.dir/build.make CMakeFiles/lammps.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build'
cd /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/lammps-20200303+dfsg1/cmake /<<BUILDDIR>>/lammps-20200303+dfsg1/cmake /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/CMakeFiles/lammps.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build'
make -f CMakeFiles/lammps.dir/build.make CMakeFiles/lammps.dir/build
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[100%] Built target lammps
make -f CMakeFiles/lmp.dir/build.make CMakeFiles/lmp.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build'
cd /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/lammps-20200303+dfsg1/cmake /<<BUILDDIR>>/lammps-20200303+dfsg1/cmake /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/CMakeFiles/lmp.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build'
make -f CMakeFiles/lmp.dir/build.make CMakeFiles/lmp.dir/build
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make[3]: Nothing to be done for 'CMakeFiles/lmp.dir/build'.
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[100%] Built target lmp
make[2]: Leaving directory '/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build'
/usr/bin/cmake -E cmake_progress_start /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build/CMakeFiles 0
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Install the project...
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "None"
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/lib/arm-linux-gnueabihf/liblammps.so.0
-- Set runtime path of "/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/lib/arm-linux-gnueabihf/liblammps.so.0" to ""
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/lib/arm-linux-gnueabihf/liblammps.so
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/include/lammps/library.h
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/include/lammps/angle.h
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/include/lammps/atom.h
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/include/lammps/bond.h
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/include/lammps/citeme.h
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/include/lammps/comm.h
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/include/lammps/compute.h
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/include/lammps/dihedral.h
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/include/lammps/domain.h
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/include/lammps/error.h
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/include/lammps/fix.h
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/include/lammps/force.h
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/include/lammps/group.h
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/include/lammps/improper.h
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/include/lammps/input.h
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/include/lammps/kspace.h
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/include/lammps/lammps.h
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/include/lammps/lattice.h
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/include/lammps/lmppython.h
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/include/lammps/memory.h
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/include/lammps/modify.h
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/include/lammps/neighbor.h
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/include/lammps/neigh_list.h
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/include/lammps/output.h
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/include/lammps/pair.h
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/include/lammps/pointers.h
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/include/lammps/region.h
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/include/lammps/timer.h
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/include/lammps/universe.h
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/include/lammps/update.h
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/include/lammps/variable.h
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig/liblammps.pc
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/cmake/Modules/FindLAMMPS.cmake
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/bin/lmp
-- Set runtime path of "/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/bin/lmp" to ""
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/man/man1/lmp.1
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/Al_mm.eam.fs
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/VFe_mm.eam.fs
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/Mo_Zuo_JPCA2020.snap
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/SiC.tersoff.zbl
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/Mg_mm.eam.fs
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/W_2940_2017_2.snapparam
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/Cu_Zuo_JPCA2020.quadratic.snap
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/Ti.meam.spline
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/ffield.reax.AuO
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/Au_u3.eam
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/Ta6.8x.mgpt.potin
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/CuNi.eam.alloy
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/CdTe.sw
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/NiAlH_jea.eam.fs
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/WBe_Wood_PRB2019.snapcoeff
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/BNC.tersoff
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/CuTa_eam.poly
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/ci-reaxFF_ZBL.dat
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/Mo_Zuo_JPCA2020.quadratic.snapcoeff
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/Zr_mm.eam.fs
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/Mo_Zuo_JPCA2020.quadratic.snapparam
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/CdZnTe_v1.bop.table
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/CH.airebo-m
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/Cu_u6.eam
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/SiC.meam
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/V6.1.mgpt.parmin
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/GaN_sw.poly
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/W_zhou.eam.alloy
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/W_2940_2017_2.snap
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/CC.Lebedeva
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/Ni_Zuo_JPCA2020.snap
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/W_2940_2017_2.snapcoeff
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/Mo_Chen_PRM2017.snapparam
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/Ta6.8x.mgpt.parmin
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/Si_2.meam.spline
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/Ni_Zuo_JPCA2020.quadratic.snapcoeff
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/SiO.tersoff
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/Pd_u3.eam
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/SiC.gw.zbl
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/Si_Zuo_JPCA2020.snap
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/CuH.bop.table
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/SiC_1989.tersoff
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/Si_Zuo_JPCA2020.snapparam
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/CC.KC-full
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/Al_prb.agni
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/CdTeZnSeHgS0.sw
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/WL.meam
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/InP.vashishta
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/ffield.reax.rdx
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/ffield.reax.AB
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/SiO.1990.vashishta
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/SiC.vashishta
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/GaAs.bop.table
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/Ge_Zuo_JPCA2020.snap
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/BNCH-old.ILP
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/Li_Zuo_JPCA2020.snap
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/CdTeSe.bop.table
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/Mo_Chen_PRM2017.snapcoeff
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/Cu_u3.eam
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/Cu_Zuo_JPCA2020.snap
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/Si.edip
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/FeCr.cdeam
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/ffield.comb3
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/Ge.tersoff
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/Mo_Zuo_JPCA2020.snapparam
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/ffield.reax.mattsson
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/MOH.nb3b.harmonic
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/Ni_Zuo_JPCA2020.quadratic.snapparam
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/Ta06A.snapcoeff
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/CdZnTe_v2.bop.table
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/SiC.tersoff
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/Ge_Zuo_JPCA2020.quadratic.snap
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/Cu_smf7.eam
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/BN.extep
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/Ta06A.snap
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/C_10_10.mesocnt
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/W_2940_2017_2_He_JW2013.snap
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/Cu.meam
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/BNC_MBD_bulk.ILP
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/CCu_v2.bop.table
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/Si.tersoff.mod
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/C.drip
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/Ta4.mgpt.README
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/Mo5.2.mgpt.potin
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/ffield.smtbq.Al
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/He_He_JW2013.table
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/AlSiMgCuFe.meam
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/AlO.eam.alloy
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/Mo_Zuo_JPCA2020.snapcoeff
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/ffield.reax.Fe_O_C_H
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/library.meam
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/C.lcbop
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/AlCu.eam.alloy
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/Cu_Zuo_JPCA2020.quadratic.snapcoeff
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/BNC_TS_bulk.ILP
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/V6.1.mgpt.potin
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/GaN.sw
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/ffield.smtbq.Al2O3
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/SiC.gw
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/SiCGe.tersoff
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/Fe_mm.eam.fs
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/SiC.edip
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/SiC_1994.tersoff
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/README.reax
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/BNCH.ILP
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/ffield.smtbq.TiO2
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/charmm22.cmap
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/Si_Zuo_JPCA2020.quadratic.snapparam
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/README
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/Ta4.mgpt.parmin
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/Cu_Zuo_JPCA2020.snapparam
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/ffield.ci-reax.CH
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/Al_zhou.eam.alloy
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/Mo5.2.mgpt.parmin
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/CuTa.eam.alloy
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/Li_Zuo_JPCA2020.snapparam
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/ffield.reax.FC
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/WBe_Wood_PRB2019.snap
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/Al_jnp.eam
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/Si.sw
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/Ge_Zuo_JPCA2020.snapcoeff
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/Ni_smf7.eam
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/ffield.reax.V_O_C_H
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/Li_Zuo_JPCA2020.quadratic.snapparam
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/Mo5.2.mgpt.README
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/CdTe.bop.table
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/Si_Zuo_JPCA2020.snapcoeff
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/Ta6.8x.mgpt.README
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/Ge_Zuo_JPCA2020.quadratic.snapcoeff
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/ffield.eim
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/Al_jpc.agni
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/lib.comb3
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/ffield.reax.ZnOH
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/NiAlH_jea.eam.alloy
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/SiC_Erhart-Albe.tersoff
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/SiO.1994.vashishta
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/WBe_Wood_PRB2019.snapparam
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/Si_Zuo_JPCA2020.quadratic.snap
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/AlCuH.bop.table
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/Ni_u3.eam
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/V6.1.mgpt.README
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/Mo_Zuo_JPCA2020.quadratic.snap
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/ffield.reax.budzien
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/Si_1.meam.spline
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/CH.KC
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/Si.tersoff
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/CC.KC
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/Ti.meam.sw.spline
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/FeP_mm.eam.fs
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/charmm36.cmap
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/CoAl.eam.alloy
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/ffield.reax.cho
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/GaN.tersoff
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/CuZr_mm.eam.fs
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/TiO.meam.spline
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/SiC_1990.tersoff
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/ffield.reax.lg
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/CH.airebo
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/Cu_zhou.eam.alloy
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/Ta4.mgpt.potin
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/Ni.meam
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/Cu_Zuo_JPCA2020.snapcoeff
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/GaN_tersoff.poly
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/Li_Zuo_JPCA2020.quadratic.snap
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/ffield.comb
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/Li_Zuo_JPCA2020.quadratic.snapcoeff
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/Mo_Chen_PRM2017.snap
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/AlFe_mm.eam.fs
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/Ni_Zuo_JPCA2020.snapparam
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/Cu_Zuo_JPCA2020.quadratic.snapparam
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/Ag_u3.eam
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/Pt_u3.eam
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/Ni_Zuo_JPCA2020.snapcoeff
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/Li_Zuo_JPCA2020.snapcoeff
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/Ta06A.snapparam
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/Si.tersoff.modc
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/Ni.adp
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/SiO.1997.vashishta
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/Si_Zuo_JPCA2020.quadratic.snapcoeff
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/Ge_Zuo_JPCA2020.snapparam
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/Ni_Zuo_JPCA2020.quadratic.snap
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/AlO.streitz
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/AlCu.adp
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/W_He_JW2013.table
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/Cu_mishin1.eam.alloy
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/Si.b.meam.sw.spline
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/CH.rebo
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/Ge_Zuo_JPCA2020.quadratic.snapparam
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/CH_taper.KC
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/share/lammps/potentials/AlCu.bop.table
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/etc/profile.d/lammps.sh
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/etc/profile.d/lammps.csh
-- Installing: /<<BUILDDIR>>/lammps-20200303+dfsg1/debian/tmp/usr/lib/python3/dist-packages/lammps.py
make[1]: Leaving directory '/<<BUILDDIR>>/lammps-20200303+dfsg1/debian/build'
debian/rules override_dh_install
make[1]: Entering directory '/<<BUILDDIR>>/lammps-20200303+dfsg1'
dh_install -X.gitignore
make[1]: Leaving directory '/<<BUILDDIR>>/lammps-20200303+dfsg1'
dh_installdocs -a -O--sourcedirectory=cmake -O--builddirectory=/<<BUILDDIR>>/lammps-20200303\+dfsg1/debian/build
dh_installchangelogs -a -O--sourcedirectory=cmake -O--builddirectory=/<<BUILDDIR>>/lammps-20200303\+dfsg1/debian/build
debian/rules override_dh_installexamples
make[1]: Entering directory '/<<BUILDDIR>>/lammps-20200303+dfsg1'
dh_installexamples -X.gitignore
make[1]: Leaving directory '/<<BUILDDIR>>/lammps-20200303+dfsg1'
dh_installman -a -O--sourcedirectory=cmake -O--builddirectory=/<<BUILDDIR>>/lammps-20200303\+dfsg1/debian/build
dh_python3 -a -O--sourcedirectory=cmake -O--builddirectory=/<<BUILDDIR>>/lammps-20200303\+dfsg1/debian/build
dh_installinit -a -O--sourcedirectory=cmake -O--builddirectory=/<<BUILDDIR>>/lammps-20200303\+dfsg1/debian/build
dh_installsystemduser -a -O--sourcedirectory=cmake -O--builddirectory=/<<BUILDDIR>>/lammps-20200303\+dfsg1/debian/build
dh_lintian -a -O--sourcedirectory=cmake -O--builddirectory=/<<BUILDDIR>>/lammps-20200303\+dfsg1/debian/build
dh_perl -a -O--sourcedirectory=cmake -O--builddirectory=/<<BUILDDIR>>/lammps-20200303\+dfsg1/debian/build
dh_link -a -O--sourcedirectory=cmake -O--builddirectory=/<<BUILDDIR>>/lammps-20200303\+dfsg1/debian/build
dh_strip_nondeterminism -a -O--sourcedirectory=cmake -O--builddirectory=/<<BUILDDIR>>/lammps-20200303\+dfsg1/debian/build
dh_compress -a -O--sourcedirectory=cmake -O--builddirectory=/<<BUILDDIR>>/lammps-20200303\+dfsg1/debian/build
dh_fixperms -a -O--sourcedirectory=cmake -O--builddirectory=/<<BUILDDIR>>/lammps-20200303\+dfsg1/debian/build
dh_missing -a -O--sourcedirectory=cmake -O--builddirectory=/<<BUILDDIR>>/lammps-20200303\+dfsg1/debian/build
debian/rules override_dh_dwz
make[1]: Entering directory '/<<BUILDDIR>>/lammps-20200303+dfsg1'
dh_dwz -Xliblammps.so.0
make[1]: Leaving directory '/<<BUILDDIR>>/lammps-20200303+dfsg1'
dh_strip -a -O--sourcedirectory=cmake -O--builddirectory=/<<BUILDDIR>>/lammps-20200303\+dfsg1/debian/build
dh_makeshlibs -a -O--sourcedirectory=cmake -O--builddirectory=/<<BUILDDIR>>/lammps-20200303\+dfsg1/debian/build
dh_shlibdeps -a -O--sourcedirectory=cmake -O--builddirectory=/<<BUILDDIR>>/lammps-20200303\+dfsg1/debian/build
dpkg-shlibdeps: warning: debian/lammps/usr/bin/lmp contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/liblammps0/usr/lib/arm-linux-gnueabihf/liblammps.so.0 found in none of the libraries
dh_installdeb -a -O--sourcedirectory=cmake -O--builddirectory=/<<BUILDDIR>>/lammps-20200303\+dfsg1/debian/build
dh_gencontrol -a -O--sourcedirectory=cmake -O--builddirectory=/<<BUILDDIR>>/lammps-20200303\+dfsg1/debian/build
dpkg-gencontrol: warning: Depends field of package liblammps-dev: substitution variable ${shlibs:Depends} used, but is not defined
dpkg-gencontrol: warning: Depends field of package python3-lammps: substitution variable ${shlibs:Depends} used, but is not defined
dh_md5sums -a -O--sourcedirectory=cmake -O--builddirectory=/<<BUILDDIR>>/lammps-20200303\+dfsg1/debian/build
dh_builddeb -a -O--sourcedirectory=cmake -O--builddirectory=/<<BUILDDIR>>/lammps-20200303\+dfsg1/debian/build
dpkg-deb: building package 'liblammps-dev' in '../liblammps-dev_20200303+dfsg1-3_armhf.deb'.
dpkg-deb: building package 'lammps' in '../lammps_20200303+dfsg1-3_armhf.deb'.
dpkg-deb: building package 'liblammps0-dbgsym' in '../liblammps0-dbgsym_20200303+dfsg1-3_armhf.deb'.
dpkg-deb: building package 'lammps-dbgsym' in '../lammps-dbgsym_20200303+dfsg1-3_armhf.deb'.
dpkg-deb: building package 'liblammps0' in '../liblammps0_20200303+dfsg1-3_armhf.deb'.
dpkg-deb: building package 'python3-lammps' in '../python3-lammps_20200303+dfsg1-3_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> >../lammps_20200303+dfsg1-3_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2020-05-19T07:03:07Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
lammps_20200303+dfsg1-3_armhf.changes:
--------------------------------------
Format: 1.8
Date: Sat, 16 May 2020 20:59:56 +0200
Source: lammps
Binary: lammps lammps-dbgsym liblammps-dev liblammps0 liblammps0-dbgsym python3-lammps
Architecture: armhf
Version: 20200303+dfsg1-3
Distribution: bullseye-staging
Urgency: medium
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Anton Gladky <gladk@debian.org>
Description:
lammps - Molecular Dynamics Simulator
liblammps-dev - Molecular Dynamics Simulator (dev files)
liblammps0 - Molecular Dynamics Simulator (shared library)
python3-lammps - Molecular Dynamics Simulator
Closes: 960745
Changes:
lammps (20200303+dfsg1-3) unstable; urgency=medium
.
* [4476c93] Drop downloading mathjax from internet. (Closes: #960745)
Checksums-Sha1:
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Checksums-Sha256:
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Files:
08e7760db2bcbdbe9cebc9b7a2d73bea 31188 debug optional lammps-dbgsym_20200303+dfsg1-3_armhf.deb
336caee2ccb9f490c8e5dca923f886f1 23347 science optional lammps_20200303+dfsg1-3_armhf.buildinfo
8381f9ea84a80147f29cfb1d1dbcf451 17756 science optional lammps_20200303+dfsg1-3_armhf.deb
1467ce76179e88e075371bf410feff11 53640 science optional liblammps-dev_20200303+dfsg1-3_armhf.deb
aae5288888a5c8dbad552612ef8419c0 80912396 debug optional liblammps0-dbgsym_20200303+dfsg1-3_armhf.deb
e0c913ebda8d6785cb49bff4d69148d3 5264324 science optional liblammps0_20200303+dfsg1-3_armhf.deb
2e911b91868b7f4d8ea093e925805af8 429032 python optional python3-lammps_20200303+dfsg1-3_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
lammps-dbgsym_20200303+dfsg1-3_armhf.deb
----------------------------------------
new Debian package, version 2.0.
size 31188 bytes: control archive=536 bytes.
390 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: lammps-dbgsym
Source: lammps
Version: 20200303+dfsg1-3
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Science Maintainers <debian-science-maintainers@lists.alioth.debian.org>
Installed-Size: 44
Depends: lammps (= 20200303+dfsg1-3)
Section: debug
Priority: optional
Description: debug symbols for lammps
Build-Ids: f657f34aa45001b6c1673ee26a61b10430188cc6
drwxr-xr-x root/root 0 2020-05-16 18:59 ./
drwxr-xr-x root/root 0 2020-05-16 18:59 ./usr/
drwxr-xr-x root/root 0 2020-05-16 18:59 ./usr/lib/
drwxr-xr-x root/root 0 2020-05-16 18:59 ./usr/lib/debug/
drwxr-xr-x root/root 0 2020-05-16 18:59 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2020-05-16 18:59 ./usr/lib/debug/.build-id/f6/
-rw-r--r-- root/root 33888 2020-05-16 18:59 ./usr/lib/debug/.build-id/f6/57f34aa45001b6c1673ee26a61b10430188cc6.debug
drwxr-xr-x root/root 0 2020-05-16 18:59 ./usr/share/
drwxr-xr-x root/root 0 2020-05-16 18:59 ./usr/share/doc/
lrwxrwxrwx root/root 0 2020-05-16 18:59 ./usr/share/doc/lammps-dbgsym -> lammps
lammps_20200303+dfsg1-3_armhf.deb
---------------------------------
new Debian package, version 2.0.
size 17756 bytes: control archive=1180 bytes.
51 bytes, 2 lines conffiles
1139 bytes, 23 lines control
387 bytes, 6 lines md5sums
Package: lammps
Version: 20200303+dfsg1-3
Architecture: armhf
Maintainer: Debian Science Maintainers <debian-science-maintainers@lists.alioth.debian.org>
Installed-Size: 51
Depends: lammps-data, libc6 (>= 2.4), libfftw3-double3 (>= 3.3.5), liblammps0 (>= 20200303+dfsg1), libopenmpi3 (>= 4.0.3), libstdc++6 (>= 5), mpi-default-bin
Recommends: lammps-doc
Suggests: python3, openkim-models
Section: science
Priority: optional
Homepage: https://lammps.sandia.gov/
Description: Molecular Dynamics Simulator
LAMMPS is a classical molecular dynamics code, and an acronym for Large-scale
Atomic/Molecular Massively Parallel Simulator.
.
LAMMPS has potentials for soft materials (biomolecules, polymers) and
solid-state materials (metals, semiconductors) and coarse-grained or
mesoscopic systems. It can be used to model atoms or, more generically, as a
parallel particle simulator at the atomic, meso, or continuum scale.
.
LAMMPS runs on single processors or in parallel using message-passing
techniques and a spatial-decomposition of the simulation domain. The code is
designed to be easy to modify or extend with new functionality.
drwxr-xr-x root/root 0 2020-05-16 18:59 ./
drwxr-xr-x root/root 0 2020-05-16 18:59 ./etc/
drwxr-xr-x root/root 0 2020-05-16 18:59 ./etc/profile.d/
-rw-r--r-- root/root 266 2020-05-16 18:59 ./etc/profile.d/lammps.csh
-rw-r--r-- root/root 267 2020-05-16 18:59 ./etc/profile.d/lammps.sh
drwxr-xr-x root/root 0 2020-05-16 18:59 ./usr/
drwxr-xr-x root/root 0 2020-05-16 18:59 ./usr/bin/
-rwxr-xr-x root/root 5676 2020-05-16 18:59 ./usr/bin/lmp
drwxr-xr-x root/root 0 2020-05-16 18:59 ./usr/share/
drwxr-xr-x root/root 0 2020-05-16 18:59 ./usr/share/doc/
drwxr-xr-x root/root 0 2020-05-16 18:59 ./usr/share/doc/lammps/
-rw-r--r-- root/root 214 2020-04-13 11:51 ./usr/share/doc/lammps/NEWS.Debian.gz
-rw-r--r-- root/root 4160 2020-05-16 18:59 ./usr/share/doc/lammps/changelog.Debian.gz
-rw-r--r-- root/root 16661 2020-05-16 18:59 ./usr/share/doc/lammps/copyright
drwxr-xr-x root/root 0 2020-05-16 18:59 ./usr/share/lintian/
drwxr-xr-x root/root 0 2020-05-16 18:59 ./usr/share/lintian/overrides/
-rw-r--r-- root/root 56 2020-04-13 11:51 ./usr/share/lintian/overrides/lammps
drwxr-xr-x root/root 0 2020-05-16 18:59 ./usr/share/man/
drwxr-xr-x root/root 0 2020-05-16 18:59 ./usr/share/man/man3/
-rw-r--r-- root/root 4244 2020-05-16 18:59 ./usr/share/man/man3/lmp.3.gz
liblammps-dev_20200303+dfsg1-3_armhf.deb
----------------------------------------
new Debian package, version 2.0.
size 53640 bytes: control archive=1944 bytes.
1152 bytes, 26 lines control
2318 bytes, 36 lines md5sums
Package: liblammps-dev
Source: lammps
Version: 20200303+dfsg1-3
Architecture: armhf
Maintainer: Debian Science Maintainers <debian-science-maintainers@lists.alioth.debian.org>
Installed-Size: 277
Depends: liblammps0 (= 20200303+dfsg1-3), mpi-default-dev
Recommends: lammps-doc
Section: science
Priority: optional
Homepage: https://lammps.sandia.gov/
Description: Molecular Dynamics Simulator (dev files)
LAMMPS is a classical molecular dynamics code, and an acronym for Large-scale
Atomic/Molecular Massively Parallel Simulator.
.
LAMMPS has potentials for soft materials (biomolecules, polymers) and
solid-state materials (metals, semiconductors) and coarse-grained or
mesoscopic systems. It can be used to model atoms or, more generically, as a
parallel particle simulator at the atomic, meso, or continuum scale.
.
LAMMPS runs on single processors or in parallel using message-passing
techniques and a spatial-decomposition of the simulation domain. The code is
designed to be easy to modify or extend with new functionality.
.
This package contains development files and headers to build applications
using the LAMMPS shared library.
drwxr-xr-x root/root 0 2020-05-16 18:59 ./
drwxr-xr-x root/root 0 2020-05-16 18:59 ./usr/
drwxr-xr-x root/root 0 2020-05-16 18:59 ./usr/include/
drwxr-xr-x root/root 0 2020-05-16 18:59 ./usr/include/lammps/
-rw-r--r-- root/root 2842 2020-03-03 15:27 ./usr/include/lammps/angle.h
-rw-r--r-- root/root 15271 2020-03-03 15:27 ./usr/include/lammps/atom.h
-rw-r--r-- root/root 3146 2020-03-03 15:27 ./usr/include/lammps/bond.h
-rw-r--r-- root/root 1382 2020-03-03 15:27 ./usr/include/lammps/citeme.h
-rw-r--r-- root/root 10224 2020-03-03 15:27 ./usr/include/lammps/comm.h
-rw-r--r-- root/root 7631 2020-03-03 15:27 ./usr/include/lammps/compute.h
-rw-r--r-- root/root 2848 2020-03-03 15:27 ./usr/include/lammps/dihedral.h
-rw-r--r-- root/root 11251 2020-03-03 15:27 ./usr/include/lammps/domain.h
-rw-r--r-- root/root 1574 2020-03-03 15:27 ./usr/include/lammps/error.h
-rw-r--r-- root/root 12344 2020-03-03 15:27 ./usr/include/lammps/fix.h
-rw-r--r-- root/root 9343 2020-03-03 15:27 ./usr/include/lammps/force.h
-rw-r--r-- root/root 5058 2020-03-03 15:27 ./usr/include/lammps/group.h
-rw-r--r-- root/root 2835 2020-03-03 15:27 ./usr/include/lammps/improper.h
-rw-r--r-- root/root 11213 2020-03-03 15:27 ./usr/include/lammps/input.h
-rw-r--r-- root/root 9875 2020-03-03 15:27 ./usr/include/lammps/kspace.h
-rw-r--r-- root/root 6877 2020-03-03 15:27 ./usr/include/lammps/lammps.h
-rw-r--r-- root/root 3540 2020-03-03 15:27 ./usr/include/lammps/lattice.h
-rw-r--r-- root/root 5502 2020-03-03 15:27 ./usr/include/lammps/library.h
-rw-r--r-- root/root 3491 2020-03-03 15:27 ./usr/include/lammps/lmppython.h
-rw-r--r-- root/root 21968 2020-03-03 15:27 ./usr/include/lammps/memory.h
-rw-r--r-- root/root 8109 2020-03-03 15:27 ./usr/include/lammps/modify.h
-rw-r--r-- root/root 5014 2020-03-03 15:27 ./usr/include/lammps/neigh_list.h
-rw-r--r-- root/root 14858 2020-03-03 15:27 ./usr/include/lammps/neighbor.h
-rw-r--r-- root/root 6487 2020-03-03 15:27 ./usr/include/lammps/output.h
-rw-r--r-- root/root 13915 2020-03-03 15:27 ./usr/include/lammps/pair.h
-rw-r--r-- root/root 2713 2020-03-03 15:27 ./usr/include/lammps/pointers.h
-rw-r--r-- root/root 5272 2020-03-03 15:27 ./usr/include/lammps/region.h
-rw-r--r-- root/root 3531 2020-03-03 15:27 ./usr/include/lammps/timer.h
-rw-r--r-- root/root 2319 2020-03-03 15:27 ./usr/include/lammps/universe.h
-rw-r--r-- root/root 3728 2020-03-03 15:27 ./usr/include/lammps/update.h
-rw-r--r-- root/root 13616 2020-03-03 15:27 ./usr/include/lammps/variable.h
drwxr-xr-x root/root 0 2020-05-16 18:59 ./usr/lib/
drwxr-xr-x root/root 0 2020-05-16 18:59 ./usr/lib/arm-linux-gnueabihf/
lrwxrwxrwx root/root 0 2020-05-16 18:59 ./usr/lib/arm-linux-gnueabihf/liblammps.so -> liblammps.so.0
drwxr-xr-x root/root 0 2020-05-16 18:59 ./usr/lib/arm-linux-gnueabihf/pkgconfig/
-rw-r--r-- root/root 1070 2020-05-16 18:59 ./usr/lib/arm-linux-gnueabihf/pkgconfig/liblammps.pc
drwxr-xr-x root/root 0 2020-05-16 18:59 ./usr/share/
drwxr-xr-x root/root 0 2020-05-16 18:59 ./usr/share/cmake/
drwxr-xr-x root/root 0 2020-05-16 18:59 ./usr/share/cmake/Modules/
-rw-r--r-- root/root 1978 2020-05-16 18:59 ./usr/share/cmake/Modules/FindLAMMPS.cmake
drwxr-xr-x root/root 0 2020-05-16 18:59 ./usr/share/doc/
drwxr-xr-x root/root 0 2020-05-16 18:59 ./usr/share/doc/liblammps-dev/
-rw-r--r-- root/root 214 2020-04-13 11:51 ./usr/share/doc/liblammps-dev/NEWS.Debian.gz
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-rw-r--r-- root/root 16661 2020-05-16 18:59 ./usr/share/doc/liblammps-dev/copyright
liblammps0-dbgsym_20200303+dfsg1-3_armhf.deb
--------------------------------------------
new Debian package, version 2.0.
size 80912396 bytes: control archive=560 bytes.
422 bytes, 13 lines control
106 bytes, 1 lines md5sums
Package: liblammps0-dbgsym
Source: lammps
Version: 20200303+dfsg1-3
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Science Maintainers <debian-science-maintainers@lists.alioth.debian.org>
Installed-Size: 83197
Depends: liblammps0 (= 20200303+dfsg1-3)
Section: debug
Priority: optional
Multi-Arch: same
Description: debug symbols for liblammps0
Build-Ids: 5b6bbe7e4a42ba68dbe30d8ac9090a9dd222b13f
drwxr-xr-x root/root 0 2020-05-16 18:59 ./
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lrwxrwxrwx root/root 0 2020-05-16 18:59 ./usr/share/doc/liblammps0-dbgsym -> liblammps0
liblammps0_20200303+dfsg1-3_armhf.deb
-------------------------------------
new Debian package, version 2.0.
size 5264324 bytes: control archive=1396 bytes.
1531 bytes, 25 lines control
372 bytes, 5 lines md5sums
43 bytes, 1 lines shlibs
63 bytes, 2 lines triggers
Package: liblammps0
Source: lammps
Version: 20200303+dfsg1-3
Architecture: armhf
Maintainer: Debian Science Maintainers <debian-science-maintainers@lists.alioth.debian.org>
Installed-Size: 22416
Depends: libblas3 | libblas.so.3, libc6 (>= 2.29), libcurl3-gnutls (>= 7.16.2), libfftw3-double3 (>= 3.3.5), libgcc-s1 (>= 4.0), libhdf5-openmpi-103-1 (>= 1.8.14), libjpeg62-turbo (>= 1.3.1), libkim-api2 (>= 2.1.3), liblapack3 | liblapack.so.3, libnetcdf18 (>= 4.0.1), libopenmpi3 (>= 4.0.3), libpng16-16 (>= 1.6.2-1), libpython3.8 (>= 3.8.2), libstdc++6 (>= 9), libvoro++1 (>= 0.4.6), libvtk7.1p, ocl-icd-libopencl1 | libopencl1, ocl-icd-libopencl1 (>= 1.0) | libopencl-1.2-1, zlib1g (>= 1:1.1.4)
Section: science
Priority: optional
Multi-Arch: same
Homepage: https://lammps.sandia.gov/
Description: Molecular Dynamics Simulator (shared library)
LAMMPS is a classical molecular dynamics code, and an acronym for Large-scale
Atomic/Molecular Massively Parallel Simulator.
.
LAMMPS has potentials for soft materials (biomolecules, polymers) and
solid-state materials (metals, semiconductors) and coarse-grained or
mesoscopic systems. It can be used to model atoms or, more generically, as a
parallel particle simulator at the atomic, meso, or continuum scale.
.
LAMMPS runs on single processors or in parallel using message-passing
techniques and a spatial-decomposition of the simulation domain. The code is
designed to be easy to modify or extend with new functionality.
.
This package provides the LAMMPS shared library.
drwxr-xr-x root/root 0 2020-05-16 18:59 ./
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-rw-r--r-- root/root 56 2020-04-13 11:51 ./usr/share/lintian/overrides/liblammps0
python3-lammps_20200303+dfsg1-3_armhf.deb
-----------------------------------------
new Debian package, version 2.0.
size 429032 bytes: control archive=2368 bytes.
1092 bytes, 25 lines control
3738 bytes, 43 lines md5sums
253 bytes, 12 lines * postinst #!/bin/sh
402 bytes, 12 lines * prerm #!/bin/sh
Package: python3-lammps
Source: lammps
Version: 20200303+dfsg1-3
Architecture: armhf
Maintainer: Debian Science Maintainers <debian-science-maintainers@lists.alioth.debian.org>
Installed-Size: 824
Depends: liblammps0, python3:any, mpi-default-bin
Recommends: python3-mpi4py, lammps-doc
Section: python
Priority: optional
Homepage: https://lammps.sandia.gov/
Description: Molecular Dynamics Simulator
LAMMPS is a classical molecular dynamics code, and an acronym for Large-scale
Atomic/Molecular Massively Parallel Simulator.
.
LAMMPS has potentials for soft materials (biomolecules, polymers) and
solid-state materials (metals, semiconductors) and coarse-grained or
mesoscopic systems. It can be used to model atoms or, more generically, as a
parallel particle simulator at the atomic, meso, or continuum scale.
.
LAMMPS runs on single processors or in parallel using message-passing
techniques and a spatial-decomposition of the simulation domain. The code is
designed to be easy to modify or extend with new functionality.
.
This package provides the Python module for LAMMPS.
drwxr-xr-x root/root 0 2020-05-16 18:59 ./
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+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 2013848
Build-Time: 1619
Distribution: bullseye-staging
Host Architecture: armhf
Install-Time: 2090
Job: lammps_20200303+dfsg1-3
Machine Architecture: armhf
Package: lammps
Package-Time: 3767
Source-Version: 20200303+dfsg1-3
Space: 2013848
Status: successful
Version: 20200303+dfsg1-3
--------------------------------------------------------------------------------
Finished at 2020-05-19T07:03:07Z
Build needed 01:02:47, 2013848k disk space